pycom17g21120

Signal peptidase complex catalytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012805
Physical Location & Seq
Reverse (-)
19603326 .. 19606069
2744 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 543 bp
ATGGGTTGGATCGGTGAGAGCGTAGACTCCATCAAATCCCTGCAGATTCGGCAGGTCCTCACTCAGGCCGTCAGTCTCGGTATGATTGTCACATCTGCGCTTATAATATGGAAGGCGTTAATGTGTGTTACCAGCAGTGAGTCTCCCGTTGTTGTTGTTTTGTCTGGAAGTATGGAACCTGGTTTCAAGAGGGGGGACATTTTGTTCTTGCACATGAGTAAAGAACCCATTCGTGCAGGAGAAATTGTTGTATTTAATATTGATGGCCGTGAAATTCCAATTGTCCATCGCGTCATTAAGGTTCATGAACGAAAAGATGCTGGAGAAGTTGATGTCCTAACAAAAGGAGATAACAATTATGGGGATGACAGGCTTCTTTATGCTAACGGTCAGCTGTGGCTACAACGGCATCATATCATGGGCAGAGCTGTAGGGTTTTTACCTTATGTCGGGTGGGTGACAATTATCATGACTGAAAAGCCTATTATTAAGTATATTCTAATTGGCGCGTTGGGGTTGCTTGTTATAACATCAAAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24

Protein Analysis

181

Amino Acids

19.96

Weight (kDa)

7.89

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S24 PF00717 35 - 114 6.2e-10 Peptidase S24-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52600
fragaria_vesca FvH4_6g30010 FvH4_7g29810
malus_domestica MD00G1130100.v1.1 MD17G1208500.v1.1
prunus_persica Prupe.3G083100_v2.0.a1 Prupe.3G083100_v2.0.a1
pyrus_communis pycom09g13940 pycom17g21120
rosa_chinensis RchiOBHm_Chr2g0136041
rosa_laevigata RLG00000019498
rosa_multiflora Rmu_sc0011078.1_g000006
rosa_roxburghii Rroxscaffold_2G00108630
rosa_rugosa Rorug02G0327800
rosa_samantha Rh2AG379500 Rh2BG386000 Rh2CG365400
rosa_wichuraiana Rw2G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 104, 527
Acc36I ACCTGC 1 cut(s) 43
AccI GTMKAC 1 cut(s) 24
AccII CGCG 2 cut(s) 291, 509
AclWI GGATC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 265
AcsI RAATTY 1 cut(s) 273
AfiI CCNNNNNNNGG 2 cut(s) 64, 449
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 1 cut(s) 178
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 2 cut(s) 394, 428
AluI AGCT 2 cut(s) 394, 428
Alw26I GTCTC 2 cut(s) 80, 147
AlwI GGATC 1 cut(s) 17
AoxI GGCC 2 cut(s) 66, 265
ApoI RAATTY 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 2 cut(s) 100, 509
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 26, 469
AvaII GGWCC 1 cut(s) 55
BccI CCATC 3 cut(s) 38, 257, 294
BceAI ACGGC 3 cut(s) 53, 252, 422
BciT130I CCWGG 1 cut(s) 180
BcoDI GTCTC 2 cut(s) 80, 147
BfmI CTRYAG 2 cut(s) 41, 429
BfuAI ACCTGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 2 cut(s) 307, 418
BpmI CTGGAG 1 cut(s) 342
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 449
BseBI CCWGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 2 cut(s) 64, 449
BseMII CTCAG 1 cut(s) 77
BsgI GTGCAG 1 cut(s) 255
Bsh1236I CGCG 2 cut(s) 291, 509
BshFI GGCC 2 cut(s) 68, 267
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 64, 449
BsmAI GTCTC 2 cut(s) 80, 147
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 2 cut(s) 68, 267
Bsp143I GATC 1 cut(s) 9
BspANI GGCC 2 cut(s) 68, 267
BspCNI CTCAG 1 cut(s) 76
BspFNI CGCG 2 cut(s) 291, 509
BspHI TCATGA 2 cut(s) 304, 468
BspLI GGNNCC 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 1 cut(s) 17
BssMI GATC 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 389
BstDEI CTNAG 1 cut(s) 63
BstENI CCTNNNNNAGG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 2 cut(s) 291, 509
BstHHI GCGC 2 cut(s) 100, 509
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 2 cut(s) 80, 147
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 49, 406
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 178
BstSFI CTRYAG 2 cut(s) 41, 429
BstUI CGCG 2 cut(s) 291, 509
BsuRI GGCC 2 cut(s) 68, 267
BtgZI GCGATG 1 cut(s) 272
BtsCI GGATG 1 cut(s) 370
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 142
BveI ACCTGC 1 cut(s) 43
CciI TCATGA 2 cut(s) 304, 468
CfoI GCGC 2 cut(s) 100, 509
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 280
CsiI ACCWGGT 1 cut(s) 178
CviAII CATG 4 cut(s) 214, 305, 418, 469
CviJI RGCY 7 cut(s) 68, 267, 373, 394, 400, 428, 481
CviKI_1 RGCY 7 cut(s) 68, 267, 373, 394, 400, 428, 481
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 55
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 178
FaeI CATG 4 cut(s) 217, 308, 421, 472
FaqI GGGAC 1 cut(s) 209
FatI CATG 4 cut(s) 213, 304, 417, 468
FblI GTMKAC 1 cut(s) 24
FokI GGATG 1 cut(s) 377
GlaI GCGC 2 cut(s) 99, 508
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 2 cut(s) 68, 267
HgaI GACGC 1 cut(s) 280
HhaI GCGC 2 cut(s) 100, 509
Hin1II CATG 4 cut(s) 217, 308, 421, 472
Hin6I GCGC 2 cut(s) 98, 507
HinP1I GCGC 2 cut(s) 98, 507
HinfI GANTC 3 cut(s) 26, 46, 140
HphI GGTGA 2 cut(s) 26, 469
Hpy166II GTNNAC 1 cut(s) 25
Hpy188III TCNNGA 4 cut(s) 165, 187, 305, 469
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4V TGCA 3 cut(s) 43, 211, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 406
HpyF3I CTNAG 1 cut(s) 63
Hsp92II CATG 4 cut(s) 217, 308, 421, 472
HspAI GCGC 2 cut(s) 98, 507
Kzo9I GATC 1 cut(s) 9
LweI GCATC 2 cut(s) 307, 418
MabI ACCWGGT 1 cut(s) 178
MaeIII GTNAC 3 cut(s) 88, 127, 457
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MfeI CAATTG 1 cut(s) 279
MluCI AATT 6 cut(s) 243, 273, 279, 355, 462, 501
MlyI GAGTC 2 cut(s) 20, 149
MnlI CCTC 2 cut(s) 68, 183
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 4 cut(s) 119, 255, 297, 489
MspA1I CMGCKG 1 cut(s) 394
MspR9I CCNGG 1 cut(s) 180
MunI CAATTG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 2 cut(s) 291, 509
MwoI GCNNNNNNNGC 2 cut(s) 49, 406
NdeII GATC 1 cut(s) 9
NlaIII CATG 4 cut(s) 217, 308, 421, 472
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 2 cut(s) 88, 457
PagI TCATGA 2 cut(s) 304, 468
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 46
PleI GAGTC 2 cut(s) 20, 148
PpsI GAGTC 2 cut(s) 20, 148
PpuMI RGGWCCY 1 cut(s) 55
PsiI TTATAA 2 cut(s) 104, 527
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
PstI CTGCAG 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 394
SaqAI TTAA 4 cut(s) 119, 255, 297, 489
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 2 cut(s) 20, 149
ScrFI CCNGG 1 cut(s) 180
SetI ASST 6 cut(s) 57, 181, 303, 396, 430, 445
SexAI ACCWGGT 1 cut(s) 178
SfaNI GCATC 2 cut(s) 307, 418
SfcI CTRYAG 2 cut(s) 41, 429
SinI GGWCC 1 cut(s) 55
Sse9I AATT 6 cut(s) 243, 273, 279, 355, 462, 501
SspI AATATT 1 cut(s) 259
StyD4I CCNGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 389
TasI AATT 6 cut(s) 243, 273, 279, 355, 462, 501
TfiI GAWTC 1 cut(s) 46
Tru1I TTAA 4 cut(s) 119, 255, 297, 489
Tru9I TTAA 4 cut(s) 119, 255, 297, 489
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 2 cut(s) 88, 457
Tsp45I GTSAC 2 cut(s) 88, 457
TspDTI ATGAA 2 cut(s) 293, 321
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 62
XapI RAATTY 1 cut(s) 273
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.