pycom17g16940

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0009631
Physical Location & Seq
Reverse (-)
14871583 .. 14872564
982 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 942 bp
ATGGAGGGGATCCGGAAATGCGGAAATGATCCAAATCCCAGCAAAAGCACCCACCAAAAAAGCAAAAGCATTAACAAGCAAAGACCGACCGACCCACCCCCCATAAAAAACCAAAAAAGCCAAGAACTAAAGCCAAGGTGTGAGAAGGAAAGCTCACTTCTCACCTCTCTCCTCCGCCCAGTCTCTCATCCATTTTCTAAACAAAAAGCCCAAAACACTATGGAAGAAGAGGAAAACATGTCGCCACCATTTTGGCTCCAAGCCTCCAATTCTTTCCGGCAGTCCAACCATCGCAGCAGCCGCCTCGGCCGCTTTGCCTCCTCCGTTTTCTTCAGCTCCGGCGCTTTCGTTTTCGCCTTGATCGTCATAGTTCTGGTATTCATTTTCTTCGTAATCCCATCATTCTCGTCCTTCACTTCTCAAATTTTTAGACCCCATTTGGTAAAAAAAAGTTGGGATTCTCTCAACCTCGTCCTCGTACTCTTCGCAATTGTTTGCGGATTTCTCAGCCGAAACAGCTACAACGACAACAATGTTAGCAGTCCCATGTCGTACGATGTTTCTTCTCCGCAGAAATTTGAGAAGTCAAACCCATCAACCCCACGTCAGTGGTACGATCAGTATTCAGATCGGAGTCGGACGGTCGATAATCAGAGCAGTGGTGCTACTAGTACGATGGACAGAGGAGTGAGGACCAGCAGCTCGTACCCGGATCTGCGTCAACAGGAACCTTCATGGAATGTGGTTAGGGACGAACGATGGCGATCCCACGACGATACCCATGTGGCCGACGACACCCATGAGGCCGGTTATCCGATTCCGGGTTCGGATCCGCAGCATCAGCTCCACCGCCCTCACCGGTCATGGCATGAAGAACCGGCAGAGGTTCTAGCACATGAAGAACCGCGCATGAAGAACCGGCAGAGGTTCAAGCACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231
Pfam Domains
Protein Families
DUF761

Protein Analysis

314

Amino Acids

36.06

Weight (kDa)

9.32

Isoelectric Point (pI)

59.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 907
AccIII TCCGGA 1 cut(s) 12
AciI CCGC 9 cut(s) 21, 175, 301, 310, 498, 569, 833, 850, 905
AclWI GGATC 7 cut(s) 4, 17, 23, 720, 759, 824, 837
AcoI YGGCCR 2 cut(s) 307, 786
AcsI RAATTY 2 cut(s) 423, 575
AcuI CTGAAG 1 cut(s) 316
AfaI GTAC 5 cut(s) 480, 554, 614, 673, 707
AfiI CCNNNNNNNGG 1 cut(s) 821
AflIII ACRYGT 1 cut(s) 237
AgeI ACCGGT 1 cut(s) 858
AgsI TTSAA 1 cut(s) 931
AhlI ACTAGT 1 cut(s) 668
AjiI CACGTC 1 cut(s) 605
AleI CACNNNNGTG 1 cut(s) 607
AluBI AGCT 5 cut(s) 153, 336, 519, 702, 844
AluI AGCT 5 cut(s) 153, 336, 519, 702, 844
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 7 cut(s) 4, 17, 23, 720, 759, 824, 837
Aor13HI TCCGGA 1 cut(s) 12
AoxI GGCC 3 cut(s) 307, 786, 804
ApeKI GCWGC 4 cut(s) 294, 297, 699, 835
ApoI RAATTY 2 cut(s) 423, 575
AsiGI ACCGGT 1 cut(s) 858
AspLEI GCGC 2 cut(s) 344, 909
AspS9I GGNCC 1 cut(s) 693
AsuC2I CCSGG 2 cut(s) 710, 822
AsuHPI GGTGA 2 cut(s) 154, 848
AvaII GGWCC 1 cut(s) 693
BaeI ACNNNNGTAYC 2 cut(s) 768, 801
BamHI GGATCC 2 cut(s) 9, 829
BauI CACGAG 1 cut(s) 935
BbvI GCAGC 4 cut(s) 306, 309, 711, 847
BccI CCATC 5 cut(s) 297, 406, 601, 670, 753
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BcnI CCSGG 2 cut(s) 710, 822
BcoDI GTCTC 1 cut(s) 187
BcuI ACTAGT 1 cut(s) 668
BfaI CTAG 2 cut(s) 669, 890
BfoI RGCGCY 1 cut(s) 345
BglI GCCNNNNNGGC 1 cut(s) 306
BisI GCNGC 6 cut(s) 295, 298, 301, 310, 700, 836
BlsI GCNGC 6 cut(s) 296, 299, 302, 311, 701, 837
Bme1390I CCNGG 2 cut(s) 710, 822
Bme18I GGWCC 1 cut(s) 693
BmgBI CACGTC 1 cut(s) 605
BmgT120I GGNCC 1 cut(s) 693
BmiI GGNNCC 4 cut(s) 11, 257, 729, 831
BmrFI CCNGG 2 cut(s) 710, 822
BmrI ACTGGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 847
BmuI ACTGGG 1 cut(s) 173
BpuMI CCSGG 2 cut(s) 710, 822
BsaBI GATNNNNATC 2 cut(s) 33, 763
BsaJI CCNNGG 2 cut(s) 134, 304
BsaWI WCCGGW 2 cut(s) 12, 858
Bsc4I CCNNNNNNNGG 1 cut(s) 821
Bse118I RCCGGY 4 cut(s) 806, 858, 877, 918
Bse1I ACTGG 1 cut(s) 179
Bse8I GATNNNNATC 2 cut(s) 33, 763
BseAI TCCGGA 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 134, 304
BseGI GGATG 1 cut(s) 187
BseJI GATNNNNATC 2 cut(s) 33, 763
BseLI CCNNNNNNNGG 1 cut(s) 821
BseMII CTCAG 1 cut(s) 520
BseNI ACTGG 1 cut(s) 179
BseRI GAGGAG 3 cut(s) 161, 310, 699
BseX3I CGGCCG 1 cut(s) 307
BseXI GCAGC 4 cut(s) 306, 309, 711, 847
BseYI CCCAGC 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 907
Bsh1285I CGRYCG 3 cut(s) 90, 310, 645
BshFI GGCC 3 cut(s) 309, 788, 806
BshTI ACCGGT 1 cut(s) 858
BsiEI CGRYCG 3 cut(s) 90, 310, 645
BsiSI CCGG 9 cut(s) 13, 277, 339, 710, 807, 821, 859, 878, 919
BsiWI CGTACG 1 cut(s) 552
BslFI GGGAC 2 cut(s) 528, 764
BslI CCNNNNNNNGG 1 cut(s) 821
BsmAI GTCTC 1 cut(s) 187
BsmFI GGGAC 2 cut(s) 528, 764
BsnI GGCC 3 cut(s) 309, 788, 806
Bsp13I TCCGGA 1 cut(s) 12
Bsp143I GATC 8 cut(s) 9, 28, 360, 616, 628, 712, 764, 829
BspACI CCGC 9 cut(s) 21, 175, 301, 310, 498, 569, 833, 850, 905
BspANI GGCC 3 cut(s) 309, 788, 806
BspCNI CTCAG 1 cut(s) 519
BspEI TCCGGA 1 cut(s) 12
BspFNI CGCG 1 cut(s) 907
BspLI GGNNCC 4 cut(s) 11, 257, 729, 831
BspPI GGATC 7 cut(s) 4, 17, 23, 720, 759, 824, 837
BsrFI RCCGGY 4 cut(s) 806, 858, 877, 918
BsrI ACTGG 1 cut(s) 179
BssAI RCCGGY 4 cut(s) 806, 858, 877, 918
BssECI CCNNGG 2 cut(s) 134, 304
BssMI GATC 8 cut(s) 9, 28, 360, 616, 628, 712, 764, 829
BssSI CACGAG 1 cut(s) 935
BssT1I CCWWGG 1 cut(s) 134
Bst2BI CACGAG 1 cut(s) 935
Bst4CI ACNGT 1 cut(s) 643
Bst6I CTCTTC 2 cut(s) 222, 488
BstDEI CTNAG 1 cut(s) 506
BstF5I GGATG 1 cut(s) 187
BstFNI CGCG 1 cut(s) 907
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 2 cut(s) 344, 909
BstKTI GATC 8 cut(s) 12, 31, 363, 619, 631, 715, 767, 832
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 8 cut(s) 9, 28, 360, 616, 628, 712, 764, 829
BstMCI CGRYCG 3 cut(s) 90, 310, 645
BstMWI GCNNNNNNNGC 5 cut(s) 300, 306, 309, 516, 841
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 2 cut(s) 708, 820
BstUI CGCG 1 cut(s) 907
BstV1I GCAGC 4 cut(s) 306, 309, 711, 847
BstX2I RGATCY 3 cut(s) 9, 712, 829
BstXI CCANNNNNNTGG 2 cut(s) 252, 609
BstYI RGATCY 3 cut(s) 9, 712, 829
BstZI CGGCCG 1 cut(s) 307
BsuRI GGCC 3 cut(s) 309, 788, 806
BtgZI GCGATG 1 cut(s) 275
BtrI CACGTC 1 cut(s) 605
BtsCI GGATG 1 cut(s) 187
BtsI GCAGTG 1 cut(s) 664
BtsIMutI CAGTG 2 cut(s) 614, 664
CfoI GCGC 2 cut(s) 344, 909
Cfr10I RCCGGY 4 cut(s) 806, 858, 877, 918
Cfr13I GGNCC 1 cut(s) 693
CseI GACGC 1 cut(s) 707
Csp6I GTAC 5 cut(s) 479, 553, 613, 672, 706
CspAI ACCGGT 1 cut(s) 858
CviAII CATG 9 cut(s) 238, 547, 735, 782, 800, 864, 869, 896, 910
CviQI GTAC 5 cut(s) 479, 553, 613, 672, 706
DdeI CTNAG 1 cut(s) 506
DpnI GATC 8 cut(s) 11, 30, 362, 618, 630, 714, 766, 831
DpnII GATC 8 cut(s) 9, 28, 360, 616, 628, 712, 764, 829
EaeI YGGCCR 2 cut(s) 307, 786
EagI CGGCCG 1 cut(s) 307
Eam1104I CTCTTC 2 cut(s) 222, 488
EarI CTCTTC 2 cut(s) 222, 488
EciI GGCGGA 1 cut(s) 164
EclXI CGGCCG 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 693
Eco52I CGGCCG 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 9 cut(s) 241, 550, 738, 785, 803, 867, 872, 899, 913
FaqI GGGAC 2 cut(s) 528, 764
FatI CATG 9 cut(s) 237, 546, 734, 781, 799, 863, 868, 895, 909
Fnu4HI GCNGC 6 cut(s) 295, 298, 301, 310, 700, 836
FokI GGATG 1 cut(s) 174
Fsp4HI GCNGC 6 cut(s) 295, 298, 301, 310, 700, 836
FspBI CTAG 2 cut(s) 669, 890
GlaI GCGC 2 cut(s) 343, 908
GluI GCNGC 6 cut(s) 295, 298, 301, 310, 700, 836
GsaI CCCAGC 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 3 cut(s) 309, 788, 806
HapII CCGG 9 cut(s) 13, 277, 339, 710, 807, 821, 859, 878, 919
HgaI GACGC 1 cut(s) 707
HhaI GCGC 2 cut(s) 344, 909
Hin1II CATG 9 cut(s) 241, 550, 738, 785, 803, 867, 872, 899, 913
Hin6I GCGC 2 cut(s) 342, 907
HinP1I GCGC 2 cut(s) 342, 907
HincII GTYRAC 1 cut(s) 722
HindII GTYRAC 1 cut(s) 722
HinfI GANTC 3 cut(s) 458, 634, 817
HpaII CCGG 9 cut(s) 13, 277, 339, 710, 807, 821, 859, 878, 919
HphI GGTGA 2 cut(s) 154, 848
Hpy166II GTNNAC 1 cut(s) 722
Hpy188I TCNGA 6 cut(s) 628, 633, 639, 654, 816, 829
Hpy188III TCNNGA 1 cut(s) 13
Hpy8I GTNNAC 1 cut(s) 722
Hpy99I CGWCG 2 cut(s) 776, 794
HpyAV CCTTC 3 cut(s) 139, 421, 741
HpyCH4III ACNGT 1 cut(s) 643
HpyCH4IV ACGT 1 cut(s) 604
HpyF10VI GCNNNNNNNGC 5 cut(s) 300, 306, 309, 516, 841
HpyF3I CTNAG 1 cut(s) 506
HpySE526I ACGT 1 cut(s) 604
Hsp92II CATG 9 cut(s) 241, 550, 738, 785, 803, 867, 872, 899, 913
HspAI GCGC 2 cut(s) 342, 907
Kpn2I TCCGGA 1 cut(s) 12
Kzo9I GATC 8 cut(s) 9, 28, 360, 616, 628, 712, 764, 829
LmnI GCTCC 3 cut(s) 261, 341, 849
Lsp1109I GCAGC 4 cut(s) 306, 309, 711, 847
LweI GCATC 1 cut(s) 847
MaeI CTAG 2 cut(s) 669, 890
MaeII ACGT 1 cut(s) 604
MalI GATC 8 cut(s) 11, 30, 362, 618, 630, 714, 766, 831
MboI GATC 8 cut(s) 9, 28, 360, 616, 628, 712, 764, 829
MboII GAAGA 9 cut(s) 236, 239, 322, 379, 475, 555, 884, 911, 925
MfeI CAATTG 1 cut(s) 489
MflI RGATCY 3 cut(s) 9, 712, 829
MluCI AATT 4 cut(s) 268, 423, 489, 575
MlyI GAGTC 1 cut(s) 643
MmeI TCCRAC 2 cut(s) 309, 617
MroI TCCGGA 1 cut(s) 12
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 607
MspI CCGG 9 cut(s) 13, 277, 339, 710, 807, 821, 859, 878, 919
MspR9I CCNGG 2 cut(s) 710, 822
MunI CAATTG 1 cut(s) 489
MvnI CGCG 1 cut(s) 907
MwoI GCNNNNNNNGC 5 cut(s) 300, 306, 309, 516, 841
NciI CCSGG 2 cut(s) 710, 822
NdeII GATC 8 cut(s) 9, 28, 360, 616, 628, 712, 764, 829
NlaIII CATG 9 cut(s) 241, 550, 738, 785, 803, 867, 872, 899, 913
NlaIV GGNNCC 4 cut(s) 11, 257, 729, 831
NmeAIII GCCGAG 1 cut(s) 285
NspI RCATGY 1 cut(s) 241
OliI CACNNNNGTG 1 cut(s) 607
PciI ACATGT 1 cut(s) 237
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PfeI GAWTC 2 cut(s) 458, 817
Pfl23II CGTACG 1 cut(s) 552
PinAI ACCGGT 1 cut(s) 858
PkrI GCNGC 6 cut(s) 296, 299, 302, 311, 701, 837
PleI GAGTC 1 cut(s) 642
PpsI GAGTC 1 cut(s) 642
PscI ACATGT 1 cut(s) 237
PspFI CCCAGC 1 cut(s) 38
PspLI CGTACG 1 cut(s) 552
PspN4I GGNNCC 4 cut(s) 11, 257, 729, 831
PspPI GGNCC 1 cut(s) 693
PsuI RGATCY 3 cut(s) 9, 712, 829
RsaI GTAC 5 cut(s) 480, 554, 614, 673, 707
RsaNI GTAC 5 cut(s) 479, 553, 613, 672, 706
RseI CAYNNNNRTG 1 cut(s) 607
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 6 cut(s) 295, 298, 301, 310, 700, 836
Sau3AI GATC 8 cut(s) 9, 28, 360, 616, 628, 712, 764, 829
Sau96I GGNCC 1 cut(s) 693
SchI GAGTC 1 cut(s) 643
ScrFI CCNGG 2 cut(s) 710, 822
SfaNI GCATC 1 cut(s) 847
SinI GGWCC 1 cut(s) 693
SmiMI CAYNNNNRTG 1 cut(s) 607
SpeI ACTAGT 1 cut(s) 668
Sse9I AATT 4 cut(s) 268, 423, 489, 575
SsiI CCGC 9 cut(s) 21, 175, 301, 310, 498, 569, 833, 850, 905
SspMI CTAG 2 cut(s) 669, 890
StyD4I CCNGG 2 cut(s) 708, 820
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 643
TaiI ACGT 1 cut(s) 607
TaqI TCGA 1 cut(s) 645
TaqII GACCGA 2 cut(s) 100, 104
TasI AATT 4 cut(s) 268, 423, 489, 575
TauI GCSGC 2 cut(s) 303, 312
TfiI GAWTC 2 cut(s) 458, 817
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 2 cut(s) 614, 664
TseI GCWGC 4 cut(s) 294, 297, 699, 835
TspDTI ATGAA 5 cut(s) 370, 723, 885, 912, 926
TspGWI ACGGA 1 cut(s) 313
TspRI CASTG 2 cut(s) 614, 664
VpaK11BI GGWCC 1 cut(s) 693
XapI RAATTY 2 cut(s) 423, 575
XceI RCATGY 1 cut(s) 241
XspI CTAG 2 cut(s) 669, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.