Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004599

Physical Location & Seq

Genomic Coordinates Reverse (-)

13526325 .. 13529533

Gene Structure 3209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGCCTGGGTACACTTCTCATGGTTCCTTTTCAATGCCTTTTGATGCTTCTTTGGGGCCAAGATTTAGTGGTCAAACTGTTGATGTTTCGAGAAGGGAGAGAATTCCCCATGACGGTGATATGCAACACCCTAGTAGATTCTATGGGCAACATGGGCCAATGCTCCAGCCACCTTTTGTGGATCCCCTTTATACACAATACTATGCTCGTTCTTTGGAGGATTCATATAGTGCTTCAATTCAATATGGTTACTTGCCATCAAGGGGCCAACTTTCGCAACAAGAATTAAATGCTAGTGCTTATACGGGTGGCCCAAAATTCCACTCTTCAACCAATGGTAATCAGGGTATTCCAAGTCCAAGAAATGTGGGAATCAATGGTAGTGATTATTATGGACTTCCTTCTGGCATGGGTGTAATGACACAGTTTCCAACCTCTCCTCTTGGTAGTCCAATATTGCCATCATCTCCAATGGGCAGAACGAATCATTTTGGTCGGAAATATGAATTGAGGACTCCTCAAGGTTCTGTTAGTGGAGTATATTCTGGGTGGCAAAGGCAGAGAAGCTCCATCTTGATTGATCCTAGAAGACACTCTTTACTTGAAGAACTGAACTATTATAATTTTTTAATATTCATATATAACTTCAGTGTTGATCAACATGGGAGTCGATTTATTCAACAGAAGCTAGAATACAGCAGTGCTGAAGACAAGGTATCTGTTTTCAAAGAGATTCTTCCAAGTGCTTCAAAATTAATGACGGATGTATTTGGAAATTATGTTATTCAAAAGGGACTTTTGAATTCTGTGGATGGCCTTTTAAAATTGTATGATTCTTATATTTTTATGTTACAGTTTTTTGAATATGGGACTCCTGAGCAGAAAAAGGAGCTTCCAGATCAACTTGCTGGGCAAATGTTGCCTTTAAGTTTGCAGATGTATGGTTGTTGTGTAATCCAGAAGATTTTTACCAATGGAAATCATGTAATACAGAAGTGTATAGAATGCATTCCCACAGAGAAAATTGGATTTATCATTTCTGCTTTTCAAGGACAAGTTGCCGCACTTTCTACTCATCCCTATGGTTGTCGTGTCATACAGAGAGTTTTGGAGCATTGTTCGGATGACCTTCAAAGTCAATGTATAGTTGATGAGATCTTGGAATCTGCTTATGATCTACATGAGTATTGTGGATTCTGCTTGACTCTTAGGGACCATGCGGAGTTTGAAAGTGTAGATATTGAATGCTGCATAATGCTGGTTTTATGTTTTCTGTATATTGAGTTTCGTCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATTCCAGTCAATGATGAAGGACCAATTTGCCAATTATGTGGTTCAAAAGGTTCTTGAAACAAGCAATGATAGACAGCGGGAAATACTGCTCAAACTTATAAGAGTTCATATTGATGCTCTGAAGAAATATACTTATGGGAAACACATAGTTGTTCATTTTCAACAGCTATCCGGTGAAGGTTTGTCAATTTCCCGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006417 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009651 GO:0009819 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098542 GO:1901363 GO:1901700 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NABP PUF

Protein Analysis

509

Amino Acids

57.98

Weight (kDa)

6.46

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NABP	PF07990	35 - 203	1.3e-08	Nucleic acid binding protein NABP
PUF	PF00806	213 - 246	4e-10	Pumilio-family RNA binding repeat
PUF	PF00806	352 - 387	2e-13	Pumilio-family RNA binding repeat
PUF	PF00806	445 - 475	1.2e-07	Pumilio-family RNA binding repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20250 AT3G20250 AT3G20250
fragaria_vesca	FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910
malus_domestica	MD09G1165700.v1.1 MD17G1161900.v1.1
prunus_persica	Prupe.3G023300_v2.0.a1 Prupe.3G023300_v2.0.a1 Prupe.3G023300_v2.0.a1
pyrus_communis	pycom07g18900 pycom09g08300 pycom17g15500
rosa_chinensis	RchiOBHm_Chr2g0149341
rosa_laevigata	RLG00000020394
rosa_multiflora	Rmu_sc0000873.1_g000017
rosa_roxburghii	Rroxscaffold_2G00098200
rosa_rugosa	Rorug02G0410600 Rorug02G0410700 Rorug02G0410800
rosa_samantha	Rh2AG471400 Rh2BG483600 Rh2CG457300 Rh2DG492700
rosa_wichuraiana	Rw2G038360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	621, 1424
AciI	CCGC	3 cut(s)	1062, 1220, 1402
AclWI	GGATC	3 cut(s)	176, 189, 575
AcsI	RAATTY	3 cut(s)	102, 317, 802
AcuI	CTGAAG	3 cut(s)	631, 726, 1466
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	113, 263
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	4 cut(s)	567, 688, 892, 1492
AluI	AGCT	4 cut(s)	567, 688, 892, 1492
AlwI	GGATC	3 cut(s)	176, 189, 575
AoxI	GGCC	5 cut(s)	56, 155, 265, 310, 814
ApeKI	GCWGC	1 cut(s)	1248
ApoI	RAATTY	3 cut(s)	102, 317, 802
AseI	ATTAAT	1 cut(s)	755
Asp700I	GAANNNNTTC	1 cut(s)	1008
AspS9I	GGNCC	6 cut(s)	56, 155, 265, 311, 1213, 1345
AsuHPI	GGTGA	2 cut(s)	128, 1511
AvaII	GGWCC	2 cut(s)	1213, 1345
BamHI	GGATCC	1 cut(s)	181
BarI	GAAGNNNNNNTAC	2 cut(s)	677, 709
BbsI	GAAGAC	2 cut(s)	595, 714
BbvI	GCAGC	1 cut(s)	1235
BccI	CCATC	4 cut(s)	265, 469, 578, 806
BciT130I	CCWGG	1 cut(s)	6
BclI	TGATCA	1 cut(s)	655
BfaI	CTAG	4 cut(s)	132, 294, 585, 689
BglII	AGATCT	1 cut(s)	1155
BisI	GCNGC	2 cut(s)	1062, 1249
BlsI	GCNGC	2 cut(s)	1063, 1250
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	2 cut(s)	1213, 1345
BmgT120I	GGNCC	6 cut(s)	56, 155, 265, 311, 1213, 1345
BmiI	GGNNCC	5 cut(s)	25, 57, 183, 266, 1214
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	2 cut(s)	34, 1429
BpiI	GAAGAC	2 cut(s)	595, 714
BplI	GAGNNNNNCTC	2 cut(s)	502, 534
BpmI	CTGGAG	1 cut(s)	149
Bpu10I	CCTNAGC	1 cut(s)	876
BpuEI	CTTGAG	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	1496
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 263
Bse1I	ACTGG	1 cut(s)	1330
Bse3DI	GCAATG	1 cut(s)	1396
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	4 cut(s)	769, 817, 1075, 1129
BseLI	CCNNNNNNNGG	2 cut(s)	113, 263
BseMI	GCAATG	1 cut(s)	1396
BseMII	CTCAG	1 cut(s)	867
BseNI	ACTGG	1 cut(s)	1330
BseRI	GAGGAG	2 cut(s)	429, 507
BseXI	GCAGC	1 cut(s)	1235
BseYI	CCCAGC	1 cut(s)	908
BshFI	GGCC	5 cut(s)	58, 157, 267, 312, 816
BsiSI	CCGG	1 cut(s)	1497
BslFI	GGGAC	3 cut(s)	807, 883, 1226
BslI	CCNNNNNNNGG	2 cut(s)	113, 263
BsmFI	GGGAC	3 cut(s)	807, 883, 1226
BsmI	GAATGC	3 cut(s)	1008, 1010, 1250
BsnI	GGCC	5 cut(s)	58, 157, 267, 312, 816
Bsp143I	GATC	6 cut(s)	181, 580, 655, 898, 1155, 1174
BspACI	CCGC	3 cut(s)	1062, 1220, 1402
BspANI	GGCC	5 cut(s)	58, 157, 267, 312, 816
BspCNI	CTCAG	1 cut(s)	868
BspLI	GGNNCC	5 cut(s)	25, 57, 183, 266, 1214
BspPI	GGATC	3 cut(s)	176, 189, 575
BsrDI	GCAATG	1 cut(s)	1396
BsrI	ACTGG	1 cut(s)	1330
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	6 cut(s)	181, 580, 655, 898, 1155, 1174
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	4 cut(s)	79, 116, 426, 855
Bst6I	CTCTTC	1 cut(s)	331
BstAPI	GCANNNNNTGC	1 cut(s)	919
BstDEI	CTNAG	2 cut(s)	876, 1208
BstF5I	GGATG	4 cut(s)	769, 817, 1075, 1129
BstKTI	GATC	6 cut(s)	184, 583, 658, 901, 1158, 1177
BstMBI	GATC	6 cut(s)	181, 580, 655, 898, 1155, 1174
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 919
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	1 cut(s)	4
BstV1I	GCAGC	1 cut(s)	1235
BstV2I	GAAGAC	2 cut(s)	595, 714
BstX2I	RGATCY	2 cut(s)	181, 1155
BstXI	CCANNNNNNTGG	1 cut(s)	1363
BstYI	RGATCY	2 cut(s)	181, 1155
BsuRI	GGCC	5 cut(s)	58, 157, 267, 312, 816
BtsCI	GGATG	4 cut(s)	769, 817, 1075, 1129
BtsI	GCAGTG	1 cut(s)	706
BtsIMutI	CAGTG	2 cut(s)	655, 706
Cfr13I	GGNCC	6 cut(s)	56, 155, 265, 311, 1213, 1345
Csp6I	GTAC	1 cut(s)	10
CspCI	CAANNNNNGTGG	2 cut(s)	348, 383
CviAII	CATG	8 cut(s)	20, 110, 152, 409, 662, 983, 1181, 1217
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	2 cut(s)	876, 1208
DpnI	GATC	6 cut(s)	183, 582, 657, 900, 1157, 1176
DpnII	GATC	6 cut(s)	181, 580, 655, 898, 1155, 1174
DraI	TTTAAA	1 cut(s)	822
Eam1104I	CTCTTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	331
Eco47I	GGWCC	2 cut(s)	1213, 1345
Eco57I	CTGAAG	3 cut(s)	631, 726, 1466
EcoRI	GAATTC	2 cut(s)	102, 802
EcoRII	CCWGG	1 cut(s)	4
EcoT22I	ATGCAT	1 cut(s)	1010
FaeI	CATG	8 cut(s)	23, 113, 155, 412, 665, 986, 1184, 1220
FalI	AAGNNNNNCTT	4 cut(s)	580, 612, 720, 752
FaqI	GGGAC	3 cut(s)	807, 883, 1226
FatI	CATG	8 cut(s)	19, 109, 151, 408, 661, 982, 1180, 1216
FauI	CCCGC	1 cut(s)	1395
FbaI	TGATCA	1 cut(s)	655
Fnu4HI	GCNGC	2 cut(s)	1062, 1249
FokI	GGATG	4 cut(s)	776, 824, 1062, 1136
Fsp4HI	GCNGC	2 cut(s)	1062, 1249
FspBI	CTAG	4 cut(s)	132, 294, 585, 689
GluI	GCNGC	2 cut(s)	1062, 1249
GsaI	CCCAGC	1 cut(s)	912
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	5 cut(s)	58, 157, 267, 312, 816
HapII	CCGG	1 cut(s)	1497
Hin1II	CATG	8 cut(s)	23, 113, 155, 412, 665, 986, 1184, 1220
HpaII	CCGG	1 cut(s)	1497
HphI	GGTGA	2 cut(s)	128, 1511
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	3 cut(s)	498, 1123, 1446
Hpy188III	TCNNGA	6 cut(s)	90, 574, 875, 896, 958, 1379
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	1293
HpyAV	CCTTC	5 cut(s)	87, 411, 1139, 1336, 1496
HpyCH4III	ACNGT	4 cut(s)	79, 116, 426, 855
HpyCH4V	TGCA	4 cut(s)	124, 934, 1008, 1251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 919
HpyF3I	CTNAG	2 cut(s)	876, 1208
Hsp92II	CATG	8 cut(s)	23, 113, 155, 412, 665, 986, 1184, 1220
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	6 cut(s)	181, 580, 655, 898, 1155, 1174
LmnI	GCTCC	4 cut(s)	168, 572, 889, 1111
Lsp1109I	GCAGC	1 cut(s)	1235
LweI	GCATC	2 cut(s)	34, 1429
MaeI	CTAG	4 cut(s)	132, 294, 585, 689
MaeIII	GTNAC	2 cut(s)	248, 849
MalI	GATC	6 cut(s)	183, 582, 657, 900, 1157, 1176
MboI	GATC	6 cut(s)	181, 580, 655, 898, 1155, 1174
MboII	GAAGA	7 cut(s)	318, 600, 617, 719, 728, 973, 1459
MflI	RGATCY	2 cut(s)	181, 1155
MlyI	GAGTC	4 cut(s)	508, 676, 865, 1198
MmeI	TCCRAC	2 cut(s)	455, 476
MnlI	CCTC	5 cut(s)	211, 445, 450, 504, 528
Mph1103I	ATGCAT	1 cut(s)	1010
MroXI	GAANNNNTTC	1 cut(s)	1008
MseI	TTAA	6 cut(s)	287, 629, 755, 821, 926, 1322
MslI	CAYNNNNRTG	3 cut(s)	114, 1080, 1437
MspA1I	CMGCKG	1 cut(s)	1402
MspI	CCGG	1 cut(s)	1497
MspR9I	CCNGG	1 cut(s)	6
Mva1269I	GAATGC	3 cut(s)	1008, 1010, 1250
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	2 cut(s)	154, 919
NdeII	GATC	6 cut(s)	181, 580, 655, 898, 1155, 1174
NlaIII	CATG	8 cut(s)	23, 113, 155, 412, 665, 986, 1184, 1220
NlaIV	GGNNCC	5 cut(s)	25, 57, 183, 266, 1214
NsiI	ATGCAT	1 cut(s)	1010
PctI	GAATGC	3 cut(s)	1008, 1010, 1250
PdmI	GAANNNNTTC	1 cut(s)	1008
PfeI	GAWTC	8 cut(s)	138, 221, 372, 484, 733, 833, 1163, 1194
PkrI	GCNGC	2 cut(s)	1063, 1250
PleI	GAGTC	4 cut(s)	508, 675, 865, 1198
PpsI	GAGTC	4 cut(s)	508, 675, 865, 1198
PshBI	ATTAAT	1 cut(s)	755
PsiI	TTATAA	2 cut(s)	621, 1424
Psp6I	CCWGG	1 cut(s)	4
PspFI	CCCAGC	1 cut(s)	908
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	5 cut(s)	25, 57, 183, 266, 1214
PspPI	GGNCC	6 cut(s)	56, 155, 265, 311, 1213, 1345
PsuI	RGATCY	2 cut(s)	181, 1155
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	3 cut(s)	114, 1080, 1437
SaqAI	TTAA	6 cut(s)	287, 629, 755, 821, 926, 1322
SatI	GCNGC	2 cut(s)	1062, 1249
Sau3AI	GATC	6 cut(s)	181, 580, 655, 898, 1155, 1174
Sau96I	GGNCC	6 cut(s)	56, 155, 265, 311, 1213, 1345
SchI	GAGTC	4 cut(s)	508, 676, 865, 1198
ScrFI	CCNGG	1 cut(s)	6
SfaNI	GCATC	2 cut(s)	34, 1429
SinI	GGWCC	2 cut(s)	1213, 1345
SmiMI	CAYNNNNRTG	3 cut(s)	114, 1080, 1437
SmlI	CTYRAG	1 cut(s)	519
SmoI	CTYRAG	1 cut(s)	519
SsiI	CCGC	3 cut(s)	1062, 1220, 1402
SspI	AATATT	3 cut(s)	456, 633, 1326
SspMI	CTAG	4 cut(s)	132, 294, 585, 689
StyD4I	CCNGG	1 cut(s)	4
TaaI	ACNGT	4 cut(s)	79, 116, 426, 855
TaqI	TCGA	2 cut(s)	89, 670
TauI	GCSGC	1 cut(s)	1064
TfiI	GAWTC	8 cut(s)	138, 221, 372, 484, 733, 833, 1163, 1194
Tru1I	TTAA	6 cut(s)	287, 629, 755, 821, 926, 1322
Tru9I	TTAA	6 cut(s)	287, 629, 755, 821, 926, 1322
TscAI	CASTG	2 cut(s)	655, 706
TseI	GCWGC	1 cut(s)	1248
TspDTI	ATGAA	6 cut(s)	213, 519, 625, 1355, 1421, 1469
TspGWI	ACGGA	1 cut(s)	776
TspRI	CASTG	2 cut(s)	655, 706
VpaK11BI	GGWCC	2 cut(s)	1213, 1345
VspI	ATTAAT	1 cut(s)	755
XapI	RAATTY	3 cut(s)	102, 317, 802
XmnI	GAANNNNTTC	1 cut(s)	1008
XspI	CTAG	4 cut(s)	132, 294, 585, 689
Zsp2I	ATGCAT	1 cut(s)	1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.