pycom17g20190

NUP50 (Nucleoporin 50 kDa)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0007109
Physical Location & Seq
Forward (+)
18348315 .. 18348530
216 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 216 bp
ATGAAGCTCACGAACATGGAGAAGAAAGGTGTAACATTTGCCTGCATGAACAGTATCGATGAAAAGAAGGATGGGCTTTCCACCTTTGCTTTGAAGTTCAAGGATGGTTCCATAGTCGAGGAATTTCGAGCTGCTGTTACAGCACATAAAGATAAAGGTAAGGCATTTACAGCTATGAAGACTCCTGAAAATTCTCCCAAGGCATCTGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000054 GO:0000056 GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0022613 GO:0030163 GO:0031267 GO:0031323 GO:0031326 GO:0031503 GO:0031935 GO:0031938 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051020 GO:0051128 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051603 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0060255 GO:0060968 GO:0065007 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902275 GO:1903047 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05166 map05166
Pfam Domains
Protein Families
NUP50 Ran_BP1

Protein Analysis

72

Amino Acids

7.79

Weight (kDa)

8.76

Isoelectric Point (pI)

24.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 122, 190
AgsI TTSAA 2 cut(s) 94, 100
AluBI AGCT 3 cut(s) 7, 131, 173
AluI AGCT 3 cut(s) 7, 131, 173
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 2 cut(s) 122, 190
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 118
BccI CCATC 2 cut(s) 65, 98
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 109
BmsI GCATC 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 185
Bsa29I ATCGAT 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 198
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 2 cut(s) 76, 109
BseXI GCAGC 1 cut(s) 118
BshVI ATCGAT 1 cut(s) 57
BspDI ATCGAT 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 43
BstF5I GGATG 2 cut(s) 76, 109
BstMWI GCNNNNNNNGC 2 cut(s) 140, 170
BstV1I GCAGC 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 185
Bsu15I ATCGAT 1 cut(s) 57
BsuTUI ATCGAT 1 cut(s) 57
BtsCI GGATG 2 cut(s) 76, 109
Cac8I GCNNGC 1 cut(s) 43
ClaI ATCGAT 1 cut(s) 57
CviAII CATG 2 cut(s) 16, 46
CviJI RGCY 4 cut(s) 7, 76, 131, 173
CviKI_1 RGCY 4 cut(s) 7, 76, 131, 173
Eco130I CCWWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 2 cut(s) 19, 49
FaiI YATR 5 cut(s) 17, 47, 113, 147, 176
FatI CATG 2 cut(s) 15, 45
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 2 cut(s) 83, 116
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
Hin1II CATG 2 cut(s) 19, 49
HinfI GANTC 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 2 cut(s) 10, 185
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 170
Hsp92II CATG 2 cut(s) 19, 49
LpnPI CCDG 2 cut(s) 55, 198
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 1 cut(s) 212
MaeIII GTNAC 2 cut(s) 31, 136
MboII GAAGA 2 cut(s) 34, 190
MluCI AATT 2 cut(s) 122, 190
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 1 cut(s) 112
MseI TTAA 1 cut(s) 214
MslI CAYNNNNRTG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 140, 170
NlaIII CATG 2 cut(s) 19, 49
NlaIV GGNNCC 1 cut(s) 109
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 1 cut(s) 214
SatI GCNGC 1 cut(s) 132
SchI GAGTC 1 cut(s) 175
SetI ASST 6 cut(s) 9, 31, 86, 133, 160, 175
SfaNI GCATC 1 cut(s) 212
SgeI CNNG 9 cut(s) 22, 28, 54, 58, 112, 130, 140, 197, 211
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 2 cut(s) 122, 190
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 53
TaqI TCGA 3 cut(s) 57, 117, 127
TasI AATT 2 cut(s) 122, 190
Tru1I TTAA 1 cut(s) 214
Tru9I TTAA 1 cut(s) 214
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 4 cut(s) 17, 62, 75, 191
XapI RAATTY 2 cut(s) 122, 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.