Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004812

Physical Location & Seq

Genomic Coordinates Forward (+)

20386951 .. 20389604

Gene Structure 2654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g21960.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGGGTCTCCCCATCCCTGCCCTGCCCCTGTTCTTATAAAGCCAATTCATCCTTCTCTCTCTCAGAGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTAATTGTTTTAGCCAGAAGGTGAGGCCACAATTGCTCGCAAATCCTAAAGAGATTTGGAATTCAAGTTGTTTCTCAATTGGGTTCCTCAGGTTGTTTCCAAATACTTCCTACAATTTGTCGTCGAATCGAATCGAATCGAGTCCAATGGCACCAAAGTCAGGGAGAGGCAAGAACAACAAGTCCAAGTCAGACAAGAAGAAGAAAGAAGAGAAGGTTCCCAGTGTTCTTGACATCACTGTCATTACCCCATACGAGACACAAGTCATTCTTAAGGGCATCTCCACTGACAAGATACTTGATGTGAGAAAATTACTGGCTGTAAATGTGGAGACATGCCATCTTACAAACTATTCCCTCTCTCATGAAGTCAAGGGGAAAAAATTGAATGAAAAGGTGGAAGTTGTTAGCCTGAAACCCTGTGTTTTGAAAATGGTTGAAGAGGACTATAGCGATGAAGCCCAAGCTGAGGCTCACGTGCGGCGATTGCTGGACCTGGTGGCCTGCACGACCCGATTCGCCAAGCCCAAACGATCCGCCACCAACCCGGACTCCAAGTCCAAGAAGAATGGCAGTAGGCCTCAGACGAGGACCTCGGGCCCTCCATCTCCGTCCGGTGCGGGAGATGGCCGTCCGACTTCACCGCATTCCGAACCGTCCTTTTCGGCGATCTCGGAGAGCCTCGGGATGGTCGCCATTCATCCGACGCCGAAGCTCTCCGACTTCTATGAGTTCTTCTCTTTCTCTCACCTCTCCCCTCCAATTCTCCATTTGAAGAGATGCAACTTGGAGGATGCACATGAGAGGCGCGATGGTGACTATTTTCAAATTCAGGTATTTTCATTGTTACTGCTAGCAATTTTATACGTATTATGCATGTGCTTCTTAAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLU_N TPR_12 eIF3_p135

Protein Analysis

333

Amino Acids

37.29

Weight (kDa)

9.36

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15290 AT1G15290
fragaria_vesca	FvH4_6g29390 FvH4_6g29390 FvH4_6g29390 FvH4_6g29390 FvH4_6g29390 FvH4_6g29390 FvH4_6g29390 FvH4_6g29390 FvH4_6g29390 FvH4_6g29390 FvH4_6g29390 FvH4_6g29390 FvH4_6g29390 FvH4_6g29390
malus_domestica	MD17G1215200.v1.1
prunus_persica	Prupe.3G090800_v2.0.a1 Prupe.3G090800_v2.0.a1 Prupe.3G090800_v2.0.a1
pyrus_communis	pycom17g21960
rosa_chinensis	RchiOBHm_Chr2g0134791
rosa_laevigata	RLG00000019422
rosa_roxburghii	Rroxscaffold_2G00109750
rosa_rugosa	Rorug02G0320100 Rorug02G0320200
rosa_samantha	Rh2AG373500 Rh2BG377700 Rh2CG356100 Rh2DG394700
rosa_wichuraiana	Rw2G030300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	38
AasI	GACNNNNNNGTC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	253
AccII	CGCG	1 cut(s)	912
AciI	CCGC	4 cut(s)	583, 639, 722, 746
AclWI	GGATC	1 cut(s)	630
AcoI	YGGCCR	1 cut(s)	730
AcsI	RAATTY	3 cut(s)	163, 930, 992
AcvI	CACGTG	1 cut(s)	580
AcyI	GRCGYC	1 cut(s)	809
AfiI	CCNNNNNNNGG	3 cut(s)	263, 571, 790
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	6 cut(s)	168, 490, 532, 542, 877, 929
AhdI	GACNNNNNGTC	1 cut(s)	658
AjnI	CCWGG	1 cut(s)	597
AjuI	GAANNNNNNNTTGG	2 cut(s)	37, 69
AloI	GAACNNNNNNTCC	2 cut(s)	269, 301
AluBI	AGCT	2 cut(s)	569, 817
AluI	AGCT	2 cut(s)	569, 817
Alw26I	GTCTC	3 cut(s)	12, 353, 428
AlwI	GGATC	1 cut(s)	630
Ama87I	CYCGRG	2 cut(s)	697, 785
AoxI	GGCC	5 cut(s)	128, 603, 680, 700, 730
ApaI	GGGCCC	1 cut(s)	704
ApoI	RAATTY	3 cut(s)	163, 930, 992
AspLEI	GCGC	1 cut(s)	912
AspS9I	GGNCC	4 cut(s)	595, 693, 700, 701
AsuC2I	CCSGG	1 cut(s)	650
AsuHPI	GGTGA	4 cut(s)	136, 735, 842, 929
AsuNHI	GCTAGC	1 cut(s)	955
AvaI	CYCGRG	2 cut(s)	697, 785
AvaII	GGWCC	2 cut(s)	595, 693
AxyI	CCTNAGG	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	704
BanI	GGYRCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	704
BbrPI	CACGTG	1 cut(s)	580
BbvCI	CCTCAGC	1 cut(s)	570
BccI	CCATC	6 cut(s)	21, 450, 715, 722, 784, 908
BceAI	ACGGC	1 cut(s)	717
BciT130I	CCWGG	1 cut(s)	599
BcnI	CCSGG	1 cut(s)	650
BcoDI	GTCTC	3 cut(s)	12, 353, 428
BfaI	CTAG	1 cut(s)	956
BfmI	CTRYAG	1 cut(s)	550
BfrI	CTTAAG	1 cut(s)	374
BisI	GCNGC	1 cut(s)	584
BlsI	GCNGC	1 cut(s)	585
Bme1390I	CCNGG	2 cut(s)	599, 650
Bme18I	GGWCC	2 cut(s)	595, 693
BmeRI	GACNNNNNGTC	1 cut(s)	658
BmeT110I	CYCGRG	2 cut(s)	697, 785
BmgT120I	GGNCC	4 cut(s)	595, 693, 700, 701
BmiI	GGNNCC	4 cut(s)	188, 255, 321, 702
BmrFI	CCNGG	2 cut(s)	599, 650
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	3 cut(s)	390, 872, 886
BmtI	GCTAGC	1 cut(s)	959
BmuI	ACTGGG	1 cut(s)	318
BoxI	GACNNNNGTC	1 cut(s)	365
BplI	GAGNNNNNCTC	2 cut(s)	824, 856
Bpu10I	CCTNAGC	1 cut(s)	570
BpuMI	CCSGG	1 cut(s)	650
BsaAI	YACGTR	2 cut(s)	580, 970
BsaHI	GRCGYC	1 cut(s)	809
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	696, 784
BsaWI	WCCGGW	1 cut(s)	716
BsaXI	ACNNNNNCTCC	2 cut(s)	638, 668
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 571, 790
Bse1I	ACTGG	2 cut(s)	324, 423
Bse21I	CCTNAGG	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	2 cut(s)	696, 784
BseGI	GGATG	5 cut(s)	13, 49, 795, 802, 901
BseLI	CCNNNNNNNGG	3 cut(s)	263, 571, 790
BseMII	CTCAG	4 cut(s)	77, 205, 561, 698
BseNI	ACTGG	2 cut(s)	324, 423
BseSI	GKGCMC	1 cut(s)	704
BsgI	GTGCAG	1 cut(s)	592
Bsh1236I	CGCG	1 cut(s)	912
BshFI	GGCC	5 cut(s)	130, 605, 682, 702, 732
BshNI	GGYRCC	1 cut(s)	253
BsiHKCI	CYCGRG	2 cut(s)	697, 785
BsiSI	CCGG	2 cut(s)	650, 717
BslI	CCNNNNNNNGG	3 cut(s)	263, 571, 790
BsmAI	GTCTC	3 cut(s)	12, 353, 428
BsmI	GAATGC	1 cut(s)	748
BsnI	GGCC	5 cut(s)	130, 605, 682, 702, 732
Bso31I	GGTCTC	1 cut(s)	12
BsoBI	CYCGRG	2 cut(s)	697, 785
Bsp120I	GGGCCC	1 cut(s)	700
Bsp1286I	GDGCHC	1 cut(s)	704
Bsp143I	GATC	2 cut(s)	635, 771
BspACI	CCGC	4 cut(s)	583, 639, 722, 746
BspANI	GGCC	5 cut(s)	130, 605, 682, 702, 732
BspCNI	CTCAG	4 cut(s)	76, 204, 562, 697
BspFNI	CGCG	1 cut(s)	912
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	4 cut(s)	188, 255, 321, 702
BspOI	GCTAGC	1 cut(s)	959
BspPI	GGATC	1 cut(s)	630
BspT107I	GGYRCC	1 cut(s)	253
BspTI	CTTAAG	1 cut(s)	374
BspTNI	GGTCTC	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	324, 423
BssECI	CCNNGG	2 cut(s)	696, 784
BssMI	GATC	2 cut(s)	635, 771
BssNI	GRCGYC	1 cut(s)	809
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	2 cut(s)	343, 759
Bst6I	CTCTTC	3 cut(s)	306, 537, 872
BstACI	GRCGYC	1 cut(s)	809
BstAFI	CTTAAG	1 cut(s)	374
BstBAI	YACGTR	2 cut(s)	580, 970
BstC8I	GCNNGC	3 cut(s)	141, 607, 957
BstDEI	CTNAG	4 cut(s)	63, 191, 570, 684
BstF5I	GGATG	5 cut(s)	13, 49, 795, 802, 901
BstFNI	CGCG	1 cut(s)	912
BstHHI	GCGC	1 cut(s)	912
BstKTI	GATC	2 cut(s)	638, 774
BstMAI	GTCTC	3 cut(s)	12, 353, 428
BstMBI	GATC	2 cut(s)	635, 771
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 589
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	2 cut(s)	441, 982
BstPAI	GACNNNNGTC	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	597, 648
BstSFI	CTRYAG	1 cut(s)	550
BstSLI	GKGCMC	1 cut(s)	704
BstSNI	TACGTA	1 cut(s)	970
BstUI	CGCG	1 cut(s)	912
Bsu36I	CCTNAGG	1 cut(s)	191
BsuRI	GGCC	5 cut(s)	130, 605, 682, 702, 732
BtgZI	GCGATG	2 cut(s)	570, 927
BtsCI	GGATG	5 cut(s)	13, 49, 795, 802, 901
BtsIMutI	CAGTG	3 cut(s)	331, 339, 387
Cac8I	GCNNGC	3 cut(s)	141, 607, 957
CciI	TCATGA	1 cut(s)	466
CfoI	GCGC	1 cut(s)	912
Cfr13I	GGNCC	4 cut(s)	595, 693, 700, 701
CseI	GACGC	1 cut(s)	817
CsiI	ACCWGGT	1 cut(s)	597
CviAII	CATG	4 cut(s)	438, 467, 902, 979
DdeI	CTNAG	4 cut(s)	63, 191, 570, 684
DpnI	GATC	2 cut(s)	637, 773
DpnII	GATC	2 cut(s)	635, 771
DrdI	GACNNNNNNGTC	1 cut(s)	341
DriI	GACNNNNNGTC	1 cut(s)	658
DseDI	GACNNNNNNGTC	1 cut(s)	341
EaeI	YGGCCR	1 cut(s)	730
Eam1104I	CTCTTC	3 cut(s)	306, 537, 872
Eam1105I	GACNNNNNGTC	1 cut(s)	658
EarI	CTCTTC	3 cut(s)	306, 537, 872
EciI	GGCGGA	1 cut(s)	628
Eco105I	TACGTA	1 cut(s)	970
Eco147I	AGGCCT	1 cut(s)	682
Eco24I	GRGCYC	1 cut(s)	704
Eco31I	GGTCTC	1 cut(s)	12
Eco47I	GGWCC	2 cut(s)	595, 693
Eco72I	CACGTG	1 cut(s)	580
Eco81I	CCTNAGG	1 cut(s)	191
Eco88I	CYCGRG	2 cut(s)	697, 785
EcoO109I	RGGNCCY	2 cut(s)	693, 701
EcoRI	GAATTC	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	597
EcoT22I	ATGCAT	1 cut(s)	980
EcoT38I	GRGCYC	1 cut(s)	704
FaeI	CATG	4 cut(s)	441, 470, 905, 982
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FatI	CATG	4 cut(s)	437, 466, 901, 978
FauI	CCCGC	1 cut(s)	715
Fnu4HI	GCNGC	1 cut(s)	584
FokI	GGATG	4 cut(s)	36, 789, 802, 908
FriOI	GRGCYC	1 cut(s)	704
Fsp4HI	GCNGC	1 cut(s)	584
FspBI	CTAG	1 cut(s)	956
GlaI	GCGC	1 cut(s)	911
GluI	GCNGC	1 cut(s)	584
HaeIII	GGCC	5 cut(s)	130, 605, 682, 702, 732
HapII	CCGG	2 cut(s)	650, 717
HgaI	GACGC	1 cut(s)	817
HhaI	GCGC	1 cut(s)	912
Hin1I	GRCGYC	1 cut(s)	809
Hin1II	CATG	4 cut(s)	441, 470, 905, 982
Hin6I	GCGC	1 cut(s)	910
HinP1I	GCGC	1 cut(s)	910
HinfI	GANTC	6 cut(s)	229, 234, 239, 244, 618, 653
HpaII	CCGG	2 cut(s)	650, 717
HphI	GGTGA	4 cut(s)	136, 735, 842, 929
Hpy188I	TCNGA	8 cut(s)	66, 295, 687, 738, 754, 778, 807, 823
Hpy188III	TCNNGA	3 cut(s)	332, 467, 787
Hpy99I	CGWCG	2 cut(s)	229, 811
HpyAV	CCTTC	3 cut(s)	63, 115, 310
HpyCH4III	ACNGT	2 cut(s)	343, 759
HpyCH4IV	ACGT	2 cut(s)	579, 969
HpyCH4V	TGCA	4 cut(s)	609, 885, 899, 978
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 589
HpyF3I	CTNAG	4 cut(s)	63, 191, 570, 684
HpySE526I	ACGT	2 cut(s)	579, 969
Hsp92I	GRCGYC	1 cut(s)	809
Hsp92II	CATG	4 cut(s)	441, 470, 905, 982
HspAI	GCGC	1 cut(s)	910
Kzo9I	GATC	2 cut(s)	635, 771
LweI	GCATC	3 cut(s)	390, 872, 886
MabI	ACCWGGT	1 cut(s)	597
MaeI	CTAG	1 cut(s)	956
MaeII	ACGT	2 cut(s)	579, 969
MaeIII	GTNAC	2 cut(s)	917, 948
MalI	GATC	2 cut(s)	637, 773
MboI	GATC	2 cut(s)	635, 771
MboII	GAAGA	7 cut(s)	313, 316, 323, 554, 679, 829, 889
MfeI	CAATTG	2 cut(s)	134, 180
MhlI	GDGCHC	1 cut(s)	704
MlyI	GAGTC	2 cut(s)	253, 647
MmeI	TCCRAC	3 cut(s)	761, 830, 846
Mph1103I	ATGCAT	1 cut(s)	980
MseI	TTAA	3 cut(s)	105, 375, 989
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	2 cut(s)	650, 717
MspR9I	CCNGG	2 cut(s)	599, 650
MunI	CAATTG	2 cut(s)	134, 180
Mva1269I	GAATGC	1 cut(s)	748
MvaI	CCWGG	1 cut(s)	599
MvnI	CGCG	1 cut(s)	912
MwoI	GCNNNNNNNGC	2 cut(s)	136, 589
NciI	CCSGG	1 cut(s)	650
NdeII	GATC	2 cut(s)	635, 771
NheI	GCTAGC	1 cut(s)	955
NlaIII	CATG	4 cut(s)	441, 470, 905, 982
NlaIV	GGNNCC	4 cut(s)	188, 255, 321, 702
NmuCI	GTSAC	1 cut(s)	917
NsiI	ATGCAT	1 cut(s)	980
NspI	RCATGY	2 cut(s)	441, 982
PagI	TCATGA	1 cut(s)	466
PceI	AGGCCT	1 cut(s)	682
PctI	GAATGC	1 cut(s)	748
PfeI	GAWTC	4 cut(s)	229, 234, 239, 618
PkrI	GCNGC	1 cut(s)	585
PleI	GAGTC	2 cut(s)	252, 647
PmaCI	CACGTG	1 cut(s)	580
PmlI	CACGTG	1 cut(s)	580
PpsI	GAGTC	2 cut(s)	252, 647
Ppu21I	YACGTR	2 cut(s)	580, 970
PpuMI	RGGWCCY	1 cut(s)	693
PshAI	GACNNNNGTC	1 cut(s)	365
PsiI	TTATAA	1 cut(s)	38
Psp5II	RGGWCCY	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	597
PspCI	CACGTG	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	4 cut(s)	188, 255, 321, 702
PspOMI	GGGCCC	1 cut(s)	700
PspPI	GGNCC	4 cut(s)	595, 693, 700, 701
PspPPI	RGGWCCY	1 cut(s)	693
SaqAI	TTAA	3 cut(s)	105, 375, 989
SatI	GCNGC	1 cut(s)	584
Sau3AI	GATC	2 cut(s)	635, 771
Sau96I	GGNCC	4 cut(s)	595, 693, 700, 701
SchI	GAGTC	2 cut(s)	253, 647
ScrFI	CCNGG	2 cut(s)	599, 650
SduI	GDGCHC	1 cut(s)	704
SexAI	ACCWGGT	1 cut(s)	597
SfaNI	GCATC	3 cut(s)	390, 872, 886
SfcI	CTRYAG	1 cut(s)	550
SinI	GGWCC	2 cut(s)	595, 693
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SnaBI	TACGTA	1 cut(s)	970
SseBI	AGGCCT	1 cut(s)	682
SsiI	CCGC	4 cut(s)	583, 639, 722, 746
SspMI	CTAG	1 cut(s)	956
StuI	AGGCCT	1 cut(s)	682
StyD4I	CCNGG	2 cut(s)	597, 648
TaaI	ACNGT	2 cut(s)	343, 759
TaiI	ACGT	2 cut(s)	582, 972
TaqI	TCGA	4 cut(s)	227, 232, 237, 242
TauI	GCSGC	1 cut(s)	586
TfiI	GAWTC	4 cut(s)	229, 234, 239, 618
Tru1I	TTAA	3 cut(s)	105, 375, 989
Tru9I	TTAA	3 cut(s)	105, 375, 989
TscAI	CASTG	3 cut(s)	331, 346, 394
TseFI	GTSAC	1 cut(s)	917
Tsp45I	GTSAC	1 cut(s)	917
TspDTI	ATGAA	6 cut(s)	38, 483, 507, 573, 791, 933
TspGWI	ACGGA	1 cut(s)	702
TspRI	CASTG	3 cut(s)	331, 346, 394
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	2 cut(s)	595, 693
XapI	RAATTY	3 cut(s)	163, 930, 992
XceI	RCATGY	2 cut(s)	441, 982
XspI	CTAG	1 cut(s)	956
Zsp2I	ATGCAT	1 cut(s)	980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.