Rh2BG377700

Clustered mitochondria protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004812
Physical Location & Seq
Reverse (-)
53387348 .. 53397483
10136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG377700.1

Sequence Viewer

Length: 4449 bp
ATGGTCGCCATTCACCCGACCCCCAAGCTCTCCGACTTCTACGACTTCTTCTCTTTCTCACACCTCACCCCTCCCATTCTCCATTTACGGAGGTGTGACGTGGACGACGCACAGGAGAGGCGCGACGGTGACTATTTTCACATGCAGATTAAGATTTGCAATGGGAAGCAAGTACAAGTGGTTGCATCAGTAAAAGGGTTCCACACAGTGGGAAAGCAGTTTTTACAAAGCCACTCATTGGTGGATCTTCTGCAACAGCTCAGTAGAGCTTTTGCTAATGCATATGAATCCTTGATGAAAGCTTTTGTAGAGCATAACAAGTTTGGTGACCTTCCATATGGTTTTCGAGCAAACACATGGCTTGTTCCTCCATCTGTTGCCGAGTCTCCATCAAATTTTCCATCTCTGCCGACTGAAGATGAAAATTGGGGAGGAAATGGTGGAGGCCAGGGAAGAAATGGTGAATATGATCGTCGACCATGGGCTACTGACTTTGCAATTTTGGCTTGCCTGCCTTGCAAAACTGAGGAGGAGAGGGTTGTTCGAGACCGAAAAGCATTTTTGCTTCATAGTAAGTTCATTGACGTATCGGTCTTTAAAGCTGCTGCTGCAATACGTGGTATAATAAATTCTACTGTGAATGGCAAGGAGACAACCAATTGTTCTCCGGGCTCTGTTCTTTATGAGGAGCGTGTTGGAGACTTGTCCATTGTTGTAAAACATGATATAACAGATCCATTGTCAAAGTCCGAAGTAATAGTTAGTGGTGATCATCCATGCAGTACCCGGGAAATTGCTCAGAGGTGTTTACTCAAGGGTTTAACTTCTGATGAGAGTGTGGTTGTTCATGATACACCCTCCTTGGGTGTGGTCAATGTAAGGCACTGTGGATACATTGCAACGGTTAAAGTTGTTGGTAAAATAAAGAAGGGAAGCTGTGAGGCTAAAGATATTGACATTGAAGATCAACCAGATGGAGGAGCCAATTCTCTTAATGTGAACAGCCTGAGGGTTCTGCTTCAAAAGTTCAACACTGAATCAGTGGATCACTCTAATTCAGATAGTTTAGAAACTTCTAGGTGTCTGGTTCAAAGAGTATTAAAAGAGAGCTTGGCCAAGTTAGAGGATGAGCCTGCCAATTCTGAGGGGTCTATCAGATGGGAACTTGGTTCTTGCTGGTTGCAACATCTACAAAAGCAGGAAACACCAGTAAACAATTCTGATAGTCCTGAGGATGATATTGAGGCGGCTGAACCAGTTGTTAAAGGTCTAGGGAAGCAATTTAAATTTTTGAAGAAGAGGGAAAAGAAAACAAGTACTGAAGCTGGAACATATGATGAGGAAGACATTGATGCTTATTCTTTGAGTCTAAATGGGGGATCAGATAAATTAGAGGTAAACAATGGCGAGAGTAATGAGATCAGCAATGAGGCAGAATTGAAGACTTTAATTTCAGAAGAAGCCTATTTGCGCCTGAAAGAAGCTGGAACTGGTCTTCATCTAAAGTCAGCAGATGAGCTTATCAAGATGGCGCACAAATATTATGATGAAGTTGCCTTGCCAAAGCTGGTAACAGACTTTGGATCACTTGAACTCTCTCCAGTTGATGGCCGTACGCTGACAGATTTCATGCATTTAAGGGGGCTGAAAATGCGCTCTTTGGGTCGAGTGGTTGAGCTTTCGGAGAAACTTCCTCATATACAGTCTCTTTGTATTCATGAGATGATTACTCGAGCTTTCAAGCATGTGCTTGAAGCAGTCATTGCTTCTGTTGGCAAAATAACTGACTTGTCTGCGGCAATAGCTGCAACCCTAAATTTTCTACTTGGAGGCTCTGCAATGGATGATGATGTCCTCAAATTGCAATGGCTACGAATATTCCTGGCCCGAAAATTTGGTTGGGCACTGAAAGATGAATTTCAGCACTTGAGGAAGTTATCAATTCTCCGAGGACTTTGCCATAAGGTTGGGCTGGAGTTGGCCCCAAGAGATTATGACATGGAATGCCATAATCCTTTCAGCATATACGACATTATTAGCATGGTTCCAGTGTGTAAGCATGTAGCATGTTCTTCAGCTGATGGACGAAATTTGTTGGAGTCATCTAAAATTGCTCTTGATAAAGGAAAGTTAGAGGATGCTGTACATTTCGGAACAAAGGCACTAACAAAGATGATAGCTGTCTGTGGCCCCTATCATCGAGTTACTGCAAGTGCTTATAGCCTTTTAGCAGTAGTCCTTTACCACACGGGTGACTTTAATCAGGCAACCATTTATCAGCAGAAGGCTTTAGCTATTAATGAAAGGGAACTTGGGCTGGACCATCCAGATACCATGAAAAGCTATGGGGATCTTTCCGTTTTTTACTACCGTCTTCAATACATCGAATTGGCTTTGAAGTATGTAAATCGTGCGTTGTTTCTTCTTCATTTTACATGTGGACTATCTCACCCTAACACAGCTGCGACATACATAAATGTGGCTATGATGGAGGAGGGCATGGGAAATGTCCATGTTGCTCTCAGATACCTACATGAAGCTTTAAAGTGTAACCAGAGACTATTAGGAGCAGATCACATACAGACTGCTGCAAGCTATCATGCCATAGCCATAGCTCTTTCATTGATGGAAGCATATTCTCTAAGTGTGCAACATGAGCAAACAACACTTAGGATACTTCAAGACAAACTTGGACCTGAGGATCTTCGTACTCAGGATGCAGCAGCATGGCTTGAATATTTTGAATCTAAATCTCTAGAGCAGCAAGAAGCAGCACGAAATGGATCTCCAAAGCCTGATGCCTTGATTGCAAGCAAAGGTCACCTTAGTGTGTCAGATCTCCTTGACTACATTAGCCCTGATCAAGATTCAAAAGTAAATGATGCACATCGGAAGCAGCGACGTGCAAAGGTTTATCAGTCTAGTGATACCATCTATGAGGCACATCAAGATGTAATAGCTGACGATGACTTGCCAAGTGATGGCCTTGAAAACCCTATGATTTTGATAGATAATAATACTGAAGTGGTTGAGGAAAGATGGGTTCATCATGGACTGGAGGAAAAAGATGATGTCTCTAGAAATGGTTTGTCAGTTGCAAGTGTAACTGCCGAAGAAACAACTTCAGATGAAGGATGGCAAGAAGCCAATTCAAAGGGGAGGTCTGGGAATACCGCTACTGGGCGGAGGTTCAGTAGAAAGAGGCCAGACAGTGAATCCAAATACTCGAGGGAAGTCAAATCCTCATCACAGACTGCAGCTGTGAAGAGCTTTCTAAATGATTCATCTTCATCAAAGCAATCAAAGGTTCGTACTGTGAGTACTGGAGAGGATTCAGTTAGACTCCAGTCCAAAACTACTGTTTCTAAAGTCTTCTCTACTCCAGCCACTCTTACGAACTTGACTTCAAAATCTGTATCTTACAAACAAGTAGCTTTGGCACCTCCAGGTACTGTTCTAAAGTCATTGCTGGATAAAGTTGACGACCTAAATGTGGAAGAATCTGAAACAAAGGAGTGTAACCCCCCACCTGAGACATTGAAAACTGAAGAAAGCATAGGTGTAGTTGAACTCATTCCAAATGATGAGAACGAAGGAACACATGCAAGTTCAACCCAGTTGGATGAAACAGGCCCTGAAACTCTGGAAGAAAGGTCTGCAGAGAAAAATGGAAGTAAGCTGTCAGCTGCAGCAGAACCATTCAATCCAAGACCACTCACCATGACTCACCCTCTGAATCCAGTTGCTGTTACAAGTGTTTATGACGTGAGAGCCAGTCAAGCAATGCTTTCTGCGCCTGTGCTCCCCCCAGTAGCTGCCAGAGTTCCTTGTGGTCCTCGGTCACCTTTGTATTATAAAACCAATTATTCTTTTCGCTTGAGGCAAGGTGTTCAAAAATTTCGAAGTCCCCTTTCAGAAAGAAGTGGATCAGGGCCTCCAAAAATCATGAATCCACATGCTCCAGAGTTTGTTCCTGGGAGAACTTTGCAAGCAGATTACATGAATGAATATGCAGAATTTCCAACTGAAGCAAATTCCTCATTTGAAATGAATAGGGCTGAAGAGACGGATGAAAAATCGAGTGGTAAAGCTGAGAGAAAGAGCATCTCTGAGTCTGAGAAGTCAGAGCTTGCCAGGCAGATATTGCTGAGCTTCATAGTAAAATCTGTCCAGCACAACAAGGATTCTGAAAGTGAAAGTAAGCAGGAAAATAATTTAGATGCCGTAGAGAAGGACAGTGCAGTTATAAAGATTCACTATGGAAATGAAGGAAAGAAGGACTTAGTTTCTCAATCCAGTGACTGTGATCAATCAAAAACAACAGATGTAGATACAAATGAAGTTGGTGATAGTGAAGGATTTACAATTGTGACAAAGAGGAGAAGAAGCCGGCAGCAGTTCAGAAGTGAGTTGTACAATCAGCAATCCATCTCGGCTTCTGTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU_N TPR_12 eIF3_p135

Protein Analysis

1482

Amino Acids

164.27

Weight (kDa)

5.69

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF3_p135 PF12807 532 - 614 1.3e-18 Translation initiation factor eIF3 subunit 135
TPR_12 PF13424 705 - 767 5e-08 Tetratricopeptide repeat
TPR_NPHP3 PF24885 707 - 806 2e-06 Nephrocystin-3 TPR domain
TPR_12 PF13424 736 - 806 6e-11 Tetratricopeptide repeat
TPR_10 PF13374 736 - 777 2.2e-10 Tetratricopeptide repeat
TPR_12 PF13424 820 - 894 2.9e-11 Tetratricopeptide repeat
TPR_10 PF13374 820 - 860 2.6e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 3855, 4247
AasI GACNNNNNNGTC 1 cut(s) 590
AccB1I GGYRCC 1 cut(s) 3439
AccB7I CCANNNNNTGG 4 cut(s) 208, 238, 1607, 2981
AccI GTMKAC 1 cut(s) 475
AccII CGCG 1 cut(s) 123
AciI CCGC 4 cut(s) 1247, 1796, 3174, 3184
AclWI GGATC 9 cut(s) 252, 728, 1053, 1387, 1591, 2358, 2709, 2791, 3934
AcoI YGGCCR 2 cut(s) 1113, 1609
AcuI CTGAAG 8 cut(s) 435, 1341, 2058, 3042, 3108, 3567, 4047, 4080
AdeI CACNNNGTG 1 cut(s) 208
AfiI CCNNNNNNNGG 8 cut(s) 208, 238, 863, 977, 1607, 2981, 3180, 3493
AflIII ACRYGT 1 cut(s) 2435
AjiI CACGTC 3 cut(s) 100, 2903, 3766
AjnI CCWGG 5 cut(s) 447, 1881, 3445, 3973, 4133
AjuI GAANNNNNNNTTGG 4 cut(s) 1882, 1914, 2295, 2327
AleI CACNNNNGTG 2 cut(s) 2250, 2826
Alw21I GWGCWC 1 cut(s) 3804
Alw26I GTCTC 9 cut(s) 390, 540, 644, 693, 1710, 2551, 3079, 3527, 4058
AlwI GGATC 9 cut(s) 252, 728, 1053, 1387, 1591, 2358, 2709, 2791, 3934
AlwNI CAGNNNCTG 5 cut(s) 3452, 3635, 3746, 3815, 4302
Ama87I CYCGRG 3 cut(s) 786, 1731, 3226
ArsI GACNNNNNNTTYG 2 cut(s) 3146, 3178
AseI ATTAAT 1 cut(s) 2298
Asp700I GAANNNNTTC 1 cut(s) 3573
AspLEI GCGC 5 cut(s) 123, 1473, 1534, 1656, 3796
AspS9I GGNCC 8 cut(s) 1885, 1981, 2189, 2320, 2693, 3632, 3833, 3932
AsuC2I CCSGG 3 cut(s) 669, 787, 788
AsuII TTCGAA 1 cut(s) 3901
AvaI CYCGRG 3 cut(s) 786, 1731, 3226
AvaII GGWCC 3 cut(s) 2320, 2693, 3833
AxyI CCTNAGG 3 cut(s) 1007, 1230, 2697
BaeGI GKGCMC 1 cut(s) 1906
BalI TGGCCA 1 cut(s) 1115
BanI GGYRCC 1 cut(s) 3439
BanII GRGCYC 1 cut(s) 674
BbsI GAAGAC 5 cut(s) 1350, 1448, 1487, 2366, 3364
Bbv12I GWGCWC 1 cut(s) 3804
BceAI ACGGC 2 cut(s) 1596, 4208
BcgI CGANNNNNNTGC 2 cut(s) 1938, 1972
BciT130I CCWGG 5 cut(s) 449, 1883, 3447, 3975, 4135
BciVI GTATCC 2 cut(s) 884, 2667
BclI TGATCA 3 cut(s) 769, 2860, 4306
BcnI CCSGG 3 cut(s) 669, 787, 788
BcoDI GTCTC 9 cut(s) 390, 540, 644, 693, 1710, 2551, 3079, 3527, 4058
BfaI CTAG 5 cut(s) 1077, 1271, 2756, 2922, 3078
BfmI CTRYAG 3 cut(s) 3255, 3657, 3687
BfuI GTATCC 2 cut(s) 884, 2667
BglII AGATCT 1 cut(s) 2836
BlpI GCTNAGC 1 cut(s) 4148
BmcAI AGTACT 2 cut(s) 1318, 3322
Bme1390I CCNGG 8 cut(s) 449, 669, 787, 788, 1883, 3447, 3975, 4135
Bme18I GGWCC 3 cut(s) 2320, 2693, 3833
BmeT110I CYCGRG 3 cut(s) 786, 1731, 3226
BmgBI CACGTC 3 cut(s) 100, 2903, 3766
BmgT120I GGNCC 8 cut(s) 1885, 1981, 2189, 2320, 2693, 3632, 3833, 3932
BmiI GGNNCC 6 cut(s) 200, 982, 1983, 2046, 2191, 3441
BmrFI CCNGG 8 cut(s) 449, 669, 787, 788, 1883, 3447, 3975, 4135
BmrI ACTGGG 3 cut(s) 3189, 3610, 3803
BmsI GCATC 8 cut(s) 194, 1342, 2128, 2707, 2788, 2872, 4113, 4210
BmuI ACTGGG 3 cut(s) 3189, 3610, 3803
BoxI GACNNNNGTC 1 cut(s) 3346
BpiI GAAGAC 5 cut(s) 1350, 1448, 1487, 2366, 3364
BpmI CTGGAG 8 cut(s) 1584, 1994, 3077, 3329, 3345, 3366, 3429, 3945
Bpu1102I GCTNAGC 1 cut(s) 4148
Bpu14I TTCGAA 1 cut(s) 3901
BpuEI CTTGAG 3 cut(s) 797, 1948, 3898
BpuMI CCSGG 3 cut(s) 669, 787, 788
BsaAI YACGTR 1 cut(s) 617
BsaBI GATNNNNATC 1 cut(s) 2886
BsaI GGTCTC 1 cut(s) 540
BsaJI CCNNGG 7 cut(s) 448, 479, 786, 861, 1948, 3836, 3974
BsaXI ACNNNNNCTCC 2 cut(s) 3178, 3208
Bsc4I CCNNNNNNNGG 8 cut(s) 208, 238, 863, 977, 1607, 2981, 3180, 3493
Bse118I RCCGGY 1 cut(s) 4389
Bse21I CCTNAGG 3 cut(s) 1007, 1230, 2697
Bse3DI GCAATG 8 cut(s) 166, 894, 1432, 1761, 1845, 1871, 3464, 3789
Bse8I GATNNNNATC 1 cut(s) 2886
BseBI CCWGG 5 cut(s) 449, 1883, 3447, 3975, 4135
BseDI CCNNGG 7 cut(s) 448, 479, 786, 861, 1948, 3836, 3974
BseJI GATNNNNATC 1 cut(s) 2886
BseLI CCNNNNNNNGG 8 cut(s) 208, 238, 863, 977, 1607, 2981, 3180, 3493
BseMI GCAATG 8 cut(s) 166, 894, 1432, 1761, 1845, 1871, 3464, 3789
BseRI GAGGAG 6 cut(s) 542, 545, 701, 993, 2507, 4393
BseSI GKGCMC 1 cut(s) 1906
BsgI GTGCAG 1 cut(s) 4260
Bsh1236I CGCG 1 cut(s) 123
BshNI GGYRCC 1 cut(s) 3439
BsiHKAI GWGCWC 1 cut(s) 3804
BsiHKCI CYCGRG 3 cut(s) 786, 1731, 3226
BsiSI CCGG 3 cut(s) 668, 787, 4390
BsiWI CGTACG 1 cut(s) 1613
BslFI GGGAC 1 cut(s) 3891
BslI CCNNNNNNNGG 8 cut(s) 208, 238, 863, 977, 1607, 2981, 3180, 3493
BsmAI GTCTC 9 cut(s) 390, 540, 644, 693, 1710, 2551, 3079, 3527, 4058
BsmBI CGTCTC 1 cut(s) 4058
BsmFI GGGAC 1 cut(s) 3891
BsmI GAATGC 1 cut(s) 2009
Bso31I GGTCTC 1 cut(s) 540
BsoBI CYCGRG 3 cut(s) 786, 1731, 3226
Bsp119I TTCGAA 1 cut(s) 3901
Bsp1286I GDGCHC 3 cut(s) 674, 1906, 3804
Bsp1407I TGTACA 2 cut(s) 2143, 4413
Bsp1720I GCTNAGC 1 cut(s) 4148
Bsp19I CCATGG 1 cut(s) 479
BspACI CCGC 4 cut(s) 1247, 1796, 3174, 3184
BspFNI CGCG 1 cut(s) 123
BspHI TCATGA 3 cut(s) 847, 1717, 3945
BspLI GGNNCC 6 cut(s) 200, 982, 1983, 2046, 2191, 3441
BspMAI CTGCAG 3 cut(s) 3259, 3661, 3691
BspPI GGATC 9 cut(s) 252, 728, 1053, 1387, 1591, 2358, 2709, 2791, 3934
BspQI GCTCTTC 1 cut(s) 3260
BspT104I TTCGAA 1 cut(s) 3901
BspT107I GGYRCC 1 cut(s) 3439
BspTNI GGTCTC 1 cut(s) 540
BsrDI GCAATG 8 cut(s) 166, 894, 1432, 1761, 1845, 1871, 3464, 3789
BsrFI RCCGGY 1 cut(s) 4389
BsrGI TGTACA 2 cut(s) 2143, 4413
BssAI RCCGGY 1 cut(s) 4389
BssECI CCNNGG 7 cut(s) 448, 479, 786, 861, 1948, 3836, 3974
BssT1I CCWWGG 2 cut(s) 479, 861
Bst2UI CCWGG 5 cut(s) 449, 1883, 3447, 3975, 4135
Bst6I CTCTTC 3 cut(s) 1292, 3260, 4056
BstAPI GCANNNNNTGC 3 cut(s) 1763, 1805, 4144
BstAUI TGTACA 2 cut(s) 2143, 4413
BstBAI YACGTR 1 cut(s) 617
BstBI TTCGAA 1 cut(s) 3901
BstC8I GCNNGC 8 cut(s) 508, 512, 1134, 2593, 2812, 3990, 4131, 4391
BstDSI CCRYGG 1 cut(s) 479
BstEII GGTNACC 3 cut(s) 326, 2819, 3840
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 5 cut(s) 123, 1473, 1534, 1656, 3796
BstMAI GTCTC 9 cut(s) 390, 540, 644, 693, 1710, 2551, 3079, 3527, 4058
BstNI CCWGG 5 cut(s) 449, 1883, 3447, 3975, 4135
BstNSI RCATGY 7 cut(s) 145, 1748, 2063, 2070, 2439, 3605, 3959
BstPAI GACNNNNGTC 1 cut(s) 3346
BstPI GGTNACC 3 cut(s) 326, 2819, 3840
BstSCI CCNGG 8 cut(s) 447, 667, 785, 786, 1881, 3445, 3973, 4133
BstSFI CTRYAG 3 cut(s) 3255, 3657, 3687
BstSLI GKGCMC 1 cut(s) 1906
BstUI CGCG 1 cut(s) 123
BstV2I GAAGAC 5 cut(s) 1350, 1448, 1487, 2366, 3364
BstX2I RGATCY 6 cut(s) 244, 733, 2350, 2701, 2783, 2836
BstXI CCANNNNNNTGG 1 cut(s) 1967
BstYI RGATCY 6 cut(s) 244, 733, 2350, 2701, 2783, 2836
Bsu36I CCTNAGG 3 cut(s) 1007, 1230, 2697
BsuI GTATCC 2 cut(s) 884, 2667
BtgI CCRYGG 1 cut(s) 479
BtrI CACGTC 3 cut(s) 100, 2903, 3766
BtsIMutI CAGTG 9 cut(s) 213, 883, 1032, 1047, 1904, 2055, 3217, 4243, 4303
Cac8I GCNNGC 8 cut(s) 508, 512, 1134, 2593, 2812, 3990, 4131, 4391
CaiI CAGNNNCTG 5 cut(s) 3452, 3635, 3746, 3815, 4302
CciI TCATGA 3 cut(s) 847, 1717, 3945
CfoI GCGC 5 cut(s) 123, 1473, 1534, 1656, 3796
Cfr10I RCCGGY 1 cut(s) 4389
Cfr13I GGNCC 8 cut(s) 1885, 1981, 2189, 2320, 2693, 3632, 3833, 3932
Cfr9I CCCGGG 1 cut(s) 786
CseI GACGC 1 cut(s) 116
DraI TTTAAA 3 cut(s) 598, 1285, 2544
DraIII CACNNNGTG 1 cut(s) 208
DrdI GACNNNNNNGTC 1 cut(s) 590
DseDI GACNNNNNNGTC 1 cut(s) 590
EaeI YGGCCR 2 cut(s) 1113, 1609
Eam1104I CTCTTC 3 cut(s) 1292, 3260, 4056
EarI CTCTTC 3 cut(s) 1292, 3260, 4056
EciI GGCGGA 1 cut(s) 3199
Eco130I CCWWGG 2 cut(s) 479, 861
Eco24I GRGCYC 1 cut(s) 674
Eco31I GGTCTC 1 cut(s) 540
Eco47I GGWCC 3 cut(s) 2320, 2693, 3833
Eco57I CTGAAG 8 cut(s) 435, 1341, 2058, 3042, 3108, 3567, 4047, 4080
Eco81I CCTNAGG 3 cut(s) 1007, 1230, 2697
Eco88I CYCGRG 3 cut(s) 786, 1731, 3226
Eco91I GGTNACC 3 cut(s) 326, 2819, 3840
EcoO109I RGGNCCY 2 cut(s) 3632, 3932
EcoO65I GGTNACC 3 cut(s) 326, 2819, 3840
EcoRII CCWGG 5 cut(s) 447, 1881, 3445, 3973, 4133
EcoT14I CCWWGG 2 cut(s) 479, 861
EcoT22I ATGCAT 2 cut(s) 283, 1635
EcoT38I GRGCYC 1 cut(s) 674
ErhI CCWWGG 2 cut(s) 479, 861
Esp3I CGTCTC 1 cut(s) 4058
FalI AAGNNNNNCTT 8 cut(s) 2673, 2705, 2808, 2840, 3771, 3803, 4265, 4297
FaqI GGGAC 1 cut(s) 3891
FauNDI CATATG 3 cut(s) 283, 337, 1333
FbaI TGATCA 3 cut(s) 769, 2860, 4306
FblI GTMKAC 1 cut(s) 475
FriOI GRGCYC 1 cut(s) 674
FspBI CTAG 5 cut(s) 1077, 1271, 2756, 2922, 3078
GlaI GCGC 5 cut(s) 122, 1472, 1533, 1655, 3795
GsuI CTGGAG 8 cut(s) 1584, 1994, 3077, 3329, 3345, 3366, 3429, 3945
HapII CCGG 3 cut(s) 668, 787, 4390
HgaI GACGC 1 cut(s) 116
HhaI GCGC 5 cut(s) 123, 1473, 1534, 1656, 3796
Hin6I GCGC 5 cut(s) 121, 1471, 1532, 1654, 3794
HinP1I GCGC 5 cut(s) 121, 1471, 1532, 1654, 3794
HincII GTYRAC 2 cut(s) 476, 3481
HindII GTYRAC 2 cut(s) 476, 3481
HindIII AAGCTT 2 cut(s) 300, 2538
HpaII CCGG 3 cut(s) 668, 787, 4390
Hpy166II GTNNAC 8 cut(s) 103, 476, 809, 1000, 1213, 1399, 2441, 3481
Hpy8I GTNNAC 8 cut(s) 103, 476, 809, 1000, 1213, 1399, 2441, 3481
Hpy99I CGWCG 4 cut(s) 110, 128, 477, 2904
HpyAV CCTTC 9 cut(s) 341, 922, 2278, 3125, 3587, 4225, 4262, 4270, 4349
HpyCH4IV ACGT 5 cut(s) 99, 585, 616, 2902, 3765
HpySE526I ACGT 5 cut(s) 99, 585, 616, 2902, 3765
HspAI GCGC 5 cut(s) 121, 1471, 1532, 1654, 3794
KroI GCCGGC 1 cut(s) 4389
KroNI GCCGGC 1 cut(s) 4391
Ksp22I TGATCA 3 cut(s) 769, 2860, 4306
LguI GCTCTTC 1 cut(s) 3260
LmnI GCTCC 5 cut(s) 688, 980, 2567, 3807, 3964
LweI GCATC 8 cut(s) 194, 1342, 2128, 2707, 2788, 2872, 4113, 4210
MaeI CTAG 5 cut(s) 1077, 1271, 2756, 2922, 3078
MaeII ACGT 5 cut(s) 99, 585, 616, 2902, 3765
MfeI CAATTG 2 cut(s) 658, 4365
MflI RGATCY 6 cut(s) 244, 733, 2350, 2701, 2783, 2836
MhlI GDGCHC 3 cut(s) 674, 1906, 3804
MlsI TGGCCA 1 cut(s) 1115
MluNI TGGCCA 1 cut(s) 1115
MlyI GAGTC 6 cut(s) 392, 1375, 2108, 3336, 3718, 4121
MmeI TCCRAC 5 cut(s) 57, 676, 2076, 3600, 4046
Mox20I TGGCCA 1 cut(s) 1115
Mph1103I ATGCAT 2 cut(s) 283, 1635
MroNI GCCGGC 1 cut(s) 4389
MroXI GAANNNNTTC 1 cut(s) 3573
MscI TGGCCA 1 cut(s) 1115
MslI CAYNNNNRTG 4 cut(s) 2250, 2477, 2826, 2949
Msp20I TGGCCA 1 cut(s) 1115
MspA1I CMGCKG 4 cut(s) 2078, 2462, 3260, 3686
MspI CCGG 3 cut(s) 668, 787, 4390
MspR9I CCNGG 8 cut(s) 449, 669, 787, 788, 1883, 3447, 3975, 4135
MunI CAATTG 2 cut(s) 658, 4365
Mva1269I GAATGC 1 cut(s) 2009
MvaI CCWGG 5 cut(s) 449, 1883, 3447, 3975, 4135
MvnI CGCG 1 cut(s) 123
NaeI GCCGGC 1 cut(s) 4391
NciI CCSGG 3 cut(s) 669, 787, 788
NcoI CCATGG 1 cut(s) 479
NdeI CATATG 3 cut(s) 283, 337, 1333
NgoMIV GCCGGC 1 cut(s) 4389
NlaIV GGNNCC 6 cut(s) 200, 982, 1983, 2046, 2191, 3441
NmeAIII GCCGAG 2 cut(s) 406, 4412
NmuCI GTSAC 8 cut(s) 95, 128, 326, 2252, 2819, 3840, 4298, 4369
NsiI ATGCAT 2 cut(s) 283, 1635
NspI RCATGY 7 cut(s) 145, 1748, 2063, 2070, 2439, 3605, 3959
NspV TTCGAA 1 cut(s) 3901
OliI CACNNNNGTG 2 cut(s) 2250, 2826
PaeR7I CTCGAG 2 cut(s) 1731, 3226
PagI TCATGA 3 cut(s) 847, 1717, 3945
PciI ACATGT 1 cut(s) 2435
PciSI GCTCTTC 1 cut(s) 3260
PcsI WCGNNNNNNNCGW 1 cut(s) 2896
PctI GAATGC 1 cut(s) 2009
PdiI GCCGGC 1 cut(s) 4391
PdmI GAANNNNTTC 1 cut(s) 3573
Pfl23II CGTACG 1 cut(s) 1613
PflMI CCANNNNNTGG 4 cut(s) 208, 238, 1607, 2981
PleI GAGTC 6 cut(s) 391, 1374, 2107, 3336, 3718, 4120
PpsI GAGTC 6 cut(s) 391, 1374, 2107, 3336, 3718, 4120
Ppu21I YACGTR 1 cut(s) 617
PscI ACATGT 1 cut(s) 2435
PshAI GACNNNNGTC 1 cut(s) 3346
PshBI ATTAAT 1 cut(s) 2298
PsiI TTATAA 2 cut(s) 3855, 4247
Psp6I CCWGG 5 cut(s) 447, 1881, 3445, 3973, 4133
PspEI GGTNACC 3 cut(s) 326, 2819, 3840
PspGI CCWGG 5 cut(s) 447, 1881, 3445, 3973, 4133
PspLI CGTACG 1 cut(s) 1613
PspN4I GGNNCC 6 cut(s) 200, 982, 1983, 2046, 2191, 3441
PspPI GGNCC 8 cut(s) 1885, 1981, 2189, 2320, 2693, 3632, 3833, 3932
PspXI VCTCGAGB 2 cut(s) 1731, 3226
PstI CTGCAG 3 cut(s) 3259, 3661, 3691
PstNI CAGNNNCTG 5 cut(s) 3452, 3635, 3746, 3815, 4302
PsuI RGATCY 6 cut(s) 244, 733, 2350, 2701, 2783, 2836
PvuII CAGCTG 4 cut(s) 2078, 2462, 3260, 3686
RseI CAYNNNNRTG 4 cut(s) 2250, 2477, 2826, 2949
SalI GTCGAC 1 cut(s) 474
SapI GCTCTTC 1 cut(s) 3260
Sau96I GGNCC 8 cut(s) 1885, 1981, 2189, 2320, 2693, 3632, 3833, 3932
ScaI AGTACT 2 cut(s) 1318, 3322
SchI GAGTC 6 cut(s) 392, 1375, 2108, 3336, 3718, 4121
ScrFI CCNGG 8 cut(s) 449, 669, 787, 788, 1883, 3447, 3975, 4135
SduI GDGCHC 3 cut(s) 674, 1906, 3804
SfaNI GCATC 8 cut(s) 194, 1342, 2128, 2707, 2788, 2872, 4113, 4210
SfcI CTRYAG 3 cut(s) 3255, 3657, 3687
Sfr274I CTCGAG 2 cut(s) 1731, 3226
SfuI TTCGAA 1 cut(s) 3901
SinI GGWCC 3 cut(s) 2320, 2693, 3833
SlaI CTCGAG 2 cut(s) 1731, 3226
SmaI CCCGGG 1 cut(s) 788
SmiI ATTTAAAT 1 cut(s) 1285
SmiMI CAYNNNNRTG 4 cut(s) 2250, 2477, 2826, 2949
SmlI CTYRAG 5 cut(s) 812, 1731, 1927, 3226, 3877
SmoI CTYRAG 5 cut(s) 812, 1731, 1927, 3226, 3877
SsiI CCGC 4 cut(s) 1247, 1796, 3174, 3184
SspI AATATT 3 cut(s) 1541, 1878, 2738
SspMI CTAG 5 cut(s) 1077, 1271, 2756, 2922, 3078
StyD4I CCNGG 8 cut(s) 447, 667, 785, 786, 1881, 3445, 3973, 4133
StyI CCWWGG 2 cut(s) 479, 861
SwaI ATTTAAAT 1 cut(s) 1285
TaiI ACGT 5 cut(s) 102, 588, 619, 2905, 3768
TaqII GACCGA 3 cut(s) 564, 580, 3828
TatI WGTACW 5 cut(s) 172, 1316, 2143, 3320, 4413
TauI GCSGC 2 cut(s) 1250, 1799
TscAI CASTG 9 cut(s) 213, 890, 1039, 1047, 1911, 2055, 3217, 4243, 4303
TseFI GTSAC 8 cut(s) 95, 128, 326, 2252, 2819, 3840, 4298, 4369
Tsp45I GTSAC 8 cut(s) 95, 128, 326, 2252, 2819, 3840, 4298, 4369
TspGWI ACGGA 3 cut(s) 103, 2347, 4082
TspMI CCCGGG 1 cut(s) 786
TspRI CASTG 9 cut(s) 213, 890, 1039, 1047, 1911, 2055, 3217, 4243, 4303
Van91I CCANNNNNTGG 4 cut(s) 208, 238, 1607, 2981
VpaK11BI GGWCC 3 cut(s) 2320, 2693, 3833
VspI ATTAAT 1 cut(s) 2298
XbaI TCTAGA 2 cut(s) 2755, 3077
XceI RCATGY 7 cut(s) 145, 1748, 2063, 2070, 2439, 3605, 3959
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XhoI CTCGAG 2 cut(s) 1731, 3226
XmaI CCCGGG 1 cut(s) 786
XmiI GTMKAC 1 cut(s) 475
XmnI GAANNNNTTC 1 cut(s) 3573
XspI CTAG 5 cut(s) 1077, 1271, 2756, 2922, 3078
ZrmI AGTACT 2 cut(s) 1318, 3322
Zsp2I ATGCAT 2 cut(s) 283, 1635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.