pycom17g24900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0016547
Physical Location & Seq
Reverse (-)
23122615 .. 23123109
495 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGGCGACACTGCAGAAATTCAAGCTCTTAGCGACTCAATGCGCCGTCGCCGGAAGCCCAACTCGAAGCCCATCGGCCAGCCCAGTCATCCACCTCCGCCGCCGCAAGACGCTAAGAATGTTCCTCACCCGCCAGGATCGCCGCCGATTGCCTCGGCAAACCAATTCCTCTGAATCTCCACCCATTGACGGTGACAAACGCGACGGTGATTCGCCGCAGAAGAGCAAGGAGGTCGCTCGAGTTCGGCGCAAGCTGAAGGACCTCTTCGTGTCGTCGCCGCCGTTCGAAGATAGGATTTCGGATAGGAGGAGTGGAGGAATTGGGGACGAAGTAGAAGGGCGAGGGTTGTTATCGGCAACCGGAAGTGGTGATGGTTCCGGTGAGATTCCGACTCAGCGAGGCGCCGGCTTATCGCTTCGGCCAATAACAGCGTCGTTTCGAAATAGGTTACTGAAACGAGCTTGGCGGCCTGTTCTGGTTACCATCCCCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.14

Weight (kDa)

11.45

Isoelectric Point (pI)

77.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66890 AT5G16200 AT5G16200
fragaria_vesca FvH4_7g03610
malus_domestica MD17G1247700.v1.1
prunus_persica Prupe.3G146400_v2.0.a1
pyrus_communis pycom09g17100 pycom17g24900
rosa_chinensis RchiOBHm_Chr1g0326241
rosa_laevigata RLG00000030081
rosa_multiflora Rmu_sc0004192.1_g000026
rosa_roxburghii Rroxscaffold_4G00323890
rosa_rugosa Rorug01G0058200
rosa_wichuraiana Rw1G006010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 401
AccII CGCG 1 cut(s) 201
AciI CCGC 8 cut(s) 97, 100, 103, 130, 142, 215, 278, 466
AclWI GGATC 1 cut(s) 144
AcoI YGGCCR 2 cut(s) 75, 419
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 275
AcyI GRCGYC 1 cut(s) 402
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 22
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 3 cut(s) 25, 253, 461
AluI AGCT 3 cut(s) 25, 253, 461
AlwI GGATC 1 cut(s) 144
Ama87I CYCGRG 2 cut(s) 237, 488
AoxI GGCC 3 cut(s) 75, 419, 467
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 3 cut(s) 44, 249, 404
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 5 cut(s) 118, 203, 218, 380, 392
AsuII TTCGAA 2 cut(s) 285, 439
AvaI CYCGRG 2 cut(s) 237, 488
AvaII GGWCC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 401
BccI CCATC 3 cut(s) 79, 365, 491
BceAI ACGGC 2 cut(s) 29, 265
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BciT130I CCWGG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 11
BfoI RGCGCY 1 cut(s) 405
BisI GCNGC 6 cut(s) 100, 103, 142, 215, 278, 467
BlsI GCNGC 6 cut(s) 101, 104, 143, 216, 279, 468
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 259
BmeT110I CYCGRG 2 cut(s) 237, 488
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 2 cut(s) 376, 403
BmrFI CCNGG 1 cut(s) 134
BmrI ACTGGG 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 77
Bpu14I TTCGAA 2 cut(s) 285, 439
BsaHI GRCGYC 1 cut(s) 402
BsaJI CCNNGG 1 cut(s) 152
BsaWI WCCGGW 2 cut(s) 359, 377
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse118I RCCGGY 1 cut(s) 404
Bse1I ACTGG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 152
BseGI GGATG 2 cut(s) 87, 483
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 322
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 3 cut(s) 77, 421, 469
BshNI GGYRCC 1 cut(s) 401
BsiHKCI CYCGRG 2 cut(s) 237, 488
BsiSI CCGG 4 cut(s) 51, 360, 378, 405
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 338
BsnI GGCC 3 cut(s) 77, 421, 469
BsoBI CYCGRG 2 cut(s) 237, 488
Bsp119I TTCGAA 2 cut(s) 285, 439
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 8 cut(s) 97, 100, 103, 130, 142, 215, 278, 466
BspANI GGCC 3 cut(s) 77, 421, 469
BspCNI CTCAG 1 cut(s) 406
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 376, 403
BspMAI CTGCAG 1 cut(s) 15
BspPI GGATC 1 cut(s) 144
BspQI GCTCTTC 1 cut(s) 215
BspT104I TTCGAA 2 cut(s) 285, 439
BspT107I GGYRCC 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 404
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 404
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 2 cut(s) 191, 206
Bst6I CTCTTC 2 cut(s) 215, 269
BstACI GRCGYC 1 cut(s) 402
BstBI TTCGAA 2 cut(s) 285, 439
BstC8I GCNNGC 3 cut(s) 79, 251, 406
BstDEI CTNAG 3 cut(s) 28, 113, 393
BstEII GGTNACC 1 cut(s) 478
BstF5I GGATG 2 cut(s) 87, 483
BstFNI CGCG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 405
BstHHI GCGC 3 cut(s) 44, 249, 404
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 134
BstPI GGTNACC 1 cut(s) 478
BstSCI CCNGG 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 11
BstUI CGCG 1 cut(s) 201
BsuRI GGCC 3 cut(s) 77, 421, 469
BtsCI GGATG 2 cut(s) 87, 483
BtsI GCAGTG 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 8
Cac8I GCNNGC 3 cut(s) 79, 251, 406
CfoI GCGC 3 cut(s) 44, 249, 404
Cfr10I RCCGGY 1 cut(s) 404
Cfr13I GGNCC 1 cut(s) 259
CseI GACGC 2 cut(s) 118, 420
DdeI CTNAG 3 cut(s) 28, 113, 393
DinI GGCGCC 1 cut(s) 403
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
EaeI YGGCCR 2 cut(s) 75, 419
Eam1104I CTCTTC 2 cut(s) 215, 269
EarI CTCTTC 2 cut(s) 215, 269
EciI GGCGGA 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 275
Eco88I CYCGRG 2 cut(s) 237, 488
Eco91I GGTNACC 1 cut(s) 478
EcoO109I RGGNCCY 1 cut(s) 259
EcoO65I GGTNACC 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 132
EgeI GGCGCC 1 cut(s) 403
EheI GGCGCC 1 cut(s) 403
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 1 cut(s) 338
FauI CCCGC 1 cut(s) 137
Fnu4HI GCNGC 6 cut(s) 100, 103, 142, 215, 278, 467
FokI GGATG 2 cut(s) 74, 470
Fsp4HI GCNGC 6 cut(s) 100, 103, 142, 215, 278, 467
GlaI GCGC 3 cut(s) 43, 248, 403
GluI GCNGC 6 cut(s) 100, 103, 142, 215, 278, 467
HaeII RGCGCY 1 cut(s) 405
HaeIII GGCC 3 cut(s) 77, 421, 469
HapII CCGG 4 cut(s) 51, 360, 378, 405
HgaI GACGC 2 cut(s) 118, 420
HhaI GCGC 3 cut(s) 44, 249, 404
Hin1I GRCGYC 1 cut(s) 402
Hin6I GCGC 3 cut(s) 42, 247, 402
HinP1I GCGC 3 cut(s) 42, 247, 402
HinfI GANTC 5 cut(s) 34, 173, 209, 385, 391
HpaII CCGG 4 cut(s) 51, 360, 378, 405
HphI GGTGA 5 cut(s) 118, 203, 218, 380, 392
Hpy188I TCNGA 3 cut(s) 172, 301, 390
Hpy99I CGWCG 4 cut(s) 50, 206, 277, 436
HpyAV CCTTC 2 cut(s) 250, 329
HpyCH4III ACNGT 2 cut(s) 191, 206
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 3 cut(s) 28, 113, 393
Hsp92I GRCGYC 1 cut(s) 402
HspAI GCGC 3 cut(s) 42, 247, 402
KasI GGCGCC 1 cut(s) 401
KroI GCCGGC 1 cut(s) 404
KroNI GCCGGC 1 cut(s) 406
Kzo9I GATC 1 cut(s) 136
LguI GCTCTTC 1 cut(s) 215
MaeIII GTNAC 3 cut(s) 191, 447, 478
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 3 cut(s) 232, 256, 299
MluCI AATT 3 cut(s) 17, 163, 318
Mly113I GGCGCC 1 cut(s) 402
MlyI GAGTC 2 cut(s) 28, 385
MmeI TCCRAC 1 cut(s) 413
MroNI GCCGGC 1 cut(s) 404
MspI CCGG 4 cut(s) 51, 360, 378, 405
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 138
NaeI GCCGGC 1 cut(s) 406
NarI GGCGCC 1 cut(s) 402
NdeII GATC 1 cut(s) 136
NgoMIV GCCGGC 1 cut(s) 404
NlaIV GGNNCC 2 cut(s) 376, 403
NmeAIII GCCGAG 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 191
NspV TTCGAA 2 cut(s) 285, 439
PaeR7I CTCGAG 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 215
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PdiI GCCGGC 1 cut(s) 406
PfeI GAWTC 3 cut(s) 173, 209, 385
PkrI GCNGC 6 cut(s) 101, 104, 143, 216, 279, 468
PleI GAGTC 2 cut(s) 28, 385
PluTI GGCGCC 1 cut(s) 405
PpsI GAGTC 2 cut(s) 28, 385
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 132
PspEI GGTNACC 1 cut(s) 478
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 376, 403
PspPI GGNCC 1 cut(s) 259
PspPPI RGGWCCY 1 cut(s) 259
PspXI VCTCGAGB 1 cut(s) 237
PstI CTGCAG 1 cut(s) 15
SapI GCTCTTC 1 cut(s) 215
SatI GCNGC 6 cut(s) 100, 103, 142, 215, 278, 467
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 1 cut(s) 259
SchI GAGTC 2 cut(s) 28, 385
ScrFI CCNGG 1 cut(s) 134
SetI ASST 7 cut(s) 27, 96, 234, 255, 264, 449, 463
SfcI CTRYAG 1 cut(s) 11
SfoI GGCGCC 1 cut(s) 403
Sfr274I CTCGAG 1 cut(s) 237
SfuI TTCGAA 2 cut(s) 285, 439
SinI GGWCC 1 cut(s) 259
SlaI CTCGAG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
Sse9I AATT 3 cut(s) 17, 163, 318
SsiI CCGC 8 cut(s) 97, 100, 103, 130, 142, 215, 278, 466
SspDI GGCGCC 1 cut(s) 401
StyD4I CCNGG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 191, 206
TaqI TCGA 4 cut(s) 64, 238, 285, 439
TasI AATT 3 cut(s) 17, 163, 318
TauI GCSGC 6 cut(s) 102, 105, 144, 217, 280, 469
TfiI GAWTC 3 cut(s) 173, 209, 385
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 191
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 1 cut(s) 17
XhoI CTCGAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.