pycom17g13260

mitochondrion organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012364
Physical Location & Seq
Forward (+)
10934634 .. 10935311
678 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 678 bp
ATGGAGCTTGAGACTGAGGTAGCGAGGCTCCAACACGATCTGATCTCCGCCATGGCCGAAGGGGAGGACGCGAATCACGAAGTTGCGGAGCTGAAGCGTGAGTTGGGAGAGAAGGGGGAGAAAATTGATAGCTTGGAGAAGGAGCTCGATAGCCTGAAGAAGGCGAAGGCTGATAGCGAGAAGAGGGTTAGGGAATTGGAGAGGAAGATTGGGGTTTTGGAAGTGAAGGAGACTGAGGAGAAGAGCAAGAAAATTAGGGTTGAGGAGGAGATGAGAGAGAGACTTGATGAGAAAGAGAGCGAGCTTAGCTTGTTCAAGAAAAAAGTGGAGGATTTGGAGTCAGTTATTGCGAAGAACAGTGCTGAATTGGGGAAGAGAGTGAACGAGAGGGTCAATGTCGAGGCAGCGCTGAGGGAATCGGAGGATAAGTGCAGAGCCATGGAAGTGAAGATGGGACAATTACAGAAGGACCTGATGGATGCTGAGAAGGTTATTACTGGATTGAAGGAGAGGACTGTTGAGGCCATTAATGGTAGTGCGAATGAAATGAAGGAGATTCTGGAAGGTGGAGAGACGGGGTCGAAAGGATTGAGCTTGCCAGTTGTGGCAGGGTCTACTGGAGTCGTTGTTGCCGCAGCAGCTGCTGTTGTCTATGTGTTGTATGTAAGGCAGAGGTGA

Protein Analysis

226

Amino Acids

25.11

Weight (kDa)

5.11

Isoelectric Point (pI)

31.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC39 PF24161 2 - 165 1.7e-06 Coiled-coil domain-containing protein 39
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 614
AccII CGCG 1 cut(s) 71
AciI CCGC 3 cut(s) 48, 86, 633
AcoI YGGCCR 1 cut(s) 54
AcuI CTGAAG 2 cut(s) 113, 176
AfeI AGCGCT 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 2 cut(s) 316, 505
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 8 cut(s) 7, 91, 132, 145, 304, 309, 594, 641
AluI AGCT 8 cut(s) 7, 91, 132, 145, 304, 309, 594, 641
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 4 cut(s) 5, 224, 274, 566
AlwNI CAGNNNCTG 2 cut(s) 641, 644
Aor51HI AGCGCT 1 cut(s) 408
AoxI GGCC 2 cut(s) 54, 522
ApeKI GCWGC 4 cut(s) 404, 635, 638, 641
AseI ATTAAT 1 cut(s) 528
AspLEI GCGC 1 cut(s) 409
AspS9I GGNCC 1 cut(s) 469
AvaII GGWCC 1 cut(s) 469
BanII GRGCYC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 147
BbvCI CCTCAGC 1 cut(s) 410
BbvI GCAGC 4 cut(s) 416, 628, 647, 650
BccI CCATC 2 cut(s) 445, 469
BcoDI GTCTC 4 cut(s) 5, 224, 274, 566
BfoI RGCGCY 1 cut(s) 410
BisI GCNGC 5 cut(s) 405, 633, 636, 639, 642
BlpI GCTNAGC 1 cut(s) 305
BlsI GCNGC 5 cut(s) 406, 634, 637, 640, 643
Bme18I GGWCC 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 1 cut(s) 29
BmsI GCATC 1 cut(s) 469
BpmI CTGGAG 1 cut(s) 639
Bpu10I CCTNAGC 1 cut(s) 410
Bpu1102I GCTNAGC 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 51, 438
BsaXI ACNNNNNCTCC 4 cut(s) 413, 443, 612, 642
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 3 cut(s) 502, 599, 622
BseDI CCNNGG 2 cut(s) 51, 438
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMII CTCAG 4 cut(s) 6, 225, 401, 474
BseNI ACTGG 3 cut(s) 502, 599, 622
BseRI GAGGAG 3 cut(s) 251, 278, 281
BseXI GCAGC 4 cut(s) 416, 628, 647, 650
BsgI GTGCAG 1 cut(s) 451
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 2 cut(s) 56, 524
BsiHKAI GWGCWC 1 cut(s) 147
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 4 cut(s) 5, 224, 274, 566
BsmBI CGTCTC 1 cut(s) 566
BsmFI GGGAC 1 cut(s) 468
BsnI GGCC 2 cut(s) 56, 524
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 37, 42
Bsp1720I GCTNAGC 1 cut(s) 305
Bsp19I CCATGG 2 cut(s) 51, 438
BspACI CCGC 3 cut(s) 48, 86, 633
BspANI GGCC 2 cut(s) 56, 524
BspCNI CTCAG 4 cut(s) 7, 226, 402, 475
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 29
BspQI GCTCTTC 1 cut(s) 236
BsrI ACTGG 3 cut(s) 502, 599, 622
BssECI CCNNGG 2 cut(s) 51, 438
BssMI GATC 2 cut(s) 37, 42
BssT1I CCWWGG 2 cut(s) 51, 438
Bst4CI ACNGT 2 cut(s) 359, 517
Bst6I CTCTTC 3 cut(s) 176, 236, 368
BstAPI GCANNNNNTGC 1 cut(s) 641
BstC8I GCNNGC 2 cut(s) 302, 596
BstDEI CTNAG 5 cut(s) 15, 234, 305, 410, 483
BstDSI CCRYGG 2 cut(s) 51, 438
BstENI CCTNNNNNAGG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 484
BstFNI CGCG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 2 cut(s) 40, 45
BstMAI GTCTC 4 cut(s) 5, 224, 274, 566
BstMBI GATC 2 cut(s) 37, 42
BstMWI GCNNNNNNNGC 3 cut(s) 306, 638, 641
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 4 cut(s) 416, 628, 647, 650
BsuRI GGCC 2 cut(s) 56, 524
BtgI CCRYGG 2 cut(s) 51, 438
BtsCI GGATG 1 cut(s) 484
BtsIMutI CAGTG 1 cut(s) 364
Cac8I GCNNGC 2 cut(s) 302, 596
CaiI CAGNNNCTG 2 cut(s) 641, 644
CfoI GCGC 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 469
CseI GACGC 1 cut(s) 77
CviAII CATG 2 cut(s) 52, 439
DdeI CTNAG 5 cut(s) 15, 234, 305, 410, 483
DpnI GATC 2 cut(s) 39, 44
DpnII GATC 2 cut(s) 37, 42
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 3 cut(s) 176, 236, 368
EarI CTCTTC 3 cut(s) 176, 236, 368
EciI GGCGGA 1 cut(s) 37
Ecl136II GAGCTC 1 cut(s) 145
Eco130I CCWWGG 2 cut(s) 51, 438
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 469
Eco47III AGCGCT 1 cut(s) 408
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 2 cut(s) 113, 176
EcoICRI GAGCTC 1 cut(s) 145
EcoNI CCTNNNNNAGG 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 469
EcoT14I CCWWGG 2 cut(s) 51, 438
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 2 cut(s) 51, 438
Esp3I CGTCTC 1 cut(s) 566
FaeI CATG 2 cut(s) 55, 442
FaiI YATR 4 cut(s) 53, 440, 654, 663
FaqI GGGAC 1 cut(s) 468
FatI CATG 2 cut(s) 51, 438
FblI GTMKAC 1 cut(s) 614
Fnu4HI GCNGC 5 cut(s) 405, 633, 636, 639, 642
FokI GGATG 1 cut(s) 491
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 5 cut(s) 405, 633, 636, 639, 642
GlaI GCGC 1 cut(s) 408
GluI GCNGC 5 cut(s) 405, 633, 636, 639, 642
GsuI CTGGAG 1 cut(s) 639
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 2 cut(s) 56, 524
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 409
Hin1II CATG 2 cut(s) 55, 442
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HinfI GANTC 5 cut(s) 73, 338, 416, 556, 621
Hpy166II GTNNAC 2 cut(s) 382, 615
Hpy188I TCNGA 2 cut(s) 42, 421
Hpy188III TCNNGA 3 cut(s) 77, 316, 560
Hpy8I GTNNAC 2 cut(s) 382, 615
HpyCH4III ACNGT 2 cut(s) 359, 517
HpyCH4V TGCA 1 cut(s) 432
HpyF10VI GCNNNNNNNGC 3 cut(s) 306, 638, 641
HpyF3I CTNAG 5 cut(s) 15, 234, 305, 410, 483
Hsp92II CATG 2 cut(s) 55, 442
HspAI GCGC 1 cut(s) 407
Kzo9I GATC 2 cut(s) 37, 42
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 4 cut(s) 4, 33, 88, 142
LpnPI CCDG 7 cut(s) 167, 483, 485, 545, 594, 603, 612
Lsp1109I GCAGC 4 cut(s) 416, 628, 647, 650
LweI GCATC 1 cut(s) 469
MalI GATC 2 cut(s) 39, 44
MboI GATC 2 cut(s) 37, 42
MboII GAAGA 7 cut(s) 169, 193, 217, 253, 364, 385, 460
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 5 cut(s) 123, 194, 252, 365, 458
MlyI GAGTC 2 cut(s) 347, 630
MmeI TCCRAC 1 cut(s) 55
MseI TTAA 1 cut(s) 528
MslI CAYNNNNRTG 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 641
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 3 cut(s) 306, 638, 641
NcoI CCATGG 2 cut(s) 51, 438
NdeII GATC 2 cut(s) 37, 42
NlaIII CATG 2 cut(s) 55, 442
NlaIV GGNNCC 1 cut(s) 29
PciSI GCTCTTC 1 cut(s) 236
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 3 cut(s) 73, 416, 556
PflFI GACNNNGTC 1 cut(s) 577
PkrI GCNGC 5 cut(s) 406, 634, 637, 640, 643
PleI GAGTC 2 cut(s) 346, 629
PpsI GAGTC 2 cut(s) 346, 629
PpuMI RGGWCCY 1 cut(s) 469
PshBI ATTAAT 1 cut(s) 528
Psp124BI GAGCTC 1 cut(s) 147
Psp5II RGGWCCY 1 cut(s) 469
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 1 cut(s) 469
PspPPI RGGWCCY 1 cut(s) 469
PstNI CAGNNNCTG 2 cut(s) 641, 644
PsyI GACNNNGTC 1 cut(s) 577
PvuII CAGCTG 1 cut(s) 641
RseI CAYNNNNRTG 1 cut(s) 443
SacI GAGCTC 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 5 cut(s) 405, 633, 636, 639, 642
Sau3AI GATC 2 cut(s) 37, 42
Sau96I GGNCC 1 cut(s) 469
SchI GAGTC 2 cut(s) 347, 630
SduI GDGCHC 1 cut(s) 147
SfaNI GCATC 1 cut(s) 469
SinI GGWCC 1 cut(s) 469
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 5 cut(s) 123, 194, 252, 365, 458
SsiI CCGC 3 cut(s) 48, 86, 633
SstI GAGCTC 1 cut(s) 147
StyI CCWWGG 2 cut(s) 51, 438
TaaI ACNGT 2 cut(s) 359, 517
TaqI TCGA 3 cut(s) 147, 399, 581
TasI AATT 5 cut(s) 123, 194, 252, 365, 458
TauI GCSGC 1 cut(s) 635
TfiI GAWTC 3 cut(s) 73, 416, 556
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 1 cut(s) 364
TseI GCWGC 4 cut(s) 404, 635, 638, 641
TspDTI ATGAA 2 cut(s) 558, 563
TspRI CASTG 1 cut(s) 364
Tth111I GACNNNGTC 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 469
VspI ATTAAT 1 cut(s) 528
XagI CCTNNNNNAGG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.