Rh2CG356100

Clustered mitochondria protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004812
Physical Location & Seq
Reverse (-)
48234545 .. 48245102
10558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG356100.1

Sequence Viewer

Length: 4956 bp
ATGGCCCCAAAATCAGGCAGAGGCAAAAACAACAAGGCCAAGTCTGACAAGAAGAAGAAGGAAGATAAGGTTCCTAGTGTTCTTGACATCACTGTCATTACTCCATATGACACACAAGTTATTCTTAAGGGTATCTCCACTGACAAGATACTTGATGTTAAAAGACTACTGGCTGTGAATGTAGAGACGTGTCATCTTACAAACTATTCCTTGTCTCATGAAGTGAAAGGGAAGAGACTGAATGAAAGGGTGGAGGTGGTTAGTCTGAAACCCTGTCTTCTGAAAATGGTTGAAGAGGAATATAGCGATGAAGCCGAAGCTGTTGCCCACGTGCGGCATCTGCTGGACCTGGTGGCCTGCACGACCCGATTCGCCAAGCCCAAACGGTCCGCTGCCGCCCCGGACTCCAAGTCCAAGAAGAGCGGCACCAAACCCGTCAACAAGAACTCCGGCCCATCCTCACCGTCCGTTTCGGCTATCTCAGAGAGCCTCGGGATGGTCGCCATTCACCCGACCCCCAAGCTCTCCGACTTCTACGACTTCTTCTCTTTTTCACACCTCACCCCTCCCATTCTCCATTTACGGAGGTGTGACGTGGACGACGCACAGGAGAGGCGCGACGGTGACTATTTTCACATGCAGATTAAGATTTGCAATGGGAAGCAAGTACAAGTGGTTGCATCAGTAAAAGGGTTCCACACAGTGGGAAAGCAGTTTTTACAAAGCCACTCATTGGTGGATCTTCTGCAACAGCTCAGTAGAGCTTTTGCTAATGCATATGAATCCTTGATGAAAGCTTTTGTAGAGCATAACAAGTTTGGTGACCTTCCATATGGTTTTCGAGCAAACACATGGCTTGTTCCTCCATCTGTTGCCGAGTCTCCATCAAATTTTCCATCTCTGCCGACTGAAGATGAAAATTGGGGAGGAAATGGTGGAGGCCAGGGAAGAAATGGTGAATACGATCGTCGACCATGGGCTACTGACTTTGCAATTTTGGCTTGCCTGCCTTGCAAAACTGAGGAGGAGAGGGTTGTTCGAGACCGAAAAGCTTTTTTGCTTCATTGTAAATTCATTGATGTATCGGTCTTTAAAGCTGCTGCTGCAATACGTGGTATAATAGATTCTACTGTGAATGGAAAGGAGACAACCAATTGTTCTCCGGGCTCTGTTCTTTATGAGGAGCGTGTTGGAGACTTGTCCATTGTTGTAAAACATGATATAACAGATCCATTGGCGAAGTCCGAAGTAATAGTTAGTGGTGATCATCCATGCAGTACCCGGGAAGTTGCTCAGAGGTGTTTACTCAAGGGTTTAACTTCTGATGAGAGTGTGGTTGTTCATGATACACCCTCCTTGGGTGTGGTCAATGTAAGGCACTGTGGATACATTGCAACAGTTAAAGTTGTTGGTAAAATAAAGAAGGGAAGCTGTGAGGCTAAAGATATTGACATTGAAGATCAACCAGATGGAGGAGCCAATTCTCTTAATGTGAACAGCCTGAGGGTTCTGCTTCAAAAGTTCAACACTGAATCAGTGGATCACTCTAATTCAGATAGTTTAGAAACTTCTAGGCGTCTGGTTCAAAGAGTATTAAAAGAGAGCTTGACGAAGTTAGAGGATGAGCCTGCCAATTCTGAGAGGTCTATCAGATGGGAACTTGGTTCTTGCTGGTTGCAACATCTGCAAAAGCAGGAAACGCCAGTAAACAATTCTGATAGTCCCGAGGATGATATTGAGGCGGCTGAACCAGTTGTTAAAGGTCTAGGGAAGCAATTTAAATTTTTGAAGAAGAGGGAAAAGAAAACAATTACTGAAGCTGGAACATATGATGAGGAAGACATTGATGCTTATTCTTTGAGTCTAAATGGGGGATCAGATAAATTAGAGGTAAACAATGGCGAGAGTCATGAGATCAGCAATGAGGCAGAATTGAAGACTTTAATTTCAGAAGAAGCCTATTTGCGCCTGAAAGAAGCTGGAACTGGTCTTCATCTAAAGTCAGCAGATGAGCTTATCAAGATGGCGCACAAATATTATGATGAAGTTGCCTTGCCAAAGCTGGTAACAGACTTTGGATCACTTGAACTCTCTCCAGTTGATGGCCGTACGCTGACAGATTTCATGCATTTAAGGGGGCTGAAAATGCGCTCTTTGGGTCGAGTGGTTGAACTTTCGGAGAAACTTCCTCATATACAGTCTCTTTGTATTCATGAGATGATTACTCGAGCTTTCAAGCATGTGCTTGAAGCAGTCATTGCTTCTGTTGGCAAAATAACTGACTTGTCTGCGGCAATAGCTGCAACCCTAAATTTTCTACTTGGAGGCTCTGCGATGGATGATGATGTCCTCAAATTGCAATGGCTACGAATATTCCTGGCCCGAAAATTTGGTTGGGCACTGAAAGATGAATTTCAGCACTTGAGGAAGTTATCAATTCTCCGAGGACTTTGCCATAAGGTTGGGCTGGAGTTGGCCCCAAGAGATTATGACATGGAATGCCATAATCCTTTCAGCATATATGACATTATTAGCATGGTTCCAGTGTGTAAGCATGTAGCATGTTCTTCAGCTGATGGACGAAATTTGTTGGAGTCATCTAAAATTGCTCTTGATAAAGGAAAGTTAGAGGATGCTGTACATTTCGGAACAAAGGCACTAGCAAAGATGATAGCTGTCTGTGGCCCCTATCATCGAGTTACTGCAAGTGCTTATAGCCTTTTAGCAGTAGTCCTTTACCACACGGGTGACTTTAATCAGGCAACCATTTATCAGCAGAAGGCTTTAGCTATTAATGAAAGGGAACTTGGGCTGGACCATCCAGATACCATGAAAAGCTATGGGGATCTTTCCGTTTTTTACTACCGTCTTCAATACATCGAATTGGCTTTGAAGTATGTAAATCGTGCGTTGTTTCTTCTTCATTTTACATGTGGACTATCTCACCCTAACACAGCTGCGACATACATAAATGTGGCTATGATGGAGGAGGGCATGGGAAATGTCCATGTTGCTCTCAGATACCTACATGAAGCTTTGAAGTGTAACCAGAGACTATTAGGAGCAGATCACATACAGACTGCTGCAAGCTATCATGCCATAGCCATAGCTCTTTCATTGATGGAAGCATATTCTCTAAGTGTGCAACATGAGCAAACAACACTTAGGATACTTAAAGACAAACTTGGACCTGAGGATCTTCGTACTCAGGATGCAGCAGCATGGCTTGAATATTTTGAATCTAAATCTCTAGAGCAGCAAGAAGCAGCACGAAATGGATCTCCAAAGCCTGATGCCTTGATTGCAAGCAAAGGTCACCTTAGTGTGTCAGATCTCCTTGATTACATTAGCCCTGATCAAGATTCAAAAGTAAATGATGCACATAGGAAGCAGCGACGTGCAAAGGTTTATCAGTCGAGTGATACCATCTATGAGGCACATCAAGATGTAATAGCTGACGATGACTTCCCAAGTGATGGCCTTGAAAACCCTATGATTTTGATAGATGATAATACTGAAGTAGTTGAGGAAAGATGGGTTCATCAGGGACGTCTGGAGGAAAAAGATGATGTCTCTAGAAATGGTTTGTCAGTTGCAAGTGTAACTGCCGAAGAAACAACTTCAGATGAAGGATGGCAAGAAGCCAATTCAAAGGGGAGGTCTGGGAATACAGCTACTGGGCGGAGGTTCAGTAGAAAGAGGCCAGACAGTGAATCTTCACACTTTAGAGAAACCAAATACTCGAGGGAAGTCAAATCCTCATCACAGACTGCAGCTGTGAAGAGCTTTCTAAATGATTCATCTTCATCAAAGCAATCAAAGGTTCGTACTGGAGAGGATTCAGTTAGACTCCAGTCCAAAACTACTGTTTCTAAAGTCTTCTCTACTCCAGCCACTCTTACGAACTTGACTTCAAAATCTGTATCTTACAAACAAGTAGCTTTGGCACCTCCAGGTACTGTTCTAAAGTCATTGCTGGATAAAGTTGACGACCTAAATGTGGAAGAATCTGAAACAAAGGAGTGTAACCCCCCACCTGAGACATTGAAAACTGAAGAAAGCATAGGTGTAGTTGAACTCATTCCAAATGATGAGAACGAAGGAACACATGCAAGTTCAACCCGGTTGGAAGAAACAGGCCCTGAAACTCTGGAAGAAAGGTCTGCAGAGAAAAATGGAAGTAAGCTGTCAGCTGCAGCAGAACCATTCAATCCAAGACCACTCACCATGACTCACCCTCTGAATCCAGTTGCTGTTACAAGTGTATATGACGTGAGAGCCAGTCAAGCAATGCTTTCTGCGCCTGTGCTCCCCCCAGTAGCTGCCAGAGTTCCTTGTGGTCCTCGGTCACCTTTGTATTATAAAACCAATTATTCTTTTCGCTTGAGGCAAGGTGTTCAAAAATTTCGAAGACCCCTTTCAGAAAGAAGTGGATCAGGGCCTCCAAAAATCATGAATCCACATGCTCCAGAGTTTGTTCCTGGGAGAACTTTGCAAGCAGATTACATGAATGAATATGCAGAATTTCCAACTGAAGCAAATTCCTCATTTGAAATGAATAGGGCTGAAGAGACGGATGAAAAATCGAATGGTAAAGCTGAGAGAAAGAGCATCTCTGAGTCTGAGAAGTCAGAGCTTGCAAGGCAGATATTGCTGAGCTTCATAGTAAAATCTGTCCAGCACAACAAGGATTCTGAAAGTGAAAGTAAGCAGGAAAATAATTTAGATGCCGTAGAGAAGGACAGTGCAATTATAAAGATTCACTATGGAAATGAAGGAAAGAAGGACTTAGTTTCTCAATCCAGTGACTGTGATCAATCAAAAACAACGGATGTAGATACAAATGAAGTTGGTGATAGTGAAGGATTTACAGTTGTGACAAAGAGGAGAAGAAGCCGGCAGCAGTTCAGAAGTGAGTTGTACAATCAGCAATCCATCTCGGCTTCTGTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU_N TPR_12 eIF3_p135

Protein Analysis

1651

Amino Acids

183.19

Weight (kDa)

6.12

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLU_N PF15044 47 - 118 4e-08 Mitochondrial function, CLU-N-term
eIF3_p135 PF12807 697 - 779 1.5e-18 Translation initiation factor eIF3 subunit 135
TPR_12 PF13424 870 - 932 2.5e-08 Tetratricopeptide repeat
TPR_NPHP3 PF24885 872 - 971 2.3e-06 Nephrocystin-3 TPR domain
TPR_12 PF13424 901 - 971 6.8e-11 Tetratricopeptide repeat
TPR_10 PF13374 901 - 942 2.5e-10 Tetratricopeptide repeat
TPR_12 PF13424 985 - 1059 2e-11 Tetratricopeptide repeat
TPR_10 PF13374 985 - 1025 2.9e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 4362, 4754
AasI GACNNNNNNGTC 1 cut(s) 92
AatII GACGTC 1 cut(s) 3553
AccB1I GGYRCC 2 cut(s) 425, 3946
AccB7I CCANNNNNTGG 4 cut(s) 703, 733, 2102, 3476
AccBSI CCGCTC 1 cut(s) 423
AccI GTMKAC 1 cut(s) 970
AccII CGCG 1 cut(s) 618
AciI CCGC 7 cut(s) 334, 390, 396, 423, 1742, 2291, 3682
AclWI GGATC 9 cut(s) 747, 1223, 1548, 1882, 2086, 2853, 3204, 3286, 4441
AcoI YGGCCR 1 cut(s) 2104
AcuI CTGAAG 8 cut(s) 930, 1836, 2553, 3537, 3606, 4074, 4554, 4587
AcvI CACGTG 1 cut(s) 331
AcyI GRCGYC 2 cut(s) 1576, 3550
AdeI CACNNNGTG 1 cut(s) 703
AfaI GTAC 8 cut(s) 669, 1279, 2110, 2640, 3205, 3829, 3958, 4922
AflII CTTAAG 1 cut(s) 125
AflIII ACRYGT 2 cut(s) 188, 2930
AhdI GACNNNNNGTC 1 cut(s) 409
AjiI CACGTC 4 cut(s) 189, 595, 3398, 4273
AjnI CCWGG 5 cut(s) 348, 942, 2376, 3952, 4480
AjuI GAANNNNNNNTTGG 4 cut(s) 2377, 2409, 2790, 2822
AleI CACNNNNGTG 2 cut(s) 2745, 3321
Alw21I GWGCWC 1 cut(s) 4311
AlwI GGATC 9 cut(s) 747, 1223, 1548, 1882, 2086, 2853, 3204, 3286, 4441
AlwNI CAGNNNCTG 6 cut(s) 3677, 3959, 4142, 4253, 4322, 4809
Ama87I CYCGRG 5 cut(s) 491, 1281, 1724, 2226, 3742
ArsI GACNNNNNNTTYG 2 cut(s) 3644, 3676
AseI ATTAAT 1 cut(s) 2793
Asp700I GAANNNNTTC 1 cut(s) 4080
AspLEI GCGC 5 cut(s) 618, 1968, 2029, 2151, 4303
AsuC2I CCSGG 5 cut(s) 401, 1164, 1282, 1283, 4123
AsuII TTCGAA 1 cut(s) 4408
AvaI CYCGRG 5 cut(s) 491, 1281, 1724, 2226, 3742
AvaII GGWCC 5 cut(s) 346, 387, 2815, 3188, 4340
AxyI CCTNAGG 2 cut(s) 1502, 3192
BaeGI GKGCMC 1 cut(s) 2401
BanI GGYRCC 2 cut(s) 425, 3946
BanII GRGCYC 1 cut(s) 1169
BbrPI CACGTG 1 cut(s) 331
BbsI GAAGAC 7 cut(s) 269, 1845, 1943, 1982, 2861, 3871, 4417
Bbv12I GWGCWC 1 cut(s) 4311
BceAI ACGGC 2 cut(s) 2091, 4715
BcgI CGANNNNNNTGC 4 cut(s) 305, 339, 2433, 2467
BciT130I CCWGG 5 cut(s) 350, 944, 2378, 3954, 4482
BciVI GTATCC 2 cut(s) 1379, 3162
BclI TGATCA 3 cut(s) 1264, 3355, 4813
BcnI CCSGG 5 cut(s) 401, 1164, 1282, 1283, 4123
BfaI CTAG 6 cut(s) 75, 1572, 1766, 2660, 3251, 3576
BfmI CTRYAG 3 cut(s) 3771, 4164, 4194
BfrI CTTAAG 1 cut(s) 125
BfuI GTATCC 2 cut(s) 1379, 3162
BglII AGATCT 1 cut(s) 3331
BlpI GCTNAGC 1 cut(s) 4655
Bme18I GGWCC 5 cut(s) 346, 387, 2815, 3188, 4340
BmeRI GACNNNNNGTC 1 cut(s) 409
BmeT110I CYCGRG 5 cut(s) 491, 1281, 1724, 2226, 3742
BmgBI CACGTC 4 cut(s) 189, 595, 3398, 4273
BmiI GGNNCC 9 cut(s) 6, 72, 427, 695, 1477, 2478, 2541, 2686, 3948
BmrI ACTGGG 2 cut(s) 3687, 4310
BmsI GCATC 9 cut(s) 346, 689, 1837, 2623, 3202, 3283, 3367, 4620, 4717
BmuI ACTGGG 2 cut(s) 3687, 4310
BoxI GACNNNNGTC 1 cut(s) 3853
BpiI GAAGAC 7 cut(s) 269, 1845, 1943, 1982, 2861, 3871, 4417
BpmI CTGGAG 8 cut(s) 2079, 2489, 3575, 3836, 3852, 3873, 3936, 4452
Bpu1102I GCTNAGC 1 cut(s) 4655
Bpu14I TTCGAA 1 cut(s) 4408
BpuEI CTTGAG 3 cut(s) 1292, 2443, 4405
BpuMI CCSGG 5 cut(s) 401, 1164, 1282, 1283, 4123
BsaAI YACGTR 2 cut(s) 331, 1112
BsaHI GRCGYC 2 cut(s) 1576, 3550
BsaI GGTCTC 1 cut(s) 1035
BsaXI ACNNNNNCTCC 4 cut(s) 431, 461, 3676, 3706
Bse118I RCCGGY 1 cut(s) 4896
Bse21I CCTNAGG 2 cut(s) 1502, 3192
Bse3DI GCAATG 7 cut(s) 661, 1389, 1927, 2256, 2366, 3971, 4296
BseBI CCWGG 5 cut(s) 350, 944, 2378, 3954, 4482
BseMI GCAATG 7 cut(s) 661, 1389, 1927, 2256, 2366, 3971, 4296
BseRI GAGGAG 6 cut(s) 1037, 1040, 1196, 1488, 3002, 4900
BseSI GKGCMC 1 cut(s) 2401
BsgI GTGCAG 1 cut(s) 343
Bsh1236I CGCG 1 cut(s) 618
Bsh1285I CGRYCG 1 cut(s) 967
BshNI GGYRCC 2 cut(s) 425, 3946
BsiEI CGRYCG 1 cut(s) 967
BsiHKAI GWGCWC 1 cut(s) 4311
BsiHKCI CYCGRG 5 cut(s) 491, 1281, 1724, 2226, 3742
BsiSI CCGG 6 cut(s) 401, 450, 1163, 1282, 4123, 4897
BsiWI CGTACG 1 cut(s) 2108
BslFI GGGAC 2 cut(s) 1707, 3561
BsmBI CGTCTC 2 cut(s) 179, 4565
BsmFI GGGAC 2 cut(s) 1707, 3561
BsmI GAATGC 1 cut(s) 2504
Bso31I GGTCTC 1 cut(s) 1035
BsoBI CYCGRG 5 cut(s) 491, 1281, 1724, 2226, 3742
Bsp119I TTCGAA 1 cut(s) 4408
Bsp1286I GDGCHC 3 cut(s) 1169, 2401, 4311
Bsp1407I TGTACA 2 cut(s) 2638, 4920
Bsp1720I GCTNAGC 1 cut(s) 4655
Bsp19I CCATGG 1 cut(s) 974
BspACI CCGC 7 cut(s) 334, 390, 396, 423, 1742, 2291, 3682
BspFNI CGCG 1 cut(s) 618
BspHI TCATGA 5 cut(s) 217, 1342, 1909, 2212, 4452
BspLI GGNNCC 9 cut(s) 6, 72, 427, 695, 1477, 2478, 2541, 2686, 3948
BspMAI CTGCAG 3 cut(s) 3775, 4168, 4198
BspPI GGATC 9 cut(s) 747, 1223, 1548, 1882, 2086, 2853, 3204, 3286, 4441
BspQI GCTCTTC 2 cut(s) 413, 3776
BspT104I TTCGAA 1 cut(s) 4408
BspT107I GGYRCC 2 cut(s) 425, 3946
BspTI CTTAAG 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 1035
BsrBI CCGCTC 1 cut(s) 423
BsrDI GCAATG 7 cut(s) 661, 1389, 1927, 2256, 2366, 3971, 4296
BsrFI RCCGGY 1 cut(s) 4896
BsrGI TGTACA 2 cut(s) 2638, 4920
BssAI RCCGGY 1 cut(s) 4896
BssNI GRCGYC 2 cut(s) 1576, 3550
BssT1I CCWWGG 2 cut(s) 974, 1356
Bst2UI CCWGG 5 cut(s) 350, 944, 2378, 3954, 4482
Bst6I CTCTTC 6 cut(s) 227, 288, 413, 1787, 3776, 4563
BstACI GRCGYC 2 cut(s) 1576, 3550
BstAFI CTTAAG 1 cut(s) 125
BstAPI GCANNNNNTGC 4 cut(s) 1684, 2258, 2300, 4651
BstAUI TGTACA 2 cut(s) 2638, 4920
BstBAI YACGTR 2 cut(s) 331, 1112
BstBI TTCGAA 1 cut(s) 4408
BstC8I GCNNGC 9 cut(s) 358, 1003, 1007, 1629, 3088, 3307, 4497, 4638, 4898
BstDSI CCRYGG 1 cut(s) 974
BstEII GGTNACC 3 cut(s) 821, 3314, 4347
BstFNI CGCG 1 cut(s) 618
BstHHI GCGC 5 cut(s) 618, 1968, 2029, 2151, 4303
BstMCI CGRYCG 1 cut(s) 967
BstNI CCWGG 5 cut(s) 350, 944, 2378, 3954, 4482
BstNSI RCATGY 7 cut(s) 640, 2243, 2558, 2565, 2934, 4112, 4466
BstPAI GACNNNNGTC 1 cut(s) 3853
BstPI GGTNACC 3 cut(s) 821, 3314, 4347
BstSFI CTRYAG 3 cut(s) 3771, 4164, 4194
BstSLI GKGCMC 1 cut(s) 2401
BstUI CGCG 1 cut(s) 618
BstV2I GAAGAC 7 cut(s) 269, 1845, 1943, 1982, 2861, 3871, 4417
BstX2I RGATCY 6 cut(s) 739, 1228, 2845, 3196, 3278, 3331
BstXI CCANNNNNNTGG 1 cut(s) 2462
BstYI RGATCY 6 cut(s) 739, 1228, 2845, 3196, 3278, 3331
Bsu36I CCTNAGG 2 cut(s) 1502, 3192
BsuI GTATCC 2 cut(s) 1379, 3162
BtgI CCRYGG 1 cut(s) 974
BtgZI GCGATG 2 cut(s) 321, 2348
BtrI CACGTC 4 cut(s) 189, 595, 3398, 4273
Cac8I GCNNGC 9 cut(s) 358, 1003, 1007, 1629, 3088, 3307, 4497, 4638, 4898
CaiI CAGNNNCTG 6 cut(s) 3677, 3959, 4142, 4253, 4322, 4809
CciI TCATGA 5 cut(s) 217, 1342, 1909, 2212, 4452
CfoI GCGC 5 cut(s) 618, 1968, 2029, 2151, 4303
Cfr10I RCCGGY 1 cut(s) 4896
Cfr9I CCCGGG 1 cut(s) 1281
CpoI CGGWCCG 1 cut(s) 387
CseI GACGC 2 cut(s) 611, 1565
CsiI ACCWGGT 1 cut(s) 348
Csp6I GTAC 8 cut(s) 668, 1278, 2109, 2639, 3204, 3828, 3957, 4921
CspI CGGWCCG 1 cut(s) 387
CviQI GTAC 8 cut(s) 668, 1278, 2109, 2639, 3204, 3828, 3957, 4921
DraI TTTAAA 2 cut(s) 1093, 1780
DraIII CACNNNGTG 1 cut(s) 703
DrdI GACNNNNNNGTC 1 cut(s) 92
DriI GACNNNNNGTC 1 cut(s) 409
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 2104
Eam1104I CTCTTC 6 cut(s) 227, 288, 413, 1787, 3776, 4563
Eam1105I GACNNNNNGTC 1 cut(s) 409
EarI CTCTTC 6 cut(s) 227, 288, 413, 1787, 3776, 4563
EciI GGCGGA 1 cut(s) 3697
Eco130I CCWWGG 2 cut(s) 974, 1356
Eco24I GRGCYC 1 cut(s) 1169
Eco31I GGTCTC 1 cut(s) 1035
Eco47I GGWCC 5 cut(s) 346, 387, 2815, 3188, 4340
Eco57I CTGAAG 8 cut(s) 930, 1836, 2553, 3537, 3606, 4074, 4554, 4587
Eco72I CACGTG 1 cut(s) 331
Eco81I CCTNAGG 2 cut(s) 1502, 3192
Eco88I CYCGRG 5 cut(s) 491, 1281, 1724, 2226, 3742
Eco91I GGTNACC 3 cut(s) 821, 3314, 4347
EcoO109I RGGNCCY 2 cut(s) 4139, 4439
EcoO65I GGTNACC 3 cut(s) 821, 3314, 4347
EcoRII CCWGG 5 cut(s) 348, 942, 2376, 3952, 4480
EcoT14I CCWWGG 2 cut(s) 974, 1356
EcoT22I ATGCAT 2 cut(s) 778, 2130
EcoT38I GRGCYC 1 cut(s) 1169
ErhI CCWWGG 2 cut(s) 974, 1356
Esp3I CGTCTC 2 cut(s) 179, 4565
FaqI GGGAC 2 cut(s) 1707, 3561
FauNDI CATATG 4 cut(s) 106, 778, 832, 1828
FbaI TGATCA 3 cut(s) 1264, 3355, 4813
FblI GTMKAC 1 cut(s) 970
FriOI GRGCYC 1 cut(s) 1169
FspBI CTAG 6 cut(s) 75, 1572, 1766, 2660, 3251, 3576
GlaI GCGC 5 cut(s) 617, 1967, 2028, 2150, 4302
GsuI CTGGAG 8 cut(s) 2079, 2489, 3575, 3836, 3852, 3873, 3936, 4452
HapII CCGG 6 cut(s) 401, 450, 1163, 1282, 4123, 4897
HgaI GACGC 2 cut(s) 611, 1565
HhaI GCGC 5 cut(s) 618, 1968, 2029, 2151, 4303
Hin1I GRCGYC 2 cut(s) 1576, 3550
Hin6I GCGC 5 cut(s) 616, 1966, 2027, 2149, 4301
HinP1I GCGC 5 cut(s) 616, 1966, 2027, 2149, 4301
HincII GTYRAC 3 cut(s) 439, 971, 3988
HindII GTYRAC 3 cut(s) 439, 971, 3988
HindIII AAGCTT 3 cut(s) 795, 1050, 3033
HpaII CCGG 6 cut(s) 401, 450, 1163, 1282, 4123, 4897
Hpy166II GTNNAC 9 cut(s) 439, 598, 971, 1304, 1495, 1708, 1894, 2936, 3988
Hpy8I GTNNAC 9 cut(s) 439, 598, 971, 1304, 1495, 1708, 1894, 2936, 3988
Hpy99I CGWCG 4 cut(s) 605, 623, 972, 3399
HpyCH4IV ACGT 7 cut(s) 188, 330, 594, 1111, 3397, 3550, 4272
HpySE526I ACGT 7 cut(s) 188, 330, 594, 1111, 3397, 3550, 4272
Hsp92I GRCGYC 2 cut(s) 1576, 3550
HspAI GCGC 5 cut(s) 616, 1966, 2027, 2149, 4301
KroI GCCGGC 1 cut(s) 4896
KroNI GCCGGC 1 cut(s) 4898
Ksp22I TGATCA 3 cut(s) 1264, 3355, 4813
LguI GCTCTTC 2 cut(s) 413, 3776
LmnI GCTCC 5 cut(s) 1183, 1475, 3062, 4314, 4471
LweI GCATC 9 cut(s) 346, 689, 1837, 2623, 3202, 3283, 3367, 4620, 4717
MabI ACCWGGT 1 cut(s) 348
MaeI CTAG 6 cut(s) 75, 1572, 1766, 2660, 3251, 3576
MaeII ACGT 7 cut(s) 188, 330, 594, 1111, 3397, 3550, 4272
MbiI CCGCTC 1 cut(s) 423
MfeI CAATTG 1 cut(s) 1153
MflI RGATCY 6 cut(s) 739, 1228, 2845, 3196, 3278, 3331
MhlI GDGCHC 3 cut(s) 1169, 2401, 4311
MlyI GAGTC 8 cut(s) 398, 887, 1870, 1915, 2603, 3843, 4225, 4628
MmeI TCCRAC 5 cut(s) 552, 1171, 2571, 4107, 4553
Mph1103I ATGCAT 2 cut(s) 778, 2130
MroNI GCCGGC 1 cut(s) 4896
MroXI GAANNNNTTC 1 cut(s) 4080
MslI CAYNNNNRTG 4 cut(s) 2745, 2972, 3321, 3444
MspA1I CMGCKG 5 cut(s) 392, 2573, 2957, 3776, 4193
MspCI CTTAAG 1 cut(s) 125
MspI CCGG 6 cut(s) 401, 450, 1163, 1282, 4123, 4897
MunI CAATTG 1 cut(s) 1153
Mva1269I GAATGC 1 cut(s) 2504
MvaI CCWGG 5 cut(s) 350, 944, 2378, 3954, 4482
MvnI CGCG 1 cut(s) 618
NaeI GCCGGC 1 cut(s) 4898
NciI CCSGG 5 cut(s) 401, 1164, 1282, 1283, 4123
NcoI CCATGG 1 cut(s) 974
NdeI CATATG 4 cut(s) 106, 778, 832, 1828
NgoMIV GCCGGC 1 cut(s) 4896
NlaIV GGNNCC 9 cut(s) 6, 72, 427, 695, 1477, 2478, 2541, 2686, 3948
NmeAIII GCCGAG 2 cut(s) 901, 4919
NmuCI GTSAC 8 cut(s) 590, 623, 821, 2747, 3314, 4347, 4805, 4876
NsiI ATGCAT 2 cut(s) 778, 2130
NspI RCATGY 7 cut(s) 640, 2243, 2558, 2565, 2934, 4112, 4466
NspV TTCGAA 1 cut(s) 4408
OliI CACNNNNGTG 2 cut(s) 2745, 3321
PaeR7I CTCGAG 2 cut(s) 2226, 3742
PagI TCATGA 5 cut(s) 217, 1342, 1909, 2212, 4452
PciI ACATGT 1 cut(s) 2930
PciSI GCTCTTC 2 cut(s) 413, 3776
PctI GAATGC 1 cut(s) 2504
PdiI GCCGGC 1 cut(s) 4898
PdmI GAANNNNTTC 1 cut(s) 4080
Pfl23II CGTACG 1 cut(s) 2108
PflMI CCANNNNNTGG 4 cut(s) 703, 733, 2102, 3476
Ple19I CGATCG 1 cut(s) 967
PleI GAGTC 8 cut(s) 398, 886, 1869, 1914, 2602, 3843, 4225, 4627
PmaCI CACGTG 1 cut(s) 331
PmlI CACGTG 1 cut(s) 331
PpsI GAGTC 8 cut(s) 398, 886, 1869, 1914, 2602, 3843, 4225, 4627
Ppu21I YACGTR 2 cut(s) 331, 1112
PscI ACATGT 1 cut(s) 2930
PshAI GACNNNNGTC 1 cut(s) 3853
PshBI ATTAAT 1 cut(s) 2793
PsiI TTATAA 2 cut(s) 4362, 4754
Psp6I CCWGG 5 cut(s) 348, 942, 2376, 3952, 4480
PspCI CACGTG 1 cut(s) 331
PspEI GGTNACC 3 cut(s) 821, 3314, 4347
PspGI CCWGG 5 cut(s) 348, 942, 2376, 3952, 4480
PspLI CGTACG 1 cut(s) 2108
PspN4I GGNNCC 9 cut(s) 6, 72, 427, 695, 1477, 2478, 2541, 2686, 3948
PspXI VCTCGAGB 2 cut(s) 2226, 3742
PstI CTGCAG 3 cut(s) 3775, 4168, 4198
PstNI CAGNNNCTG 6 cut(s) 3677, 3959, 4142, 4253, 4322, 4809
PsuI RGATCY 6 cut(s) 739, 1228, 2845, 3196, 3278, 3331
PvuI CGATCG 1 cut(s) 967
PvuII CAGCTG 4 cut(s) 2573, 2957, 3776, 4193
RsaI GTAC 8 cut(s) 669, 1279, 2110, 2640, 3205, 3829, 3958, 4922
RsaNI GTAC 8 cut(s) 668, 1278, 2109, 2639, 3204, 3828, 3957, 4921
RseI CAYNNNNRTG 4 cut(s) 2745, 2972, 3321, 3444
Rsr2I CGGWCCG 1 cut(s) 387
RsrII CGGWCCG 1 cut(s) 387
SalI GTCGAC 1 cut(s) 969
SapI GCTCTTC 2 cut(s) 413, 3776
SchI GAGTC 8 cut(s) 398, 887, 1870, 1915, 2603, 3843, 4225, 4628
SduI GDGCHC 3 cut(s) 1169, 2401, 4311
SexAI ACCWGGT 1 cut(s) 348
SfaNI GCATC 9 cut(s) 346, 689, 1837, 2623, 3202, 3283, 3367, 4620, 4717
SfcI CTRYAG 3 cut(s) 3771, 4164, 4194
Sfr274I CTCGAG 2 cut(s) 2226, 3742
SfuI TTCGAA 1 cut(s) 4408
SinI GGWCC 5 cut(s) 346, 387, 2815, 3188, 4340
SlaI CTCGAG 2 cut(s) 2226, 3742
SmaI CCCGGG 1 cut(s) 1283
SmiI ATTTAAAT 1 cut(s) 1780
SmiMI CAYNNNNRTG 4 cut(s) 2745, 2972, 3321, 3444
SmlI CTYRAG 6 cut(s) 125, 1307, 2226, 2422, 3742, 4384
SmoI CTYRAG 6 cut(s) 125, 1307, 2226, 2422, 3742, 4384
SsiI CCGC 7 cut(s) 334, 390, 396, 423, 1742, 2291, 3682
SspI AATATT 3 cut(s) 2036, 2373, 3233
SspMI CTAG 6 cut(s) 75, 1572, 1766, 2660, 3251, 3576
StyI CCWWGG 2 cut(s) 974, 1356
SwaI ATTTAAAT 1 cut(s) 1780
TaiI ACGT 7 cut(s) 191, 333, 597, 1114, 3400, 3553, 4275
TaqII GACCGA 3 cut(s) 1059, 1075, 4335
TatI WGTACW 3 cut(s) 667, 2638, 4920
TauI GCSGC 5 cut(s) 337, 398, 426, 1745, 2294
TseFI GTSAC 8 cut(s) 590, 623, 821, 2747, 3314, 4347, 4805, 4876
Tsp45I GTSAC 8 cut(s) 590, 623, 821, 2747, 3314, 4347, 4805, 4876
TspGWI ACGGA 5 cut(s) 457, 598, 2842, 4589, 4844
TspMI CCCGGG 1 cut(s) 1281
Van91I CCANNNNNTGG 4 cut(s) 703, 733, 2102, 3476
Vha464I CTTAAG 1 cut(s) 125
VpaK11BI GGWCC 5 cut(s) 346, 387, 2815, 3188, 4340
VspI ATTAAT 1 cut(s) 2793
XbaI TCTAGA 2 cut(s) 3250, 3575
XceI RCATGY 7 cut(s) 640, 2243, 2558, 2565, 2934, 4112, 4466
XcmI CCANNNNNNNNNTGG 1 cut(s) 950
XhoI CTCGAG 2 cut(s) 2226, 3742
XmaI CCCGGG 1 cut(s) 1281
XmiI GTMKAC 1 cut(s) 970
XmnI GAANNNNTTC 1 cut(s) 4080
XspI CTAG 6 cut(s) 75, 1572, 1766, 2660, 3251, 3576
ZraI GACGTC 1 cut(s) 3551
Zsp2I ATGCAT 2 cut(s) 778, 2130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.