Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005960

Physical Location & Seq

Genomic Coordinates Reverse (-)

11066826 .. 11074557

Gene Structure 7732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAGTTGCCAAATCAAGCACCTGAGAGCTCCTCCCAGAAAAAATTGGGAAGAGGCAAAATTGAGATTAAGCGGATCGAAAACACTACAAATCGACAAGTTACCTTCTGCAAACGCCGCAACGGATTGCTTAAGAAAGCCTATGAATTGTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCGTGTTCTCCAACCGTGGCCGCCTCTATGAGTATGCTAACAACAGTGTTAGAGCAACAATAGACAGGTACAAAAAAGCATGCACTGATCCTACGAACGGTGGATCTGTTTCAGAAGCCAACACTCAGTTTTATCAGCAGGAAGCATCCAAACTGCGAAGACAGATCCGAGAAATTCAGAATTCAAACAGGCATATACTGGGTGAAGCTCTTAGCACCTTGAACACCAAGGAACTGAAGAACCTAGAAGGAAGATTGGAGAAAGGAATCAGCAGAATAAGATCCAAGAAGAATGAAATGCTGTTTTCTGAAATCGAATTCATGCAAAAAAGGGAGACCGAGCTGCAACACCACAACAATTTTCTGAGAGCAAAGATAGCTGAAAATGAGAGAGAACAGCAGCAGCAAACACATATGATGCCGGGAACTTCCTACGATCAGTCGATGCCTTCGCATTCGTATGACAGGAACTTCCTCCCAGCGGTGATCTTGGAGTCCAACAATAACCATTACCCTCACCAAGTCCAGACAGCTCTCCAACTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010097 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

243

Amino Acids

28.03

Weight (kDa)

9.47

Isoelectric Point (pI)

60.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	25 - 72	1.5e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	99 - 186	8.8e-27	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42830 AT2G42830 AT3G58780 AT3G58780 AT3G58780 AT3G58780 AT3G58780
fragaria_vesca	FvH4_6g37880 FvH4_6g37880 FvH4_6g37880
malus_domestica	MD09G1155200.v1.1 MD17G1141300.v1.1
prunus_persica	Prupe.3G170600_v2.0.a1
pyrus_communis	pycom09g07400 pycom17g13470
rosa_chinensis	RchiOBHm_Chr2g0151031
rosa_laevigata	RLG00000020525
rosa_multiflora	Rmu_sc0000185.1_g000040
rosa_roxburghii	Rroxscaffold_2G00096750
rosa_rugosa	Rorug02G0423600 Rorug02G0423600 Rorug02G0423700 Rorug02G0423800 Rorug02G0423900 Rorug02G0424000
rosa_samantha	Rh2CG470800
rosa_wichuraiana	Rw2G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	73, 118, 202, 662
AclWI	GGATC	5 cut(s)	83, 263, 292, 340, 456
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	3 cut(s)	354, 361, 497
AcuI	CTGAAG	2 cut(s)	189, 437
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	278, 661
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	366, 403
AluBI	AGCT	5 cut(s)	30, 389, 523, 560, 713
AluI	AGCT	5 cut(s)	30, 389, 523, 560, 713
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	5 cut(s)	83, 263, 292, 340, 456
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	3 cut(s)	523, 580, 583
ApoI	RAATTY	3 cut(s)	354, 361, 497
AsuC2I	CCSGG	1 cut(s)	603
AsuHPI	GGTGA	3 cut(s)	395, 676, 689
BanII	GRGCYC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	3 cut(s)	510, 592, 595
BcnI	CCSGG	1 cut(s)	603
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	1 cut(s)	425
BfrI	CTTAAG	1 cut(s)	131
BisI	GCNGC	5 cut(s)	118, 202, 524, 581, 584
BlsI	GCNGC	5 cut(s)	119, 203, 525, 582, 585
Bme1390I	CCNGG	1 cut(s)	603
BmrFI	CCNGG	1 cut(s)	603
BmrI	ACTGGG	1 cut(s)	389
BmsI	GCATC	4 cut(s)	154, 335, 588, 615
BmuI	ACTGGG	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	346
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpuMI	CCSGG	1 cut(s)	603
BsaI	GGTCTC	1 cut(s)	509
BsaJI	CCNNGG	2 cut(s)	196, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 661
Bse1I	ACTGG	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	196, 408
BseGI	GGATG	1 cut(s)	326
BseLI	CCNNNNNNNGG	2 cut(s)	278, 661
BseMII	CTCAG	3 cut(s)	15, 320, 536
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	3 cut(s)	510, 592, 595
BseYI	CCCAGC	1 cut(s)	658
BshFI	GGCC	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	602
BslI	CCNNNNNNNGG	2 cut(s)	278, 661
BsmAI	GTCTC	1 cut(s)	509
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	509
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	7 cut(s)	75, 268, 284, 345, 461, 616, 666
BspACI	CCGC	4 cut(s)	73, 118, 202, 662
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	3 cut(s)	16, 319, 537
BspPI	GGATC	5 cut(s)	83, 263, 292, 340, 456
BspTI	CTTAAG	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	2 cut(s)	196, 408
BssMI	GATC	7 cut(s)	75, 268, 284, 345, 461, 616, 666
BssT1I	CCWWGG	1 cut(s)	408
Bst4CI	ACNGT	3 cut(s)	197, 227, 281
Bst6I	CTCTTC	1 cut(s)	46
BstAFI	CTTAAG	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	4 cut(s)	24, 306, 392, 545
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	326
BstKTI	GATC	7 cut(s)	78, 271, 287, 348, 464, 619, 669
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	7 cut(s)	75, 268, 284, 345, 461, 616, 666
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 173, 557
BstNSI	RCATGY	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	601
BstV1I	GCAGC	3 cut(s)	510, 592, 595
BstV2I	GAAGAC	1 cut(s)	346
BstX2I	RGATCY	3 cut(s)	284, 345, 461
BstYI	RGATCY	3 cut(s)	284, 345, 461
BsuRI	GGCC	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	326
BtsIMutI	CAGTG	2 cut(s)	232, 264
Cac8I	GCNNGC	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	2 cut(s)	261, 502
CviJI	RGCY	8 cut(s)	30, 140, 201, 299, 389, 523, 560, 713
CviKI_1	RGCY	8 cut(s)	30, 140, 201, 299, 389, 523, 560, 713
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	4 cut(s)	24, 306, 392, 545
DpnI	GATC	7 cut(s)	77, 270, 286, 347, 463, 618, 668
DpnII	GATC	7 cut(s)	75, 268, 284, 345, 461, 616, 666
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	509
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	189, 437
EcoICRI	GAGCTC	1 cut(s)	30
EcoRI	GAATTC	2 cut(s)	361, 497
EcoT14I	CCWWGG	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	2 cut(s)	264, 505
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FatI	CATG	2 cut(s)	260, 501
FauNDI	CATATG	1 cut(s)	594
Fnu4HI	GCNGC	5 cut(s)	118, 202, 524, 581, 584
FokI	GGATG	1 cut(s)	313
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	5 cut(s)	118, 202, 524, 581, 584
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	5 cut(s)	118, 202, 524, 581, 584
GsaI	CCCAGC	1 cut(s)	662
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	602
Hin1II	CATG	2 cut(s)	264, 505
HinfI	GANTC	2 cut(s)	447, 674
HpaII	CCGG	1 cut(s)	602
HphI	GGTGA	3 cut(s)	395, 676, 689
Hpy188I	TCNGA	5 cut(s)	295, 350, 360, 490, 546
Hpy188III	TCNNGA	1 cut(s)	706
HpyAV	CCTTC	3 cut(s)	115, 422, 639
HpyCH4III	ACNGT	3 cut(s)	197, 227, 281
HpyCH4V	TGCA	4 cut(s)	111, 264, 505, 526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 173, 557
HpyF3I	CTNAG	4 cut(s)	24, 306, 392, 545
Hsp92II	CATG	2 cut(s)	264, 505
Kzo9I	GATC	7 cut(s)	75, 268, 284, 345, 461, 616, 666
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	3 cut(s)	510, 592, 595
LweI	GCATC	4 cut(s)	154, 335, 588, 615
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	7 cut(s)	77, 270, 286, 347, 463, 618, 668
MboI	GATC	7 cut(s)	75, 268, 284, 345, 461, 616, 666
MboII	GAAGA	5 cut(s)	63, 351, 430, 444, 481
MflI	RGATCY	3 cut(s)	284, 345, 461
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	7 cut(s)	44, 60, 146, 354, 361, 497, 538
MlyI	GAGTC	1 cut(s)	683
MmeI	TCCRAC	2 cut(s)	216, 702
MnlI	CCTC	5 cut(s)	43, 47, 215, 665, 705
MseI	TTAA	2 cut(s)	69, 132
MslI	CAYNNNNRTG	1 cut(s)	639
MspA1I	CMGCKG	1 cut(s)	662
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	1 cut(s)	602
MspR9I	CCNGG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	634
MwoI	GCNNNNNNNGC	3 cut(s)	117, 173, 557
NciI	CCSGG	1 cut(s)	603
NdeI	CATATG	1 cut(s)	594
NdeII	GATC	7 cut(s)	75, 268, 284, 345, 461, 616, 666
NlaIII	CATG	2 cut(s)	264, 505
NspI	RCATGY	1 cut(s)	264
PaeI	GCATGC	1 cut(s)	264
PctI	GAATGC	1 cut(s)	634
PfeI	GAWTC	1 cut(s)	447
PkrI	GCNGC	5 cut(s)	119, 203, 525, 582, 585
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
Psp124BI	GAGCTC	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	658
PsuI	RGATCY	3 cut(s)	284, 345, 461
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	639
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	69, 132
SatI	GCNGC	5 cut(s)	118, 202, 524, 581, 584
Sau3AI	GATC	7 cut(s)	75, 268, 284, 345, 461, 616, 666
SchI	GAGTC	1 cut(s)	683
ScrFI	CCNGG	1 cut(s)	603
SduI	GDGCHC	1 cut(s)	32
SfaNI	GCATC	4 cut(s)	154, 335, 588, 615
SmiMI	CAYNNNNRTG	1 cut(s)	639
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SphI	GCATGC	1 cut(s)	264
Sse9I	AATT	7 cut(s)	44, 60, 146, 354, 361, 497, 538
SsiI	CCGC	4 cut(s)	73, 118, 202, 662
SspMI	CTAG	1 cut(s)	425
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	601
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	3 cut(s)	197, 227, 281
TaqI	TCGA	4 cut(s)	78, 94, 495, 623
TaqII	GACCGA	1 cut(s)	533
TasI	AATT	7 cut(s)	44, 60, 146, 354, 361, 497, 538
TauI	GCSGC	2 cut(s)	120, 204
TfiI	GAWTC	1 cut(s)	447
Tru1I	TTAA	2 cut(s)	69, 132
Tru9I	TTAA	2 cut(s)	69, 132
TscAI	CASTG	2 cut(s)	232, 271
TseI	GCWGC	3 cut(s)	523, 580, 583
TspDTI	ATGAA	3 cut(s)	159, 489, 490
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	2 cut(s)	232, 271
Vha464I	CTTAAG	1 cut(s)	131
XapI	RAATTY	3 cut(s)	354, 361, 497
XceI	RCATGY	1 cut(s)	264
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.