MYB-CC type transfactor, LHEQLE motif
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G13040 AT3G13040 AT3G13040 |
| fragaria_vesca | FvH4_6g36430 FvH4_6g36430 FvH4_6g36430 |
| malus_domestica | MD09G1169000.v1.1 MD17G1157800.v1.1 |
| prunus_persica | Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 |
| pyrus_communis | pycom09g08660 pycom17g15110 |
| rosa_chinensis | RchiOBHm_Chr2g0148421 |
| rosa_laevigata | RLG00000020349 |
| rosa_multiflora | Rmu_co8500471.1_g000001 Rmu_sc0007332.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00098750 |
| rosa_rugosa | Rorug02G0406900 Rorug02G0407000 |
| rosa_samantha | Rh2AG465600 Rh2BG478800 Rh2CG452100 Rh2DG487600 |
| rosa_wichuraiana | Rw2G037950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1396 |
| Acc16I | TGCGCA | 1 cut(s) | 1031 |
| Acc36I | ACCTGC | 1 cut(s) | 1264 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 344 |
| AccBSI | CCGCTC | 2 cut(s) | 688, 1205 |
| AccII | CGCG | 2 cut(s) | 153, 233 |
| AciI | CCGC | 6 cut(s) | 686, 732, 1172, 1203, 1215, 1325 |
| AclWI | GGATC | 3 cut(s) | 201, 214, 441 |
| AcoI | YGGCCR | 1 cut(s) | 346 |
| AcsI | RAATTY | 1 cut(s) | 313 |
| AcuI | CTGAAG | 2 cut(s) | 972, 1073 |
| AcyI | GRCGYC | 1 cut(s) | 758 |
| AdeI | CACNNNGTG | 1 cut(s) | 35 |
| AfaI | GTAC | 1 cut(s) | 259 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 344, 644, 719, 720, 738, 795, 1370 |
| AflIII | ACRYGT | 2 cut(s) | 151, 1331 |
| AgsI | TTSAA | 4 cut(s) | 372, 972, 1079, 1355 |
| AjiI | CACGTC | 1 cut(s) | 1332 |
| AjnI | CCWGG | 2 cut(s) | 592, 905 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 198, 230 |
| AluBI | AGCT | 7 cut(s) | 307, 569, 948, 1069, 1093, 1178, 1301 |
| AluI | AGCT | 7 cut(s) | 307, 569, 948, 1069, 1093, 1178, 1301 |
| Alw26I | GTCTC | 3 cut(s) | 32, 162, 1354 |
| AlwI | GGATC | 3 cut(s) | 201, 214, 441 |
| Ama87I | CYCGRG | 1 cut(s) | 719 |
| AoxI | GGCC | 7 cut(s) | 346, 722, 740, 786, 816, 856, 939 |
| ApeKI | GCWGC | 1 cut(s) | 1066 |
| ApoI | RAATTY | 1 cut(s) | 313 |
| AseI | ATTAAT | 1 cut(s) | 1197 |
| AspLEI | GCGC | 2 cut(s) | 233, 1032 |
| AspS9I | GGNCC | 4 cut(s) | 185, 722, 856, 1084 |
| AsuHPI | GGTGA | 4 cut(s) | 621, 701, 1009, 1236 |
| AvaI | CYCGRG | 1 cut(s) | 719 |
| AvaII | GGWCC | 2 cut(s) | 185, 1084 |
| BaeGI | GKGCMC | 1 cut(s) | 290 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 31 |
| BalI | TGGCCA | 1 cut(s) | 348 |
| BamHI | GGATCC | 1 cut(s) | 206 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 61, 93 |
| BbsI | GAAGAC | 1 cut(s) | 267 |
| BbvI | GCAGC | 1 cut(s) | 1078 |
| BccI | CCATC | 4 cut(s) | 388, 747, 797, 983 |
| BceAI | ACGGC | 1 cut(s) | 773 |
| BciT130I | CCWGG | 2 cut(s) | 594, 907 |
| BcoDI | GTCTC | 3 cut(s) | 32, 162, 1354 |
| BfaI | CTAG | 2 cut(s) | 515, 945 |
| BfmI | CTRYAG | 2 cut(s) | 24, 1309 |
| BfuAI | ACCTGC | 1 cut(s) | 1264 |
| BglII | AGATCT | 1 cut(s) | 1128 |
| BisI | GCNGC | 2 cut(s) | 1067, 1325 |
| BlsI | GCNGC | 2 cut(s) | 1068, 1326 |
| Bme1390I | CCNGG | 2 cut(s) | 594, 907 |
| Bme18I | GGWCC | 2 cut(s) | 185, 1084 |
| BmeT110I | CYCGRG | 1 cut(s) | 719 |
| BmgBI | CACGTC | 1 cut(s) | 1332 |
| BmgT120I | GGNCC | 4 cut(s) | 185, 722, 856, 1084 |
| BmiI | GGNNCC | 2 cut(s) | 208, 1085 |
| BmrFI | CCNGG | 2 cut(s) | 594, 907 |
| BmsI | GCATC | 2 cut(s) | 685, 1250 |
| BpiI | GAAGAC | 1 cut(s) | 267 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1206 |
| BpuEI | CTTGAG | 1 cut(s) | 1091 |
| BsaHI | GRCGYC | 1 cut(s) | 758 |
| BsaI | GGTCTC | 1 cut(s) | 1354 |
| BsaJI | CCNNGG | 4 cut(s) | 10, 487, 593, 1020 |
| BsaWI | WCCGGW | 2 cut(s) | 637, 1363 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 344, 644, 719, 720, 738, 795, 1370 |
| Bse118I | RCCGGY | 1 cut(s) | 1151 |
| Bse1I | ACTGG | 3 cut(s) | 132, 261, 349 |
| BseBI | CCWGG | 2 cut(s) | 594, 907 |
| BseDI | CCNNGG | 4 cut(s) | 10, 487, 593, 1020 |
| BseGI | GGATG | 2 cut(s) | 331, 1372 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 344, 644, 719, 720, 738, 795, 1370 |
| BseMII | CTCAG | 2 cut(s) | 1220, 1311 |
| BseNI | ACTGG | 3 cut(s) | 132, 261, 349 |
| BseSI | GKGCMC | 1 cut(s) | 290 |
| BseXI | GCAGC | 1 cut(s) | 1078 |
| Bsh1236I | CGCG | 2 cut(s) | 153, 233 |
| BshFI | GGCC | 7 cut(s) | 348, 724, 742, 788, 818, 858, 941 |
| BsiHKCI | CYCGRG | 1 cut(s) | 719 |
| BsiSI | CCGG | 3 cut(s) | 638, 1152, 1364 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 344, 644, 719, 720, 738, 795, 1370 |
| BsmAI | GTCTC | 3 cut(s) | 32, 162, 1354 |
| BsmBI | CGTCTC | 1 cut(s) | 32 |
| BsmI | GAATGC | 3 cut(s) | 220, 753, 1008 |
| BsnI | GGCC | 7 cut(s) | 348, 724, 742, 788, 818, 858, 941 |
| Bso31I | GGTCTC | 1 cut(s) | 1354 |
| BsoBI | CYCGRG | 1 cut(s) | 719 |
| Bsp1286I | GDGCHC | 1 cut(s) | 290 |
| Bsp143I | GATC | 4 cut(s) | 206, 433, 553, 1128 |
| Bsp19I | CCATGG | 2 cut(s) | 10, 487 |
| BspACI | CCGC | 6 cut(s) | 686, 732, 1172, 1203, 1215, 1325 |
| BspANI | GGCC | 7 cut(s) | 348, 724, 742, 788, 818, 858, 941 |
| BspCNI | CTCAG | 2 cut(s) | 1219, 1312 |
| BspFNI | CGCG | 2 cut(s) | 153, 233 |
| BspHI | TCATGA | 1 cut(s) | 438 |
| BspLI | GGNNCC | 2 cut(s) | 208, 1085 |
| BspMI | ACCTGC | 1 cut(s) | 1264 |
| BspPI | GGATC | 3 cut(s) | 201, 214, 441 |
| BspTNI | GGTCTC | 1 cut(s) | 1354 |
| BsrBI | CCGCTC | 2 cut(s) | 688, 1205 |
| BsrFI | RCCGGY | 1 cut(s) | 1151 |
| BsrI | ACTGG | 3 cut(s) | 132, 261, 349 |
| BssAI | RCCGGY | 1 cut(s) | 1151 |
| BssECI | CCNNGG | 4 cut(s) | 10, 487, 593, 1020 |
| BssMI | GATC | 4 cut(s) | 206, 433, 553, 1128 |
| BssNI | GRCGYC | 1 cut(s) | 758 |
| BssT1I | CCWWGG | 2 cut(s) | 10, 487 |
| Bst2UI | CCWGG | 2 cut(s) | 594, 907 |
| Bst4CI | ACNGT | 4 cut(s) | 60, 68, 627, 1310 |
| Bst6I | CTCTTC | 1 cut(s) | 1350 |
| BstACI | GRCGYC | 1 cut(s) | 758 |
| BstC8I | GCNNGC | 4 cut(s) | 726, 1034, 1153, 1176 |
| BstDEI | CTNAG | 2 cut(s) | 1206, 1320 |
| BstDSI | CCRYGG | 2 cut(s) | 10, 487 |
| BstF5I | GGATG | 2 cut(s) | 331, 1372 |
| BstFNI | CGCG | 2 cut(s) | 153, 233 |
| BstHHI | GCGC | 2 cut(s) | 233, 1032 |
| BstKTI | GATC | 4 cut(s) | 209, 436, 556, 1131 |
| BstMAI | GTCTC | 3 cut(s) | 32, 162, 1354 |
| BstMBI | GATC | 4 cut(s) | 206, 433, 553, 1128 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 748, 757, 815, 1066, 1157 |
| BstNI | CCWGG | 2 cut(s) | 594, 907 |
| BstNSI | RCATGY | 2 cut(s) | 660, 1036 |
| BstSCI | CCNGG | 2 cut(s) | 592, 905 |
| BstSFI | CTRYAG | 2 cut(s) | 24, 1309 |
| BstSLI | GKGCMC | 1 cut(s) | 290 |
| BstUI | CGCG | 2 cut(s) | 153, 233 |
| BstV1I | GCAGC | 1 cut(s) | 1078 |
| BstV2I | GAAGAC | 1 cut(s) | 267 |
| BstX2I | RGATCY | 3 cut(s) | 206, 433, 1128 |
| BstYI | RGATCY | 3 cut(s) | 206, 433, 1128 |
| BsuRI | GGCC | 7 cut(s) | 348, 724, 742, 788, 818, 858, 941 |
| BtgI | CCRYGG | 2 cut(s) | 10, 487 |
| BtgZI | GCGATG | 4 cut(s) | 366, 766, 1002, 1260 |
| BtrI | CACGTC | 1 cut(s) | 1332 |
| BtsCI | GGATG | 2 cut(s) | 331, 1372 |
| BtsI | GCAGTG | 1 cut(s) | 1162 |
| BtsIMutI | CAGTG | 3 cut(s) | 139, 1162, 1187 |
| BveI | ACCTGC | 1 cut(s) | 1264 |
| Cac8I | GCNNGC | 4 cut(s) | 726, 1034, 1153, 1176 |
| CciI | TCATGA | 1 cut(s) | 438 |
| CfoI | GCGC | 2 cut(s) | 233, 1032 |
| Cfr10I | RCCGGY | 1 cut(s) | 1151 |
| Cfr13I | GGNCC | 4 cut(s) | 185, 722, 856, 1084 |
| CseI | GACGC | 1 cut(s) | 766 |
| Csp6I | GTAC | 1 cut(s) | 258 |
| CviQI | GTAC | 1 cut(s) | 258 |
| DdeI | CTNAG | 2 cut(s) | 1206, 1320 |
| DpnI | GATC | 4 cut(s) | 208, 435, 555, 1130 |
| DpnII | GATC | 4 cut(s) | 206, 433, 553, 1128 |
| DraIII | CACNNNGTG | 1 cut(s) | 35 |
| EaeI | YGGCCR | 1 cut(s) | 346 |
| Eam1104I | CTCTTC | 1 cut(s) | 1350 |
| EarI | CTCTTC | 1 cut(s) | 1350 |
| Eco130I | CCWWGG | 2 cut(s) | 10, 487 |
| Eco147I | AGGCCT | 1 cut(s) | 941 |
| Eco31I | GGTCTC | 1 cut(s) | 1354 |
| Eco47I | GGWCC | 2 cut(s) | 185, 1084 |
| Eco57I | CTGAAG | 2 cut(s) | 972, 1073 |
| Eco88I | CYCGRG | 1 cut(s) | 719 |
| EcoO109I | RGGNCCY | 2 cut(s) | 856, 1084 |
| EcoRII | CCWGG | 2 cut(s) | 592, 905 |
| EcoT14I | CCWWGG | 2 cut(s) | 10, 487 |
| ErhI | CCWWGG | 2 cut(s) | 10, 487 |
| Esp3I | CGTCTC | 1 cut(s) | 32 |
| FauNDI | CATATG | 1 cut(s) | 343 |
| Fnu4HI | GCNGC | 2 cut(s) | 1067, 1325 |
| FokI | GGATG | 2 cut(s) | 318, 1379 |
| Fsp4HI | GCNGC | 2 cut(s) | 1067, 1325 |
| FspBI | CTAG | 2 cut(s) | 515, 945 |
| FspI | TGCGCA | 1 cut(s) | 1031 |
| GlaI | GCGC | 2 cut(s) | 232, 1031 |
| GluI | GCNGC | 2 cut(s) | 1067, 1325 |
| HaeIII | GGCC | 7 cut(s) | 348, 724, 742, 788, 818, 858, 941 |
| HapII | CCGG | 3 cut(s) | 638, 1152, 1364 |
| HgaI | GACGC | 1 cut(s) | 766 |
| HhaI | GCGC | 2 cut(s) | 233, 1032 |
| Hin1I | GRCGYC | 1 cut(s) | 758 |
| Hin6I | GCGC | 2 cut(s) | 231, 1030 |
| HinP1I | GCGC | 2 cut(s) | 231, 1030 |
| HincII | GTYRAC | 1 cut(s) | 793 |
| HindII | GTYRAC | 1 cut(s) | 793 |
| HindIII | AAGCTT | 1 cut(s) | 1176 |
| HpaI | GTTAAC | 1 cut(s) | 793 |
| HpaII | CCGG | 3 cut(s) | 638, 1152, 1364 |
| HphI | GGTGA | 4 cut(s) | 621, 701, 1009, 1236 |
| Hpy166II | GTNNAC | 2 cut(s) | 185, 793 |
| Hpy188I | TCNGA | 8 cut(s) | 112, 430, 553, 825, 952, 1050, 1267, 1321 |
| Hpy188III | TCNNGA | 2 cut(s) | 439, 1352 |
| Hpy8I | GTNNAC | 2 cut(s) | 185, 793 |
| HpyAV | CCTTC | 5 cut(s) | 87, 107, 931, 1097, 1236 |
| HpyCH4III | ACNGT | 4 cut(s) | 60, 68, 627, 1310 |
| HpyCH4IV | ACGT | 3 cut(s) | 241, 994, 1331 |
| HpyCH4V | TGCA | 6 cut(s) | 202, 460, 1036, 1060, 1123, 1241 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 748, 757, 815, 1066, 1157 |
| HpyF3I | CTNAG | 2 cut(s) | 1206, 1320 |
| HpySE526I | ACGT | 3 cut(s) | 241, 994, 1331 |
| Hsp92I | GRCGYC | 1 cut(s) | 758 |
| HspAI | GCGC | 2 cut(s) | 231, 1030 |
| KroI | GCCGGC | 1 cut(s) | 1151 |
| KroNI | GCCGGC | 1 cut(s) | 1153 |
| KspAI | GTTAAC | 1 cut(s) | 793 |
| Kzo9I | GATC | 4 cut(s) | 206, 433, 553, 1128 |
| LmnI | GCTCC | 1 cut(s) | 1005 |
| Lsp1109I | GCAGC | 1 cut(s) | 1078 |
| LweI | GCATC | 2 cut(s) | 685, 1250 |
| MaeI | CTAG | 2 cut(s) | 515, 945 |
| MaeII | ACGT | 3 cut(s) | 241, 994, 1331 |
| MaeIII | GTNAC | 6 cut(s) | 5, 506, 537, 627, 707, 1313 |
| MalI | GATC | 4 cut(s) | 208, 435, 555, 1130 |
| MbiI | CCGCTC | 2 cut(s) | 688, 1205 |
| MboI | GATC | 4 cut(s) | 206, 433, 553, 1128 |
| MboII | GAAGA | 9 cut(s) | 185, 237, 267, 270, 317, 941, 965, 1138, 1367 |
| MflI | RGATCY | 3 cut(s) | 206, 433, 1128 |
| MhlI | GDGCHC | 1 cut(s) | 290 |
| MlsI | TGGCCA | 1 cut(s) | 348 |
| MluCI | AATT | 7 cut(s) | 70, 313, 454, 530, 542, 1198, 1391 |
| MluI | ACGCGT | 1 cut(s) | 151 |
| MluNI | TGGCCA | 1 cut(s) | 348 |
| MlyI | GAGTC | 4 cut(s) | 13, 60, 1262, 1310 |
| MmeI | TCCRAC | 1 cut(s) | 362 |
| Mox20I | TGGCCA | 1 cut(s) | 348 |
| MroNI | GCCGGC | 1 cut(s) | 1151 |
| MscI | TGGCCA | 1 cut(s) | 348 |
| MseI | TTAA | 4 cut(s) | 792, 836, 978, 1197 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1037 |
| Msp20I | TGGCCA | 1 cut(s) | 348 |
| MspI | CCGG | 3 cut(s) | 638, 1152, 1364 |
| MspR9I | CCNGG | 2 cut(s) | 594, 907 |
| Mva1269I | GAATGC | 3 cut(s) | 220, 753, 1008 |
| MvaI | CCWGG | 2 cut(s) | 594, 907 |
| MvnI | CGCG | 2 cut(s) | 153, 233 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 748, 757, 815, 1066, 1157 |
| NaeI | GCCGGC | 1 cut(s) | 1153 |
| NcoI | CCATGG | 2 cut(s) | 10, 487 |
| NdeI | CATATG | 1 cut(s) | 343 |
| NdeII | GATC | 4 cut(s) | 206, 433, 553, 1128 |
| NgoMIV | GCCGGC | 1 cut(s) | 1151 |
| NlaIV | GGNNCC | 2 cut(s) | 208, 1085 |
| NmuCI | GTSAC | 5 cut(s) | 5, 506, 627, 707, 1313 |
| NsbI | TGCGCA | 1 cut(s) | 1031 |
| NspI | RCATGY | 2 cut(s) | 660, 1036 |
| PaeI | GCATGC | 1 cut(s) | 1036 |
| PagI | TCATGA | 1 cut(s) | 438 |
| PceI | AGGCCT | 1 cut(s) | 941 |
| PctI | GAATGC | 3 cut(s) | 220, 753, 1008 |
| PdiI | GCCGGC | 1 cut(s) | 1153 |
| PfeI | GAWTC | 7 cut(s) | 107, 176, 368, 467, 589, 616, 1138 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 344 |
| PkrI | GCNGC | 2 cut(s) | 1068, 1326 |
| PleI | GAGTC | 4 cut(s) | 12, 59, 1262, 1310 |
| PpsI | GAGTC | 4 cut(s) | 12, 59, 1262, 1310 |
| PpuMI | RGGWCCY | 1 cut(s) | 1084 |
| PshBI | ATTAAT | 1 cut(s) | 1197 |
| PsiI | TTATAA | 1 cut(s) | 1396 |
| Psp5II | RGGWCCY | 1 cut(s) | 1084 |
| Psp6I | CCWGG | 2 cut(s) | 592, 905 |
| PspGI | CCWGG | 2 cut(s) | 592, 905 |
| PspN4I | GGNNCC | 2 cut(s) | 208, 1085 |
| PspPI | GGNCC | 4 cut(s) | 185, 722, 856, 1084 |
| PspPPI | RGGWCCY | 1 cut(s) | 1084 |
| PsuI | RGATCY | 3 cut(s) | 206, 433, 1128 |
| RsaI | GTAC | 1 cut(s) | 259 |
| RsaNI | GTAC | 1 cut(s) | 258 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1037 |
| SaqAI | TTAA | 4 cut(s) | 792, 836, 978, 1197 |
| SatI | GCNGC | 2 cut(s) | 1067, 1325 |
| Sau3AI | GATC | 4 cut(s) | 206, 433, 553, 1128 |
| Sau96I | GGNCC | 4 cut(s) | 185, 722, 856, 1084 |
| SchI | GAGTC | 4 cut(s) | 13, 60, 1262, 1310 |
| ScrFI | CCNGG | 2 cut(s) | 594, 907 |
| SduI | GDGCHC | 1 cut(s) | 290 |
| SfaNI | GCATC | 2 cut(s) | 685, 1250 |
| SfcI | CTRYAG | 2 cut(s) | 24, 1309 |
| SinI | GGWCC | 2 cut(s) | 185, 1084 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1037 |
| SmlI | CTYRAG | 1 cut(s) | 1070 |
| SmoI | CTYRAG | 1 cut(s) | 1070 |
| SphI | GCATGC | 1 cut(s) | 1036 |
| Sse9I | AATT | 7 cut(s) | 70, 313, 454, 530, 542, 1198, 1391 |
| SseBI | AGGCCT | 1 cut(s) | 941 |
| SsiI | CCGC | 6 cut(s) | 686, 732, 1172, 1203, 1215, 1325 |
| SspMI | CTAG | 2 cut(s) | 515, 945 |
| StuI | AGGCCT | 1 cut(s) | 941 |
| StyD4I | CCNGG | 2 cut(s) | 592, 905 |
| StyI | CCWWGG | 2 cut(s) | 10, 487 |
| TaaI | ACNGT | 4 cut(s) | 60, 68, 627, 1310 |
| TaiI | ACGT | 3 cut(s) | 244, 997, 1334 |
| TaqI | TCGA | 1 cut(s) | 1380 |
| TasI | AATT | 7 cut(s) | 70, 313, 454, 530, 542, 1198, 1391 |
| TauI | GCSGC | 1 cut(s) | 1327 |
| TfiI | GAWTC | 7 cut(s) | 107, 176, 368, 467, 589, 616, 1138 |
| Tru1I | TTAA | 4 cut(s) | 792, 836, 978, 1197 |
| Tru9I | TTAA | 4 cut(s) | 792, 836, 978, 1197 |
| TscAI | CASTG | 3 cut(s) | 139, 1162, 1194 |
| TseFI | GTSAC | 5 cut(s) | 5, 506, 627, 707, 1313 |
| TseI | GCWGC | 1 cut(s) | 1066 |
| Tsp45I | GTSAC | 5 cut(s) | 5, 506, 627, 707, 1313 |
| TspDTI | ATGAA | 6 cut(s) | 132, 154, 270, 455, 860, 1218 |
| TspGWI | ACGGA | 2 cut(s) | 492, 590 |
| TspRI | CASTG | 3 cut(s) | 139, 1162, 1194 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 344 |
| VpaK11BI | GGWCC | 2 cut(s) | 185, 1084 |
| VspI | ATTAAT | 1 cut(s) | 1197 |
| XapI | RAATTY | 1 cut(s) | 313 |
| XceI | RCATGY | 2 cut(s) | 660, 1036 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 750 |
| XspI | CTAG | 2 cut(s) | 515, 945 |