Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0015071

Physical Location & Seq

Genomic Coordinates Forward (+)

21969185 .. 21969955

Gene Structure 771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTCTTTCTTGTCTCCTACAATTCCGATGCGCCTCCCCCAGGATGACGAGACCGATCAGTCACTCGTCCCTCGCAAAAACTCAGACGACTTGAACAGCAAGATCATGGTCATATCCATCATTTCATTATCCGTCGTTGTTTTGCTAGTAATCTTGCTTCATACCTACGCAAGGTGTGTCCTCCAACGCCAGGCGCTTCGCCGAGCTTCCATGCGTCATCATTTGGGGTCAACCATGGCTCATGTCCACTCCATTATTGAGCTGCCCAAAATGGGACTCGAGCCCTCCGTCATTGCCGCCTTGCCCATGTTCGTGTTCAGACGTGCGGAGGGCCAAGATGGCGGGGATGACAACGCAATAGAGTGCGCTGTGTGTTTGAGCATGTTAGAGGATGAAGAAATGGCACGGTTGCTTCCAAATTGCAAGCACAGTTTCCATGCAGAGTGCATCGACAAGTGGCTAAATTCCCATACTACCTGCCCCATTTGCCGGACAGAGGCGAAGCCGCGTCTGCATCTCGAGCCACGAGAGGGTCCCGCGGCCGGGATGCCTACGGCTCCGCCGTTAGAGCATGTGAACTCTGTGTTGTCATCATCATGTATGGAAGGGACATCAGATGGTGCTCAATCCAGCTCAGCTGGTGCTAAAGTGAATGCTTCATCGGTTTCCAGGTTGAGTTCTTTCAGAAGAATGATTAGCAGGGACAGATCTTCAAGACGTATTCAATCTTGCGGACAAGAGGATGGTATAGAAGATTTAGAGAGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

257

Amino Acids

28.23

Weight (kDa)

6.36

Isoelectric Point (pI)

70.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	121 - 164	7.6e-14	Ring finger domain
zf-C3HC4_2	PF13923	121 - 163	2.1e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	121 - 150	1.6e-09	RING-like zinc finger
zf-RING_5	PF14634	121 - 165	2.1e-06	zinc-RING finger domain
zf-C3HC4	PF00097	122 - 163	1.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	122 - 161	5e-06	RING-type zinc-finger
zf-rbx1	PF12678	123 - 164	5.2e-10	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	136 - 166	3.1e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42350 AT2G42360
fragaria_vesca	FvH4_6g27024
malus_domestica	MD09G1240700.v1.1 MD17G1233600.v1.1
prunus_persica	Prupe.3G125000_v2.0.a1
pyrus_communis	pycom09g15940 pycom17g23670
rosa_chinensis	RchiOBHm_Chr2g0128891
rosa_laevigata	RLG00000019039
rosa_rugosa	Rorug02G0282200
rosa_samantha	Rh2AG334800 Rh2BG342800 Rh2CG321800 Rh2DG359400
rosa_wichuraiana	Rw2G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	58
Acc36I	ACCTGC	1 cut(s)	485
AccII	CGCG	2 cut(s)	508, 539
AciI	CCGC	8 cut(s)	297, 326, 342, 506, 537, 539, 560, 732
AcoI	YGGCCR	1 cut(s)	540
AcsI	RAATTY	1 cut(s)	463
AfiI	CCNNNNNNNGG	9 cut(s)	40, 171, 190, 272, 489, 496, 530, 542, 543
AgsI	TTSAA	3 cut(s)	94, 714, 725
AjiI	CACGTC	1 cut(s)	323
AjnI	CCWGG	3 cut(s)	39, 189, 668
AluBI	AGCT	4 cut(s)	206, 262, 633, 638
AluI	AGCT	4 cut(s)	206, 262, 633, 638
Alw21I	GWGCWC	1 cut(s)	625
Alw26I	GTCTC	2 cut(s)	18, 44
Ama87I	CYCGRG	2 cut(s)	278, 518
AoxI	GGCC	2 cut(s)	331, 540
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	1 cut(s)	463
AspLEI	GCGC	3 cut(s)	33, 196, 368
AspS9I	GGNCC	2 cut(s)	331, 533
AsuC2I	CCSGG	1 cut(s)	544
AvaI	CYCGRG	2 cut(s)	278, 518
AvaII	GGWCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	285
BarI	GAAGNNNNNNTAC	2 cut(s)	141, 173
BauI	CACGAG	1 cut(s)	525
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	4 cut(s)	125, 332, 611, 737
BceAI	ACGGC	2 cut(s)	547, 570
BciT130I	CCWGG	3 cut(s)	41, 191, 670
BcnI	CCSGG	1 cut(s)	544
BcoDI	GTCTC	2 cut(s)	18, 44
BfaI	CTAG	1 cut(s)	146
BfoI	RGCGCY	1 cut(s)	197
BfuAI	ACCTGC	1 cut(s)	485
BglI	GCCNNNNNGGC	1 cut(s)	339
BglII	AGATCT	1 cut(s)	707
BisI	GCNGC	4 cut(s)	263, 297, 506, 540
BlpI	GCTNAGC	1 cut(s)	634
BlsI	GCNGC	4 cut(s)	264, 298, 507, 541
Bme1390I	CCNGG	4 cut(s)	41, 191, 544, 670
Bme18I	GGWCC	1 cut(s)	533
BmeT110I	CYCGRG	2 cut(s)	278, 518
BmgBI	CACGTC	1 cut(s)	323
BmgT120I	GGNCC	2 cut(s)	331, 533
BmiI	GGNNCC	3 cut(s)	534, 535, 558
BmrFI	CCNGG	4 cut(s)	41, 191, 544, 670
BmsI	GCATC	4 cut(s)	18, 456, 523, 537
Bpu1102I	GCTNAGC	1 cut(s)	634
BpuMI	CCSGG	1 cut(s)	544
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	3 cut(s)	39, 234, 537
Bsc4I	CCNNNNNNNGG	9 cut(s)	40, 171, 190, 272, 489, 496, 530, 542, 543
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	3 cut(s)	41, 191, 670
BseDI	CCNNGG	3 cut(s)	39, 234, 537
BseGI	GGATG	5 cut(s)	49, 352, 397, 552, 748
BseLI	CCNNNNNNNGG	9 cut(s)	40, 171, 190, 272, 489, 496, 530, 542, 543
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	2 cut(s)	96, 648
BseX3I	CGGCCG	1 cut(s)	540
BseXI	GCAGC	1 cut(s)	249
Bsh1236I	CGCG	2 cut(s)	508, 539
Bsh1285I	CGRYCG	1 cut(s)	543
BshFI	GGCC	2 cut(s)	333, 542
BsiEI	CGRYCG	1 cut(s)	543
BsiHKAI	GWGCWC	1 cut(s)	625
BsiHKCI	CYCGRG	2 cut(s)	278, 518
BsiSI	CCGG	2 cut(s)	490, 543
BslFI	GGGAC	5 cut(s)	53, 288, 519, 622, 716
BslI	CCNNNNNNNGG	9 cut(s)	40, 171, 190, 272, 489, 496, 530, 542, 543
BsmAI	GTCTC	2 cut(s)	18, 44
BsmFI	GGGAC	5 cut(s)	53, 288, 519, 622, 716
BsmI	GAATGC	1 cut(s)	658
BsnI	GGCC	2 cut(s)	333, 542
Bso31I	GGTCTC	1 cut(s)	44
BsoBI	CYCGRG	2 cut(s)	278, 518
Bsp1286I	GDGCHC	2 cut(s)	285, 625
Bsp143I	GATC	3 cut(s)	55, 102, 707
Bsp1720I	GCTNAGC	1 cut(s)	634
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	8 cut(s)	297, 326, 342, 506, 537, 539, 560, 732
BspANI	GGCC	2 cut(s)	333, 542
BspCNI	CTCAG	2 cut(s)	95, 647
BspFNI	CGCG	2 cut(s)	508, 539
BspLI	GGNNCC	3 cut(s)	534, 535, 558
BspMI	ACCTGC	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	291
BssECI	CCNNGG	3 cut(s)	39, 234, 537
BssMI	GATC	3 cut(s)	55, 102, 707
BssSI	CACGAG	1 cut(s)	525
BssT1I	CCWWGG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	525
Bst2UI	CCWGG	3 cut(s)	41, 191, 670
Bst4CI	ACNGT	2 cut(s)	408, 431
BstC8I	GCNNGC	1 cut(s)	425
BstDEI	CTNAG	2 cut(s)	82, 634
BstDSI	CCRYGG	2 cut(s)	234, 537
BstENI	CCTNNNNNAGG	2 cut(s)	38, 169
BstF5I	GGATG	5 cut(s)	49, 352, 397, 552, 748
BstFNI	CGCG	2 cut(s)	508, 539
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	3 cut(s)	33, 196, 368
BstKTI	GATC	3 cut(s)	58, 105, 710
BstMAI	GTCTC	2 cut(s)	18, 44
BstMBI	GATC	3 cut(s)	55, 102, 707
BstMCI	CGRYCG	1 cut(s)	543
BstMWI	GCNNNNNNNGC	5 cut(s)	339, 486, 511, 520, 568
BstNI	CCWGG	3 cut(s)	41, 191, 670
BstNSI	RCATGY	2 cut(s)	385, 575
BstSCI	CCNGG	4 cut(s)	39, 189, 542, 668
BstUI	CGCG	2 cut(s)	508, 539
BstV1I	GCAGC	1 cut(s)	249
BstX2I	RGATCY	1 cut(s)	707
BstYI	RGATCY	1 cut(s)	707
BstZI	CGGCCG	1 cut(s)	540
BsuRI	GGCC	2 cut(s)	333, 542
BtgI	CCRYGG	2 cut(s)	234, 537
BtrI	CACGTC	1 cut(s)	323
BtsCI	GGATG	5 cut(s)	49, 352, 397, 552, 748
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	1 cut(s)	425
CfoI	GCGC	3 cut(s)	33, 196, 368
Cfr13I	GGNCC	2 cut(s)	331, 533
Cfr42I	CCGCGG	1 cut(s)	540
CseI	GACGC	2 cut(s)	203, 497
CviAII	CATG	9 cut(s)	106, 211, 235, 242, 307, 382, 437, 572, 597
DdeI	CTNAG	2 cut(s)	82, 634
DpnI	GATC	3 cut(s)	57, 104, 709
DpnII	GATC	3 cut(s)	55, 102, 707
DrdI	GACNNNNNNGTC	1 cut(s)	58
DseDI	GACNNNNNNGTC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	540
EagI	CGGCCG	1 cut(s)	540
EciI	GGCGGA	1 cut(s)	549
EclXI	CGGCCG	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	533
Eco52I	CGGCCG	1 cut(s)	540
Eco88I	CYCGRG	2 cut(s)	278, 518
EcoNI	CCTNNNNNAGG	2 cut(s)	38, 169
EcoO109I	RGGNCCY	1 cut(s)	533
EcoRII	CCWGG	3 cut(s)	39, 189, 668
EcoT14I	CCWWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	9 cut(s)	109, 214, 238, 245, 310, 385, 440, 575, 600
FaqI	GGGAC	5 cut(s)	53, 288, 519, 622, 716
FatI	CATG	9 cut(s)	105, 210, 234, 241, 306, 381, 436, 571, 596
FauI	CCCGC	2 cut(s)	335, 544
Fnu4HI	GCNGC	4 cut(s)	263, 297, 506, 540
FokI	GGATG	5 cut(s)	56, 359, 404, 559, 755
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	4 cut(s)	263, 297, 506, 540
FspBI	CTAG	1 cut(s)	146
GlaI	GCGC	3 cut(s)	32, 195, 367
GluI	GCNGC	4 cut(s)	263, 297, 506, 540
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	2 cut(s)	333, 542
HapII	CCGG	2 cut(s)	490, 543
HgaI	GACGC	2 cut(s)	203, 497
HhaI	GCGC	3 cut(s)	33, 196, 368
Hin1II	CATG	9 cut(s)	109, 214, 238, 245, 310, 385, 440, 575, 600
Hin6I	GCGC	3 cut(s)	31, 194, 366
HinP1I	GCGC	3 cut(s)	31, 194, 366
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	276
HpaII	CCGG	2 cut(s)	490, 543
Hpy166II	GTNNAC	3 cut(s)	231, 247, 577
Hpy188I	TCNGA	5 cut(s)	27, 85, 320, 616, 686
Hpy188III	TCNNGA	2 cut(s)	518, 714
Hpy8I	GTNNAC	3 cut(s)	231, 247, 577
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	599
HpyCH4III	ACNGT	2 cut(s)	408, 431
HpyCH4IV	ACGT	2 cut(s)	322, 718
HpyCH4V	TGCA	4 cut(s)	423, 440, 447, 514
HpyF10VI	GCNNNNNNNGC	5 cut(s)	339, 486, 511, 520, 568
HpyF3I	CTNAG	2 cut(s)	82, 634
HpySE526I	ACGT	2 cut(s)	322, 718
Hsp92II	CATG	9 cut(s)	109, 214, 238, 245, 310, 385, 440, 575, 600
HspAI	GCGC	3 cut(s)	31, 194, 366
KflI	GGGWCCC	1 cut(s)	533
KspI	CCGCGG	1 cut(s)	540
Kzo9I	GATC	3 cut(s)	55, 102, 707
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	4 cut(s)	18, 456, 523, 537
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	2 cut(s)	322, 718
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	3 cut(s)	57, 104, 709
MboI	GATC	3 cut(s)	55, 102, 707
MboII	GAAGA	4 cut(s)	407, 699, 702, 764
MflI	RGATCY	1 cut(s)	707
MhlI	GDGCHC	2 cut(s)	285, 625
MluCI	AATT	3 cut(s)	21, 418, 463
MlyI	GAGTC	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	208
MslI	CAYNNNNRTG	2 cut(s)	311, 595
MspA1I	CMGCKG	2 cut(s)	539, 638
MspI	CCGG	2 cut(s)	490, 543
MspR9I	CCNGG	4 cut(s)	41, 191, 544, 670
Mva1269I	GAATGC	1 cut(s)	658
MvaI	CCWGG	3 cut(s)	41, 191, 670
MvnI	CGCG	2 cut(s)	508, 539
MwoI	GCNNNNNNNGC	5 cut(s)	339, 486, 511, 520, 568
NciI	CCSGG	1 cut(s)	544
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	3 cut(s)	55, 102, 707
NlaIII	CATG	9 cut(s)	109, 214, 238, 245, 310, 385, 440, 575, 600
NlaIV	GGNNCC	3 cut(s)	534, 535, 558
NmeAIII	GCCGAG	1 cut(s)	227
NmuCI	GTSAC	1 cut(s)	60
NspI	RCATGY	2 cut(s)	385, 575
PaeR7I	CTCGAG	2 cut(s)	278, 518
PcsI	WCGNNNNNNNCGW	2 cut(s)	285, 560
PctI	GAATGC	1 cut(s)	658
PkrI	GCNGC	4 cut(s)	264, 298, 507, 541
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PpuMI	RGGWCCY	1 cut(s)	533
Psp5II	RGGWCCY	1 cut(s)	533
Psp6I	CCWGG	3 cut(s)	39, 189, 668
PspGI	CCWGG	3 cut(s)	39, 189, 668
PspN4I	GGNNCC	3 cut(s)	534, 535, 558
PspPI	GGNCC	2 cut(s)	331, 533
PspPPI	RGGWCCY	1 cut(s)	533
PspXI	VCTCGAGB	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	707
PvuII	CAGCTG	1 cut(s)	638
RseI	CAYNNNNRTG	2 cut(s)	311, 595
SacII	CCGCGG	1 cut(s)	540
SatI	GCNGC	4 cut(s)	263, 297, 506, 540
Sau3AI	GATC	3 cut(s)	55, 102, 707
Sau96I	GGNCC	2 cut(s)	331, 533
SchI	GAGTC	1 cut(s)	270
ScrFI	CCNGG	4 cut(s)	41, 191, 544, 670
SduI	GDGCHC	2 cut(s)	285, 625
SfaNI	GCATC	4 cut(s)	18, 456, 523, 537
Sfr274I	CTCGAG	2 cut(s)	278, 518
Sfr303I	CCGCGG	1 cut(s)	540
SgrBI	CCGCGG	1 cut(s)	540
SinI	GGWCC	1 cut(s)	533
SlaI	CTCGAG	2 cut(s)	278, 518
SmiMI	CAYNNNNRTG	2 cut(s)	311, 595
SmlI	CTYRAG	2 cut(s)	278, 518
SmoI	CTYRAG	2 cut(s)	278, 518
Sse9I	AATT	3 cut(s)	21, 418, 463
SsiI	CCGC	8 cut(s)	297, 326, 342, 506, 537, 539, 560, 732
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	4 cut(s)	39, 189, 542, 668
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	408, 431
TaiI	ACGT	2 cut(s)	325, 721
TaqI	TCGA	3 cut(s)	279, 450, 519
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	3 cut(s)	21, 418, 463
TauI	GCSGC	3 cut(s)	299, 508, 542
TseFI	GTSAC	1 cut(s)	60
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	4 cut(s)	114, 149, 408, 648
TspGWI	ACGGA	2 cut(s)	121, 277
VpaK11BI	GGWCC	1 cut(s)	533
XagI	CCTNNNNNAGG	2 cut(s)	38, 169
XapI	RAATTY	1 cut(s)	463
XceI	RCATGY	2 cut(s)	385, 575
XhoI	CTCGAG	2 cut(s)	278, 518
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.