RLG00000019422

Clustered mitochondria protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004812
Physical Location & Seq
Reverse (-)
51863296 .. 51873048
9753 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019422

Sequence Viewer

Length: 4743 bp
ATGGCCCCAAAATCAGGCAGAGGCAAAAACAACAAGGCCAAGTCTGACAAGAAGAAGAAGGAAGATAAGGTTCCTAGTGTTCTTGACATCACTGTCATTACTCCATATGACACACAAGTTATTCTTAAGGGTATCTCCACTGACAAGATACTTGATGTTAAAAGACTACTGGCTGTGAATGTAGAGACGTGTCATCTTACAAACTATTCCTTGTCTCATGAAGTGAAAGGGAAGAGACTGAATGAAAGGGTGGAGGTGGTTATTCTGAAACCTTGTCTTCTGAAAATGGTTGAAGAGGACTATAGCGACGAAGCCGAAGCTGTTGCCCACGTGCGGCGTCTGCTGGACCTGGTGGCCTGCACGACCCGATTCGCCAAGCCCAAACGGTCCGCTGCCGCCCCGGACTCCAAGTCCAAGAAGAGCGGCACCAAACCCGTCCACAAGAACTCCGGCCCATCCTCACCGTCCGTTTCGGCCATCTCGGAGAGCCTCGGGATGGTCGCCATTCACCCGACCCCCAAGCTCTCCGACTTCTACGACTTCTTCTCTTTCTCACACCTCACCCCTCCCATTCTCCATTTACGGAGGTGTGACGTGGACGACGCACAGGAGAGACGCGACGGAGACTATTTTCACATGCAGATTAAGATTTGCAATGGGAAGCAAGTACAAGTGGTTGCATCAGTAAAAGGGTTCTACACAGTGGGAAAGCAGTTTTTACAAAGCCACTCATTGGTGGATCTTCTGCAACAGCTCAGTAGAGCTTTTGCTAATGCATATGAATCCTTGATGAAAGCTTTTGTAGAGCATAACAAGTTTGGTGACCTTCCATATGGTTTTCGAGCAAACACATGGCTTGTTCCTCCATCTGTTGCCGAGTCTCCATCAAATTTTCCATCCCTGCCGACTGAAGATGAAAATTGGGGAGGAAATGGTGGAGGCCAGGGAAGAAATGGTGAATATGATCGTCGACCATGGGCTACTGACTTTGCCATTTTGGCTTGCCTGCCTTGCAAAACTGAGGAGGAGAGGGTTGTTCGAGACCGAAAAGCATTTTTGCTTCATAGTAAATTCATTGATGTATCGGTCTTTAAAGCTGCTGCCGCAATACGTGGTATAATAGATTCTACAGTGAATGGAAAGGAGACAACCAATTGTTCTCCGGGCTCTGTTCTTTATGAGGAGCGTGTTGGAGACTTGTCCATTGTTGTAAAACGTGATATAACAGATCCATTGTCAAAGTTTAGTGGTGATCATCCATGCAGTACCCGGGAAGTTGCTCAGAGGTGTTTACTCAAGGGTTTAACTTCTGATGAGAGTGTGGTTGTTCATGATACACCCTCCTTGGGTGTGGTCAATGTAAGGCACTGTGGATACATTGCAACAGTTAAAGTTGTTGGTAAAATAAAGAAGGGAAGCTGTGAGGCTAAAGATATTGACATTGAAGATCAACCAGATGGAGGAGCCAATTCTCTTAATGTGAACAGCCTGAGGGTTCTGCTTCGAATGTTCAACACTGAATCAGTGGATCACTCTAATTCAGATAGTTTAGAAACTTCTAGGTGTCTGGTTCAAAGAGTAATAAAAGAGAGCTTGACGAAGTTAGAGGATGAGCCTGCCAATTCTGAAAGGTCTATCAGATGGGAACTTGGTTCTTGCTGGTTGCAACATCTACAAAGGCAGGAAACACCAGTAAACAATTCTGATAGTCCCGAGGATGATATTGAGGCGGCTGAACCAGTTGTTAAAGGTCTAGGGAAGCAATTTAAATTTTTGAAGAAGAGGGAAAAGAAAACAAGTACTGAAGCTGGAACATATGATGAGGAAGACATTGATGGTAGTTCTTTGAGTCTAAATGGGGGATCAGATAAATTAGAGGTAAACAATGGCGTGAGCCATGAGATCAGCAATGAGGCAGAATTGAAGACTTTAATTTCAGAAGAAGCCTATTTGCGCCTGAAAGAAACTGGAACTGGTCTTCATCTAAAGTCACCAGATGAGCTTATCAAGATGGCGCACAAATATTATGATGAAGTTGCCTTGCCAAAGCTGGTAACAGACTTTGGATCACTTGAACTCTCTCCAGTTGATGGCCGTACGCTGACAGATTTCATGCATTTAAGGGGACTGAAAATGCGCTCTTTGGGTCGAGTAGTTGAACTGTCAGAGAAACTTCCTCATATACAGTCTCTTTGTATTCATGAGATGATTACTCGAGCTTTCAAGCATGTGCTTGAAGTAGTCATTGCTTCTGTTGGCAAAATAACTGACTTGTCTGCGGCAATAGCTGCAACCCTAAATTTTCTACTTGGAGGCTCTGCGATGGATGATGATGTCCTCAAATTGCAATGGCTACGAATATTCCTGGCCCGAAAATTTGGTTGGGCACTGAAAGATGAATTTCAGCACTTGAGGAAGTTATCAATTCTCCGAGGACTTTGCCATAAGGTTGGGCTGGAGTTGGCCCCAAGAGATTATGACATGGAATGCCATAATCTGTTCAGCATATACGACATTATTAGCATGGTTCCAGTGTGTAAGGCAACCATTTATCAGCAGAAGGCTTTAGCTATTAATGAAAGGGAACTTGGGCTGGACCATCCAGATACCATGAAAAGCTATGGGGATCTTTCCGTTTTTTACTACCGTCTTCAATACATCGAATTGGCTTTGAAGTATGTAAATCGTGCGTTGTTTCTTCTTCATTTTACATGTGGACTTTCTCACCCTAACACAGCTGCGACATACATAAATGTGGCTATGATGGAGGAGGGCATGGGAAATGTCCATGTTGCTCTCAGATACCTACATGAAGCTTTGAAGTGTAACCAGAGACTATTAGGAGCAGATCACATACAGACTGCTGCAAGCTATCATGCCATAGCTATAGCTCTTTCATTGATGGAAGCATATTCTCTAAGTGTGCAACATGAGCAAACAACACTTAGGATACTTCAAGACAAACTTGGACCTGAGGATCTTCGTACTCAGGATGCAGCAGCATGGCTTGAATATTTTGAATCTAAATCTCTAGAGCAGCAAGAAGCAGCACGAAATGGATCTCCAAAGCCTGATGCCTTGATTGCAAGCAAAGGTCACCTTAGTGTGTCAGATCTCCTTGATTACATTAGCCCTGATCAAGATTCAAAAGTAAATGATGCACATAGGAAGCAGCGACGTGCAAAGGTTTATCAGTCGAGTGATACCATCTATGAGGCACATCCAGATGTAATAGCTGACGATGACTTGCCAAGTGATGGCCTTGAAAACCCTATGATTTTGATAGATGATAATACTGAAGTAGTTGAGGAAAGATGGGTTCATCAGGGACTGGAGGAAAAAGATGATGTCTCTAGAAATGGTTTGTCAGTTGCAAGTGTAACCGCCGAAGAAACAACTTCAGATGAAGGATGGCAAGAAGCCAATTCAAAGGGGAGGTCTGGGAATACCACTACTGGGCGGAGGTTCAGTAGAAGGAGGCCAGACAGTGAATCTTCACACTTTAGAGAAAGCACATACTCGAGGGAAGTCAAATCCTCATCACAGACTGCAGCTGTGAAGAGCTTTCTAAATGATTCATCTTCATCAAAGCAATCAAAGGTTCGTACTGTGAGTACTGGAGAGGATTCAGTTAGACTTCAGTCCAAAACTACTGTTTCTAAAGTCTTCTCTACTCCAGCCACTCTTACCAACTTGACTTCAAAATCTGTATCTTACAAACAAGTAGCTTTGGCACCTCCAGGTACTGTTCTAAAGTCATTGCTGGATAAAGTTGACGACCTAAATGTGGAAGAATCTGAAACAAAGGAGTGTAACCCTCCACCTGAGACATTGAAAACTGAAGAAAGCATAGGTGTAGATGAACTCATTCCAAATGATGAGAACGAAGGAACACATGCAAGTTCAGCCCAGTTGGAAGAAACAGGCCCTGAAACTGTGGAAGAAAGGTCTGCAGATAAAAATGGAAGTAAGCTGTCGGCTGCAGCAGAACCATTCAATCCAAGACCACTCACCATGACTCACCCTCTAAAACCAGTTGCCGTTACAAGTGTATATGACGTGAGAGCCAGTCAAGCAATGCTTTCTGCACCTGTACTCCCCCCAGTAGCTGCCAGAGTTCCTTGTGGTCCTCGGTCACCTTTGTATTATAAAACCAATTATTCTTTTCGCTTGAGGCAAGGTGCTCAAAAATTTCGAAGACCCCTTTCAGAAAGAAGTGGATCAGGGCCTCCAAGAATCATGAATCCACATGCTCCAGAGTTCGTTCCTGGGAGAACTTTGCAAGCAGATTACATGAATGAATATGCAGAATTTCCAACTGAAGCAAATTCTTCATTTGAAATGAATAGGGCTGAAGAGATGGATGAAAAATCGAATGGTAAAGCTGAGAGAAAGAGCATCTCTGAGTCTGAGAAGTCAGAGCTTGCAAGGCAGATATTGCTGAGCTTCATAGTAAAATCTGTCCAGCACAACAAGGATTCTGAAAGTGAAAGTAAGCAGGAAAATCATTTAGATGCCATAGAGAAGGACAGTGCAATTATAAAGATTCACTATGGAAATGAAGGAAAGAAGGACGTAGTTTCTCAATCCAGTGACTGTGATCAATCAAAAACAACGGAAGTAGATACAAATGAAGTTGGTGATAGTGAAGGATTTACAGTTGTGACAAAGAGGAGAAGAAGCCGGCAGCAGTTCAGAAGTGAGTTGTACAATCAGCAATCCATCTCGGCTTCTGTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU_N TPR_12 eIF3_p135

Protein Analysis

1581

Amino Acids

175.62

Weight (kDa)

6.0

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLU_N PF15044 47 - 118 4.3e-08 Mitochondrial function, CLU-N-term
eIF3_p135 PF12807 693 - 775 3e-18 Translation initiation factor eIF3 subunit 135
TPR_12 PF13424 912 - 986 3.2e-11 Tetratricopeptide repeat
TPR_10 PF13374 912 - 952 2.8e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 4149, 4541
AasI GACNNNNNNGTC 1 cut(s) 92
AccB1I GGYRCC 2 cut(s) 425, 3733
AccB7I CCANNNNNTGG 3 cut(s) 733, 2090, 3257
AccBSI CCGCTC 1 cut(s) 423
AccI GTMKAC 1 cut(s) 970
AccII CGCG 1 cut(s) 618
AciI CCGC 9 cut(s) 334, 390, 396, 423, 1104, 1730, 2279, 3384, 3460
AclWI GGATC 9 cut(s) 747, 1223, 1536, 1870, 2074, 2634, 2985, 3067, 4228
AcoI YGGCCR 2 cut(s) 474, 2092
AcsI RAATTY 9 cut(s) 889, 1070, 1769, 2299, 2375, 2399, 4190, 4310, 4327
AcuI CTGAAG 8 cut(s) 930, 1824, 3318, 3384, 3623, 3861, 4341, 4374
AcvI CACGTG 1 cut(s) 331
AcyI GRCGYC 1 cut(s) 337
AflII CTTAAG 1 cut(s) 125
AflIII ACRYGT 2 cut(s) 188, 2711
AhdI GACNNNNNGTC 1 cut(s) 409
AjiI CACGTC 4 cut(s) 189, 595, 3179, 4060
AjnI CCWGG 5 cut(s) 348, 942, 2364, 3739, 4267
AjuI GAANNNNNNNTTGG 4 cut(s) 2365, 2397, 2571, 2603
AleI CACNNNNGTG 1 cut(s) 3102
Alw21I GWGCWC 1 cut(s) 4186
AlwI GGATC 9 cut(s) 747, 1223, 1536, 1870, 2074, 2634, 2985, 3067, 4228
AlwNI CAGNNNCTG 5 cut(s) 3331, 3746, 3929, 4109, 4596
Ama87I CYCGRG 5 cut(s) 491, 1269, 1712, 2214, 3520
ApoI RAATTY 9 cut(s) 889, 1070, 1769, 2299, 2375, 2399, 4190, 4310, 4327
ArsI GACNNNNNNTTYG 2 cut(s) 3422, 3454
AseI ATTAAT 1 cut(s) 2574
Asp700I GAANNNNTTC 1 cut(s) 3867
AspLEI GCGC 3 cut(s) 1956, 2017, 2139
AsuC2I CCSGG 4 cut(s) 401, 1164, 1270, 1271
AsuII TTCGAA 2 cut(s) 1504, 4195
AvaI CYCGRG 5 cut(s) 491, 1269, 1712, 2214, 3520
AvaII GGWCC 5 cut(s) 346, 387, 2596, 2969, 4127
AxyI CCTNAGG 2 cut(s) 1490, 2973
BaeGI GKGCMC 1 cut(s) 2389
BanI GGYRCC 2 cut(s) 425, 3733
BanII GRGCYC 1 cut(s) 1169
BbrPI CACGTG 1 cut(s) 331
BbsI GAAGAC 7 cut(s) 269, 1833, 1931, 1970, 2642, 3658, 4204
Bbv12I GWGCWC 1 cut(s) 4186
BceAI ACGGC 2 cut(s) 2079, 4025
BcgI CGANNNNNNTGC 4 cut(s) 305, 339, 2421, 2455
BciT130I CCWGG 5 cut(s) 350, 944, 2366, 3741, 4269
BciVI GTATCC 2 cut(s) 1367, 2943
BclI TGATCA 3 cut(s) 1252, 3136, 4600
BcnI CCSGG 4 cut(s) 401, 1164, 1270, 1271
BfaI CTAG 5 cut(s) 75, 1560, 1754, 3032, 3354
BfmI CTRYAG 6 cut(s) 301, 1128, 2886, 3549, 3951, 3981
BfrI CTTAAG 1 cut(s) 125
BfuI GTATCC 2 cut(s) 1367, 2943
BglI GCCNNNNNGGC 1 cut(s) 998
BglII AGATCT 1 cut(s) 3112
BlpI GCTNAGC 1 cut(s) 4442
BmcAI AGTACT 2 cut(s) 1801, 3616
Bme1390I CCNGG 9 cut(s) 350, 401, 944, 1164, 1270, 1271, 2366, 3741, 4269
Bme18I GGWCC 5 cut(s) 346, 387, 2596, 2969, 4127
BmeRI GACNNNNNGTC 1 cut(s) 409
BmeT110I CYCGRG 5 cut(s) 491, 1269, 1712, 2214, 3520
BmgBI CACGTC 4 cut(s) 189, 595, 3179, 4060
BmiI GGNNCC 7 cut(s) 6, 72, 427, 1465, 2466, 2529, 3735
BmrFI CCNGG 9 cut(s) 350, 401, 944, 1164, 1270, 1271, 2366, 3741, 4269
BmrI ACTGGG 3 cut(s) 3465, 3904, 4097
BmsI GCATC 6 cut(s) 689, 2983, 3064, 3148, 4407, 4504
BmuI ACTGGG 3 cut(s) 3465, 3904, 4097
BoxI GACNNNNGTC 1 cut(s) 3640
BpiI GAAGAC 7 cut(s) 269, 1833, 1931, 1970, 2642, 3658, 4204
BpmI CTGGAG 7 cut(s) 2067, 2477, 3353, 3639, 3660, 3723, 4239
Bpu1102I GCTNAGC 1 cut(s) 4442
Bpu14I TTCGAA 2 cut(s) 1504, 4195
BpuEI CTTGAG 3 cut(s) 1280, 2431, 4192
BpuMI CCSGG 4 cut(s) 401, 1164, 1270, 1271
BsaAI YACGTR 2 cut(s) 331, 1112
BsaHI GRCGYC 1 cut(s) 337
BsaI GGTCTC 1 cut(s) 1035
BsaXI ACNNNNNCTCC 6 cut(s) 431, 461, 3454, 3484, 4080, 4110
Bse118I RCCGGY 1 cut(s) 4683
Bse21I CCTNAGG 2 cut(s) 1490, 2973
Bse3DI GCAATG 7 cut(s) 661, 1377, 1915, 2244, 2354, 3758, 4083
BseBI CCWGG 5 cut(s) 350, 944, 2366, 3741, 4269
BseMI GCAATG 7 cut(s) 661, 1377, 1915, 2244, 2354, 3758, 4083
BseRI GAGGAG 6 cut(s) 1037, 1040, 1196, 1476, 2783, 4687
BseSI GKGCMC 1 cut(s) 2389
BsgI GTGCAG 2 cut(s) 343, 4071
Bsh1236I CGCG 1 cut(s) 618
BshNI GGYRCC 2 cut(s) 425, 3733
BsiHKAI GWGCWC 1 cut(s) 4186
BsiHKCI CYCGRG 5 cut(s) 491, 1269, 1712, 2214, 3520
BsiSI CCGG 5 cut(s) 401, 450, 1163, 1270, 4684
BsiWI CGTACG 1 cut(s) 2096
BslFI GGGAC 3 cut(s) 1695, 2139, 3342
BsmBI CGTCTC 2 cut(s) 179, 607
BsmFI GGGAC 3 cut(s) 1695, 2139, 3342
BsmI GAATGC 1 cut(s) 2492
Bso31I GGTCTC 1 cut(s) 1035
BsoBI CYCGRG 5 cut(s) 491, 1269, 1712, 2214, 3520
Bsp119I TTCGAA 2 cut(s) 1504, 4195
Bsp1286I GDGCHC 3 cut(s) 1169, 2389, 4186
Bsp1407I TGTACA 1 cut(s) 4707
Bsp1720I GCTNAGC 1 cut(s) 4442
Bsp19I CCATGG 1 cut(s) 974
BspACI CCGC 9 cut(s) 334, 390, 396, 423, 1104, 1730, 2279, 3384, 3460
BspFNI CGCG 1 cut(s) 618
BspHI TCATGA 4 cut(s) 217, 1330, 2200, 4239
BspLI GGNNCC 7 cut(s) 6, 72, 427, 1465, 2466, 2529, 3735
BspMAI CTGCAG 3 cut(s) 3553, 3955, 3985
BspPI GGATC 9 cut(s) 747, 1223, 1536, 1870, 2074, 2634, 2985, 3067, 4228
BspQI GCTCTTC 2 cut(s) 413, 3554
BspT104I TTCGAA 2 cut(s) 1504, 4195
BspT107I GGYRCC 2 cut(s) 425, 3733
BspTI CTTAAG 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 1035
BsrBI CCGCTC 1 cut(s) 423
BsrDI GCAATG 7 cut(s) 661, 1377, 1915, 2244, 2354, 3758, 4083
BsrFI RCCGGY 1 cut(s) 4683
BsrGI TGTACA 1 cut(s) 4707
BssAI RCCGGY 1 cut(s) 4683
BssNI GRCGYC 1 cut(s) 337
BssT1I CCWWGG 2 cut(s) 974, 1344
Bst2UI CCWGG 5 cut(s) 350, 944, 2366, 3741, 4269
Bst6I CTCTTC 6 cut(s) 227, 288, 413, 1775, 3554, 4350
BstACI GRCGYC 1 cut(s) 337
BstAFI CTTAAG 1 cut(s) 125
BstAPI GCANNNNNTGC 2 cut(s) 2288, 4438
BstAUI TGTACA 1 cut(s) 4707
BstBAI YACGTR 2 cut(s) 331, 1112
BstBI TTCGAA 2 cut(s) 1504, 4195
BstC8I GCNNGC 9 cut(s) 358, 1003, 1007, 1617, 2869, 3088, 4284, 4425, 4685
BstDSI CCRYGG 1 cut(s) 974
BstEII GGTNACC 3 cut(s) 821, 3095, 4134
BstFNI CGCG 1 cut(s) 618
BstHHI GCGC 3 cut(s) 1956, 2017, 2139
BstNI CCWGG 5 cut(s) 350, 944, 2366, 3741, 4269
BstNSI RCATGY 5 cut(s) 640, 2231, 2715, 3899, 4253
BstPAI GACNNNNGTC 1 cut(s) 3640
BstPI GGTNACC 3 cut(s) 821, 3095, 4134
BstSCI CCNGG 9 cut(s) 348, 399, 942, 1162, 1268, 1269, 2364, 3739, 4267
BstSFI CTRYAG 6 cut(s) 301, 1128, 2886, 3549, 3951, 3981
BstSLI GKGCMC 1 cut(s) 2389
BstUI CGCG 1 cut(s) 618
BstV2I GAAGAC 7 cut(s) 269, 1833, 1931, 1970, 2642, 3658, 4204
BstX2I RGATCY 6 cut(s) 739, 1228, 2626, 2977, 3059, 3112
BstXI CCANNNNNNTGG 1 cut(s) 2450
BstYI RGATCY 6 cut(s) 739, 1228, 2626, 2977, 3059, 3112
Bsu36I CCTNAGG 2 cut(s) 1490, 2973
BsuI GTATCC 2 cut(s) 1367, 2943
BtgI CCRYGG 1 cut(s) 974
BtgZI GCGATG 1 cut(s) 2336
BtrI CACGTC 4 cut(s) 189, 595, 3179, 4060
Cac8I GCNNGC 9 cut(s) 358, 1003, 1007, 1617, 2869, 3088, 4284, 4425, 4685
CaiI CAGNNNCTG 5 cut(s) 3331, 3746, 3929, 4109, 4596
CciI TCATGA 4 cut(s) 217, 1330, 2200, 4239
CfoI GCGC 3 cut(s) 1956, 2017, 2139
Cfr10I RCCGGY 1 cut(s) 4683
Cfr9I CCCGGG 1 cut(s) 1269
CpoI CGGWCCG 1 cut(s) 387
CseI GACGC 3 cut(s) 326, 611, 624
CsiI ACCWGGT 1 cut(s) 348
CspI CGGWCCG 1 cut(s) 387
DraI TTTAAA 2 cut(s) 1093, 1768
DrdI GACNNNNNNGTC 1 cut(s) 92
DriI GACNNNNNGTC 1 cut(s) 409
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 2 cut(s) 474, 2092
Eam1104I CTCTTC 6 cut(s) 227, 288, 413, 1775, 3554, 4350
Eam1105I GACNNNNNGTC 1 cut(s) 409
EarI CTCTTC 6 cut(s) 227, 288, 413, 1775, 3554, 4350
EciI GGCGGA 1 cut(s) 3475
Eco130I CCWWGG 2 cut(s) 974, 1344
Eco24I GRGCYC 1 cut(s) 1169
Eco31I GGTCTC 1 cut(s) 1035
Eco47I GGWCC 5 cut(s) 346, 387, 2596, 2969, 4127
Eco57I CTGAAG 8 cut(s) 930, 1824, 3318, 3384, 3623, 3861, 4341, 4374
Eco72I CACGTG 1 cut(s) 331
Eco81I CCTNAGG 2 cut(s) 1490, 2973
Eco88I CYCGRG 5 cut(s) 491, 1269, 1712, 2214, 3520
Eco91I GGTNACC 3 cut(s) 821, 3095, 4134
EcoO109I RGGNCCY 2 cut(s) 3926, 4226
EcoO65I GGTNACC 3 cut(s) 821, 3095, 4134
EcoRII CCWGG 5 cut(s) 348, 942, 2364, 3739, 4267
EcoT14I CCWWGG 2 cut(s) 974, 1344
EcoT22I ATGCAT 2 cut(s) 778, 2118
EcoT38I GRGCYC 1 cut(s) 1169
ErhI CCWWGG 2 cut(s) 974, 1344
Esp3I CGTCTC 2 cut(s) 179, 607
FalI AAGNNNNNCTT 8 cut(s) 108, 140, 2949, 2981, 3084, 3116, 4065, 4097
FaqI GGGAC 3 cut(s) 1695, 2139, 3342
FauNDI CATATG 4 cut(s) 106, 778, 832, 1816
FbaI TGATCA 3 cut(s) 1252, 3136, 4600
FblI GTMKAC 1 cut(s) 970
FriOI GRGCYC 1 cut(s) 1169
FspBI CTAG 5 cut(s) 75, 1560, 1754, 3032, 3354
GlaI GCGC 3 cut(s) 1955, 2016, 2138
GsuI CTGGAG 7 cut(s) 2067, 2477, 3353, 3639, 3660, 3723, 4239
HapII CCGG 5 cut(s) 401, 450, 1163, 1270, 4684
HgaI GACGC 3 cut(s) 326, 611, 624
HhaI GCGC 3 cut(s) 1956, 2017, 2139
Hin1I GRCGYC 1 cut(s) 337
Hin6I GCGC 3 cut(s) 1954, 2015, 2137
HinP1I GCGC 3 cut(s) 1954, 2015, 2137
HincII GTYRAC 2 cut(s) 971, 3775
HindII GTYRAC 2 cut(s) 971, 3775
HindIII AAGCTT 2 cut(s) 795, 2814
HpaII CCGG 5 cut(s) 401, 450, 1163, 1270, 4684
Hpy166II GTNNAC 9 cut(s) 439, 598, 971, 1292, 1483, 1696, 1882, 2717, 3775
Hpy8I GTNNAC 9 cut(s) 439, 598, 971, 1292, 1483, 1696, 1882, 2717, 3775
Hpy99I CGWCG 5 cut(s) 311, 605, 623, 972, 3180
HpyCH4IV ACGT 8 cut(s) 188, 330, 594, 1111, 1216, 3178, 4059, 4575
HpySE526I ACGT 8 cut(s) 188, 330, 594, 1111, 1216, 3178, 4059, 4575
Hsp92I GRCGYC 1 cut(s) 337
HspAI GCGC 3 cut(s) 1954, 2015, 2137
KroI GCCGGC 1 cut(s) 4683
KroNI GCCGGC 1 cut(s) 4685
Ksp22I TGATCA 3 cut(s) 1252, 3136, 4600
LguI GCTCTTC 2 cut(s) 413, 3554
LmnI GCTCC 4 cut(s) 1183, 1463, 2843, 4258
LweI GCATC 6 cut(s) 689, 2983, 3064, 3148, 4407, 4504
MabI ACCWGGT 1 cut(s) 348
MaeI CTAG 5 cut(s) 75, 1560, 1754, 3032, 3354
MaeII ACGT 8 cut(s) 188, 330, 594, 1111, 1216, 3178, 4059, 4575
MbiI CCGCTC 1 cut(s) 423
MfeI CAATTG 1 cut(s) 1153
MflI RGATCY 6 cut(s) 739, 1228, 2626, 2977, 3059, 3112
MhlI GDGCHC 3 cut(s) 1169, 2389, 4186
MlyI GAGTC 5 cut(s) 398, 887, 1858, 4012, 4415
MmeI TCCRAC 4 cut(s) 552, 1171, 3894, 4340
Mph1103I ATGCAT 2 cut(s) 778, 2118
MroNI GCCGGC 1 cut(s) 4683
MroXI GAANNNNTTC 1 cut(s) 3867
MslI CAYNNNNRTG 4 cut(s) 2753, 3102, 3225, 4512
MspA1I CMGCKG 3 cut(s) 392, 2738, 3554
MspCI CTTAAG 1 cut(s) 125
MspI CCGG 5 cut(s) 401, 450, 1163, 1270, 4684
MspR9I CCNGG 9 cut(s) 350, 401, 944, 1164, 1270, 1271, 2366, 3741, 4269
MunI CAATTG 1 cut(s) 1153
Mva1269I GAATGC 1 cut(s) 2492
MvaI CCWGG 5 cut(s) 350, 944, 2366, 3741, 4269
MvnI CGCG 1 cut(s) 618
NaeI GCCGGC 1 cut(s) 4685
NciI CCSGG 4 cut(s) 401, 1164, 1270, 1271
NcoI CCATGG 1 cut(s) 974
NdeI CATATG 4 cut(s) 106, 778, 832, 1816
NgoMIV GCCGGC 1 cut(s) 4683
NlaIV GGNNCC 7 cut(s) 6, 72, 427, 1465, 2466, 2529, 3735
NmeAIII GCCGAG 2 cut(s) 901, 4706
NmuCI GTSAC 7 cut(s) 590, 821, 1989, 3095, 4134, 4592, 4663
NsiI ATGCAT 2 cut(s) 778, 2118
NspI RCATGY 5 cut(s) 640, 2231, 2715, 3899, 4253
NspV TTCGAA 2 cut(s) 1504, 4195
OliI CACNNNNGTG 1 cut(s) 3102
PaeR7I CTCGAG 2 cut(s) 2214, 3520
PagI TCATGA 4 cut(s) 217, 1330, 2200, 4239
PciI ACATGT 1 cut(s) 2711
PciSI GCTCTTC 2 cut(s) 413, 3554
PctI GAATGC 1 cut(s) 2492
PdiI GCCGGC 1 cut(s) 4685
PdmI GAANNNNTTC 1 cut(s) 3867
Pfl23II CGTACG 1 cut(s) 2096
PflMI CCANNNNNTGG 3 cut(s) 733, 2090, 3257
PleI GAGTC 5 cut(s) 398, 886, 1857, 4012, 4414
PmaCI CACGTG 1 cut(s) 331
PmlI CACGTG 1 cut(s) 331
PpsI GAGTC 5 cut(s) 398, 886, 1857, 4012, 4414
Ppu21I YACGTR 2 cut(s) 331, 1112
PscI ACATGT 1 cut(s) 2711
PshAI GACNNNNGTC 1 cut(s) 3640
PshBI ATTAAT 1 cut(s) 2574
PsiI TTATAA 2 cut(s) 4149, 4541
Psp6I CCWGG 5 cut(s) 348, 942, 2364, 3739, 4267
PspCI CACGTG 1 cut(s) 331
PspEI GGTNACC 3 cut(s) 821, 3095, 4134
PspGI CCWGG 5 cut(s) 348, 942, 2364, 3739, 4267
PspLI CGTACG 1 cut(s) 2096
PspN4I GGNNCC 7 cut(s) 6, 72, 427, 1465, 2466, 2529, 3735
PspXI VCTCGAGB 2 cut(s) 2214, 3520
PstI CTGCAG 3 cut(s) 3553, 3955, 3985
PstNI CAGNNNCTG 5 cut(s) 3331, 3746, 3929, 4109, 4596
PsuI RGATCY 6 cut(s) 739, 1228, 2626, 2977, 3059, 3112
PvuII CAGCTG 2 cut(s) 2738, 3554
RseI CAYNNNNRTG 4 cut(s) 2753, 3102, 3225, 4512
Rsr2I CGGWCCG 1 cut(s) 387
RsrII CGGWCCG 1 cut(s) 387
SalI GTCGAC 1 cut(s) 969
SapI GCTCTTC 2 cut(s) 413, 3554
ScaI AGTACT 2 cut(s) 1801, 3616
SchI GAGTC 5 cut(s) 398, 887, 1858, 4012, 4415
ScrFI CCNGG 9 cut(s) 350, 401, 944, 1164, 1270, 1271, 2366, 3741, 4269
SduI GDGCHC 3 cut(s) 1169, 2389, 4186
SexAI ACCWGGT 1 cut(s) 348
SfaNI GCATC 6 cut(s) 689, 2983, 3064, 3148, 4407, 4504
SfcI CTRYAG 6 cut(s) 301, 1128, 2886, 3549, 3951, 3981
Sfr274I CTCGAG 2 cut(s) 2214, 3520
SfuI TTCGAA 2 cut(s) 1504, 4195
SinI GGWCC 5 cut(s) 346, 387, 2596, 2969, 4127
SlaI CTCGAG 2 cut(s) 2214, 3520
SmaI CCCGGG 1 cut(s) 1271
SmiI ATTTAAAT 1 cut(s) 1768
SmiMI CAYNNNNRTG 4 cut(s) 2753, 3102, 3225, 4512
SmlI CTYRAG 6 cut(s) 125, 1295, 2214, 2410, 3520, 4171
SmoI CTYRAG 6 cut(s) 125, 1295, 2214, 2410, 3520, 4171
SsiI CCGC 9 cut(s) 334, 390, 396, 423, 1104, 1730, 2279, 3384, 3460
SspI AATATT 3 cut(s) 2024, 2361, 3014
SspMI CTAG 5 cut(s) 75, 1560, 1754, 3032, 3354
StyD4I CCNGG 9 cut(s) 348, 399, 942, 1162, 1268, 1269, 2364, 3739, 4267
StyI CCWWGG 2 cut(s) 974, 1344
SwaI ATTTAAAT 1 cut(s) 1768
TaiI ACGT 8 cut(s) 191, 333, 597, 1114, 1219, 3181, 4062, 4578
TaqII GACCGA 3 cut(s) 1059, 1075, 4122
TatI WGTACW 5 cut(s) 667, 1799, 3614, 4093, 4707
TauI GCSGC 6 cut(s) 337, 398, 426, 1106, 1733, 2282
TseFI GTSAC 7 cut(s) 590, 821, 1989, 3095, 4134, 4592, 4663
Tsp45I GTSAC 7 cut(s) 590, 821, 1989, 3095, 4134, 4592, 4663
TspGWI ACGGA 5 cut(s) 457, 598, 636, 2623, 4631
TspMI CCCGGG 1 cut(s) 1269
Van91I CCANNNNNTGG 3 cut(s) 733, 2090, 3257
Vha464I CTTAAG 1 cut(s) 125
VpaK11BI GGWCC 5 cut(s) 346, 387, 2596, 2969, 4127
VspI ATTAAT 1 cut(s) 2574
XapI RAATTY 9 cut(s) 889, 1070, 1769, 2299, 2375, 2399, 4190, 4310, 4327
XbaI TCTAGA 2 cut(s) 3031, 3353
XceI RCATGY 5 cut(s) 640, 2231, 2715, 3899, 4253
XcmI CCANNNNNNNNNTGG 1 cut(s) 950
XhoI CTCGAG 2 cut(s) 2214, 3520
XmaI CCCGGG 1 cut(s) 1269
XmiI GTMKAC 1 cut(s) 970
XmnI GAANNNNTTC 1 cut(s) 3867
XspI CTAG 5 cut(s) 75, 1560, 1754, 3032, 3354
ZrmI AGTACT 2 cut(s) 1801, 3616
Zsp2I ATGCAT 2 cut(s) 778, 2118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.