Rorug02G0320100

Clustered mitochondria protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004812
Physical Location & Seq
Forward (+)
39141694 .. 39154476
12783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0320100.1

Sequence Viewer

Length: 1119 bp
ATGATGGCTGGTGTGGACTTACCGGCCGATCTGAAACCGGTTGCTGATGAAGTGAGAGAGAGTCCTGAAGAGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAATATGAGACAGTGTTTTGGGTTGGTGAGGATAATAAAGATGACTCCTTCAGCCTAACTGAGATACCAAAGCCTCGATCTTTGAAAATTATATATTCTTACATCAACATATTAGATGCTATTACCCATGAAAAATGGATCTTCACAGACTTTTGGTCTGGTCTCCTAATTCTAAACTCCATGAGCTTTGGGACAGTGTGCACTCTGGTTGTTGTAATGTTTTGGATTGAGCGGAAAACCCGTTTGTCCTCACTGTTCAAGGAGAATATCAGGTTGGCGGAAAAGTCGTTTTCGTCCTTCCTTTTGTCAGCGTTGGACAGGCGAAAGAAGAGAGAGGAGAAGATCTATTGCAAGAGGAAAGGAGGAGATCTATCGGGTCTGCAAAGAGGGATAGAAGAGAGGAAAGGAGAAGATCTATTGGGTCTGGGATCGAAAAAAGCGAAAAAAAAGAGTGGAAAGAAAAAACCGGTTGCAAAGAATTTAGGAACAGTTTGCAGGCAGATTCTTCAGTTGTCTTGCATTGAGGTCTGCTGTAGGAAAACTGAGGCAACGATTAGGGATTCCGCAGACATTGAATCGACATCACTGTTGACTGCAGATCTATTAAGAGTTTTGGTGAAAATTGAGAGCTTCGAAACCATTCACAAGCAGGAAAAAATCATTGAAGCTTTCTATGGAGTCATGATTGCTCGGATTGATCTTGGAGTTGAAATCCCACTCAAACAGATTCCAATGGTCCAAGAGAAAATAATTCAAGTGTGTGGGCAGCTAAACAATCAAGTATTTGTAGCTTCTCAACTACTTGAATCAATGATTGAATACCCAACCCCAACACACGTTGAGGAAAGGATATTTCTTCCTTGCCTTGGTGGTGAATTGGACAGTGAGTGTGATGAACCAGTTTCAATGAAACTGTCTACACACAATCAAGAAGAGCTACTAGATTGCAAAACACTTTCAATGAAACTGTCTACACACAATCAAGAAGAGCTACTAGATTGCAAAACACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU_N TPR_12 eIF3_p135

Protein Analysis

372

Amino Acids

42.6

Weight (kDa)

5.81

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK PF00224 234 - 316 3.9e-21 Pyruvate kinase, barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 337
AccI GTMKAC 2 cut(s) 1022, 1076
AciI CCGC 3 cut(s) 337, 383, 669
AclWI GGATC 2 cut(s) 251, 541
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 1 cut(s) 583
AcuI CTGAAG 3 cut(s) 87, 139, 596
AfiI CCNNNNNNNGG 1 cut(s) 971
AflIII ACRYGT 1 cut(s) 940
AgeI ACCGGT 2 cut(s) 37, 571
AhdI GACNNNNNGTC 1 cut(s) 259
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 7 cut(s) 291, 735, 773, 874, 896, 1042, 1096
AluI AGCT 7 cut(s) 291, 735, 773, 874, 896, 1042, 1096
Alw21I GWGCWC 1 cut(s) 308
Alw26I GTCTC 2 cut(s) 107, 272
Alw44I GTGCAC 1 cut(s) 304
AlwI GGATC 2 cut(s) 251, 541
AoxI GGCC 1 cut(s) 24
ApaLI GTGCAC 1 cut(s) 304
ApeKI GCWGC 1 cut(s) 871
ApoI RAATTY 1 cut(s) 583
AsiGI ACCGGT 2 cut(s) 37, 571
Asp700I GAANNNNTTC 1 cut(s) 744
AspS9I GGNCC 1 cut(s) 841
AsuHPI GGTGA 3 cut(s) 143, 733, 989
AsuII TTCGAA 1 cut(s) 738
AvaII GGWCC 1 cut(s) 841
BaeGI GKGCMC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 308
BbvI GCAGC 1 cut(s) 883
BcoDI GTCTC 2 cut(s) 107, 272
BfaI CTAG 2 cut(s) 1046, 1100
BfmI CTRYAG 2 cut(s) 637, 699
BglII AGATCT 4 cut(s) 447, 472, 517, 703
BisI GCNGC 1 cut(s) 872
BlsI GCNGC 1 cut(s) 873
Bme18I GGWCC 1 cut(s) 841
BmeRI GACNNNNNGTC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 841
BmsI GCATC 1 cut(s) 211
Bpu14I TTCGAA 1 cut(s) 738
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 970
BsaWI WCCGGW 2 cut(s) 37, 571
Bsc4I CCNNNNNNNGG 1 cut(s) 971
Bse118I RCCGGY 3 cut(s) 22, 37, 571
Bse1I ACTGG 1 cut(s) 1004
BseDI CCNNGG 1 cut(s) 970
BseLI CCNNNNNNNGG 1 cut(s) 971
BseMII CTCAG 2 cut(s) 156, 639
BseNI ACTGG 1 cut(s) 1004
BseRI GAGGAG 2 cut(s) 455, 483
BseSI GKGCMC 1 cut(s) 308
BseX3I CGGCCG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 883
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 26
BshTI ACCGGT 2 cut(s) 37, 571
BsiEI CGRYCG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 308
BsiSI CCGG 3 cut(s) 23, 38, 572
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 971
BsmAI GTCTC 2 cut(s) 107, 272
BsmFI GGGAC 1 cut(s) 310
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 1 cut(s) 272
Bsp119I TTCGAA 1 cut(s) 738
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 9 cut(s) 28, 182, 243, 447, 472, 517, 533, 703, 802
BspACI CCGC 3 cut(s) 337, 383, 669
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 2 cut(s) 157, 640
BspHI TCATGA 1 cut(s) 786
BspMAI CTGCAG 1 cut(s) 703
BspPI GGATC 2 cut(s) 251, 541
BspQI GCTCTTC 2 cut(s) 1032, 1086
BspT104I TTCGAA 1 cut(s) 738
BspTNI GGTCTC 1 cut(s) 272
BsrBI CCGCTC 1 cut(s) 337
BsrFI RCCGGY 3 cut(s) 22, 37, 571
BsrI ACTGG 1 cut(s) 1004
BssAI RCCGGY 3 cut(s) 22, 37, 571
BssECI CCNNGG 1 cut(s) 970
BssMI GATC 9 cut(s) 28, 182, 243, 447, 472, 517, 533, 703, 802
BssT1I CCWWGG 1 cut(s) 970
Bst4CI ACNGT 8 cut(s) 118, 301, 360, 595, 693, 989, 1020, 1074
Bst6I CTCTTC 5 cut(s) 63, 428, 495, 1032, 1086
BstBI TTCGAA 1 cut(s) 738
BstC8I GCNNGC 1 cut(s) 602
BstDEI CTNAG 2 cut(s) 165, 648
BstKTI GATC 9 cut(s) 31, 185, 246, 450, 475, 520, 536, 706, 805
BstMAI GTCTC 2 cut(s) 107, 272
BstMBI GATC 9 cut(s) 28, 182, 243, 447, 472, 517, 533, 703, 802
BstMCI CGRYCG 1 cut(s) 27
BstSFI CTRYAG 2 cut(s) 637, 699
BstSLI GKGCMC 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 883
BstX2I RGATCY 5 cut(s) 243, 447, 472, 517, 703
BstYI RGATCY 5 cut(s) 243, 447, 472, 517, 703
BstZI CGGCCG 1 cut(s) 24
BsuRI GGCC 1 cut(s) 26
BtsIMutI CAGTG 5 cut(s) 123, 306, 356, 689, 994
Cac8I GCNNGC 1 cut(s) 602
CciI TCATGA 1 cut(s) 786
Cfr10I RCCGGY 3 cut(s) 22, 37, 571
Cfr13I GGNCC 1 cut(s) 841
CspAI ACCGGT 2 cut(s) 37, 571
CviAII CATG 3 cut(s) 233, 286, 787
DdeI CTNAG 2 cut(s) 165, 648
DpnI GATC 9 cut(s) 30, 184, 245, 449, 474, 519, 535, 705, 804
DpnII GATC 9 cut(s) 28, 182, 243, 447, 472, 517, 533, 703, 802
DriI GACNNNNNGTC 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 24
EagI CGGCCG 1 cut(s) 24
Eam1104I CTCTTC 5 cut(s) 63, 428, 495, 1032, 1086
Eam1105I GACNNNNNGTC 1 cut(s) 259
EarI CTCTTC 5 cut(s) 63, 428, 495, 1032, 1086
EciI GGCGGA 1 cut(s) 398
EclXI CGGCCG 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 970
Eco31I GGTCTC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 841
Eco52I CGGCCG 1 cut(s) 24
Eco57I CTGAAG 3 cut(s) 87, 139, 596
EcoT14I CCWWGG 1 cut(s) 970
ErhI CCWWGG 1 cut(s) 970
FaeI CATG 3 cut(s) 236, 289, 790
FaiI YATR 9 cut(s) 111, 197, 199, 215, 234, 287, 780, 788, 1117
FaqI GGGAC 1 cut(s) 310
FatI CATG 3 cut(s) 232, 285, 786
FblI GTMKAC 2 cut(s) 1022, 1076
Fnu4HI GCNGC 1 cut(s) 872
Fsp4HI GCNGC 1 cut(s) 872
FspBI CTAG 2 cut(s) 1046, 1100
GluI GCNGC 1 cut(s) 872
HaeIII GGCC 1 cut(s) 26
HapII CCGG 3 cut(s) 23, 38, 572
Hin1II CATG 3 cut(s) 236, 289, 790
HincII GTYRAC 1 cut(s) 696
HindII GTYRAC 1 cut(s) 696
HindIII AAGCTT 1 cut(s) 771
HinfI GANTC 8 cut(s) 61, 149, 607, 665, 680, 783, 832, 911
HpaII CCGG 3 cut(s) 23, 38, 572
HphI GGTGA 3 cut(s) 143, 733, 989
Hpy166II GTNNAC 5 cut(s) 16, 306, 696, 1023, 1077
Hpy188I TCNGA 2 cut(s) 33, 798
Hpy188III TCNNGA 4 cut(s) 65, 787, 1034, 1088
Hpy8I GTNNAC 5 cut(s) 16, 306, 696, 1023, 1077
HpyAV CCTTC 2 cut(s) 163, 412
HpyCH4III ACNGT 8 cut(s) 118, 301, 360, 595, 693, 989, 1020, 1074
HpyCH4IV ACGT 1 cut(s) 942
HpyCH4V TGCA 9 cut(s) 306, 456, 487, 578, 600, 624, 701, 1053, 1107
HpyF3I CTNAG 2 cut(s) 165, 648
HpySE526I ACGT 1 cut(s) 942
Hsp92II CATG 3 cut(s) 236, 289, 790
Kzo9I GATC 9 cut(s) 28, 182, 243, 447, 472, 517, 533, 703, 802
LguI GCTCTTC 2 cut(s) 1032, 1086
Lsp1109I GCAGC 1 cut(s) 883
LweI GCATC 1 cut(s) 211
MaeI CTAG 2 cut(s) 1046, 1100
MaeII ACGT 1 cut(s) 942
MalI GATC 9 cut(s) 30, 184, 245, 449, 474, 519, 535, 705, 804
MbiI CCGCTC 1 cut(s) 337
MboI GATC 9 cut(s) 28, 182, 243, 447, 472, 517, 533, 703, 802
MflI RGATCY 5 cut(s) 243, 447, 472, 517, 703
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 6 cut(s) 192, 273, 583, 726, 855, 980
MlyI GAGTC 3 cut(s) 70, 143, 792
MmeI TCCRAC 1 cut(s) 399
MroXI GAANNNNTTC 1 cut(s) 744
MseI TTAA 1 cut(s) 710
MspI CCGG 3 cut(s) 23, 38, 572
NdeII GATC 9 cut(s) 28, 182, 243, 447, 472, 517, 533, 703, 802
NlaIII CATG 3 cut(s) 236, 289, 790
NspV TTCGAA 1 cut(s) 738
PagI TCATGA 1 cut(s) 786
PciSI GCTCTTC 2 cut(s) 1032, 1086
PcsI WCGNNNNNNNCGW 1 cut(s) 542
PdmI GAANNNNTTC 1 cut(s) 744
PfeI GAWTC 5 cut(s) 607, 665, 680, 832, 911
PinAI ACCGGT 2 cut(s) 37, 571
PkrI GCNGC 1 cut(s) 873
PleI GAGTC 3 cut(s) 69, 143, 791
PpsI GAGTC 3 cut(s) 69, 143, 791
PspPI GGNCC 1 cut(s) 841
PstI CTGCAG 1 cut(s) 703
PsuI RGATCY 5 cut(s) 243, 447, 472, 517, 703
SapI GCTCTTC 2 cut(s) 1032, 1086
SaqAI TTAA 1 cut(s) 710
SatI GCNGC 1 cut(s) 872
Sau3AI GATC 9 cut(s) 28, 182, 243, 447, 472, 517, 533, 703, 802
Sau96I GGNCC 1 cut(s) 841
SchI GAGTC 3 cut(s) 70, 143, 792
SduI GDGCHC 1 cut(s) 308
SfaNI GCATC 1 cut(s) 211
SfcI CTRYAG 2 cut(s) 637, 699
SfuI TTCGAA 1 cut(s) 738
SinI GGWCC 1 cut(s) 841
Sse9I AATT 6 cut(s) 192, 273, 583, 726, 855, 980
SsiI CCGC 3 cut(s) 337, 383, 669
SspMI CTAG 2 cut(s) 1046, 1100
StyI CCWWGG 1 cut(s) 970
TaaI ACNGT 8 cut(s) 118, 301, 360, 595, 693, 989, 1020, 1074
TaiI ACGT 1 cut(s) 945
TaqI TCGA 4 cut(s) 181, 536, 683, 738
TasI AATT 6 cut(s) 192, 273, 583, 726, 855, 980
TfiI GAWTC 5 cut(s) 607, 665, 680, 832, 911
Tru1I TTAA 1 cut(s) 710
Tru9I TTAA 1 cut(s) 710
TscAI CASTG 5 cut(s) 123, 306, 363, 696, 994
TseI GCWGC 1 cut(s) 871
TspDTI ATGAA 5 cut(s) 63, 249, 1014, 1028, 1082
TspRI CASTG 5 cut(s) 123, 306, 363, 696, 994
VneI GTGCAC 1 cut(s) 304
VpaK11BI GGWCC 1 cut(s) 841
XapI RAATTY 1 cut(s) 583
XmiI GTMKAC 2 cut(s) 1022, 1076
XmnI GAANNNNTTC 1 cut(s) 744
XspI CTAG 2 cut(s) 1046, 1100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.