pycom17g26610

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0010750
Physical Location & Seq
Forward (+)
24923719 .. 24925214
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 378 bp
ATGCTGCTGCAGCTTGTATTTGCAGGGTGGTGTGAAGACGTTATTTTGGGGATGGAGGACGGGAAAGAGCAACGGGTGGATGAGGGGTCTGAAAAATCTTCCCCAGAGGAGGAGGAAGTTATAAAGAAAAAGTATGGTGGAATCATTCCAAAAAAACCACCACTAATTTCAAAGGACCATGAACGTGCTTATTTTGATTCTGCTGACTGGGCACTTGGAAAGCAAGGTGTTGAAAAGCCAAAAGGACCACTTGAAGCCCTTCGGCCAAAGTTACAGCCCACACAGCAGCAAACACGATACAGAAAGTCTCCTTGTGCTCCGGCAGATGGTGAAGATGAAGGAAGTCCCGCTTCTGAGGATACAACTGCCAACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

126

Amino Acids

13.86

Weight (kDa)

4.86

Isoelectric Point (pI)

54.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 33 - 103 1.1e-23 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64130
fragaria_vesca FvH4_6g27410
malus_domestica MD09G1236900.v1.1 MD17G1267000.v1.1
prunus_persica Prupe.3G117800_v2.0.a1 Prupe.3G117800_v2.0.a1
pyrus_communis pycom09g15550 pycom17g26610
rosa_chinensis RchiOBHm_Chr2g0128381 RchiOBHm_Chr2g0129711
rosa_laevigata RLG00000019100
rosa_multiflora Rmu_sc0001433.1_g000039
rosa_roxburghii Rroxscaffold_2G00114340
rosa_rugosa Rorug02G0289100 Rorug02G0289200
rosa_samantha Rh2AG340000 Rh2BG348600 Rh2CG327600 Rh2DG366900
rosa_wichuraiana Rw2G027820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 122
AciI CCGC 1 cut(s) 348
AcoI YGGCCR 1 cut(s) 263
AfiI CCNNNNNNNGG 2 cut(s) 109, 326
AgsI TTSAA 3 cut(s) 171, 233, 254
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 312
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 4 cut(s) 4, 7, 10, 286
Asp700I GAANNNNTTC 1 cut(s) 258
AspS9I GGNCC 2 cut(s) 175, 245
AsuHPI GGTGA 1 cut(s) 341
AvaII GGWCC 2 cut(s) 175, 245
BaeGI GKGCMC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 2 cut(s) 22, 298
BccI CCATC 2 cut(s) 46, 320
BciVI GTATCC 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 8
BfuI GTATCC 1 cut(s) 352
BisI GCNGC 4 cut(s) 5, 8, 11, 287
BlsI GCNGC 4 cut(s) 6, 9, 12, 288
Bme18I GGWCC 2 cut(s) 175, 245
BmgT120I GGNCC 2 cut(s) 175, 245
BmrI ACTGGG 1 cut(s) 217
BmuI ACTGGG 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 42
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 326
Bse1I ACTGG 1 cut(s) 212
BseGI GGATG 2 cut(s) 57, 85
BseLI CCNNNNNNNGG 2 cut(s) 109, 326
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 1 cut(s) 212
BseRI GAGGAG 2 cut(s) 122, 125
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 2 cut(s) 22, 298
BshFI GGCC 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 319
BsiSI CCGG 1 cut(s) 320
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 2 cut(s) 109, 326
BsmAI GTCTC 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 1 cut(s) 265
Bsp1286I GDGCHC 2 cut(s) 214, 319
BspACI CCGC 1 cut(s) 348
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 346
BspMAI CTGCAG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 354
BstF5I GGATG 2 cut(s) 57, 85
BstMAI GTCTC 1 cut(s) 312
BstMWI GCNNNNNNNGC 3 cut(s) 10, 209, 283
BstSFI CTRYAG 1 cut(s) 8
BstSLI GKGCMC 1 cut(s) 214
BstV1I GCAGC 2 cut(s) 22, 298
BstV2I GAAGAC 1 cut(s) 42
BsuI GTATCC 1 cut(s) 352
BsuRI GGCC 1 cut(s) 265
BtsCI GGATG 2 cut(s) 57, 85
Cfr13I GGNCC 2 cut(s) 175, 245
CviAII CATG 1 cut(s) 179
CviJI RGCY 5 cut(s) 13, 238, 257, 265, 277
CviKI_1 RGCY 5 cut(s) 13, 238, 257, 265, 277
DdeI CTNAG 1 cut(s) 354
EaeI YGGCCR 1 cut(s) 263
Eco47I GGWCC 2 cut(s) 175, 245
FaeI CATG 1 cut(s) 182
FaiI YATR 3 cut(s) 122, 135, 180
FalI AAGNNNNNCTT 4 cut(s) 234, 266, 334, 366
FaqI GGGAC 1 cut(s) 330
FatI CATG 1 cut(s) 178
FauI CCCGC 1 cut(s) 355
Fnu4HI GCNGC 4 cut(s) 5, 8, 11, 287
FokI GGATG 2 cut(s) 64, 92
Fsp4HI GCNGC 4 cut(s) 5, 8, 11, 287
GluI GCNGC 4 cut(s) 5, 8, 11, 287
HaeIII GGCC 1 cut(s) 265
HapII CCGG 1 cut(s) 320
Hin1II CATG 1 cut(s) 182
HinfI GANTC 2 cut(s) 141, 197
HpaII CCGG 1 cut(s) 320
HphI GGTGA 1 cut(s) 341
Hpy188I TCNGA 2 cut(s) 91, 355
HpyAV CCTTC 2 cut(s) 269, 332
HpyCH4IV ACGT 2 cut(s) 39, 184
HpyCH4V TGCA 2 cut(s) 10, 23
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 209, 283
HpyF3I CTNAG 1 cut(s) 354
HpySE526I ACGT 2 cut(s) 39, 184
Hsp92II CATG 1 cut(s) 182
LmnI GCTCC 1 cut(s) 322
LpnPI CCDG 4 cut(s) 9, 117, 193, 333
Lsp1109I GCAGC 2 cut(s) 22, 298
MaeII ACGT 2 cut(s) 39, 184
MaeIII GTNAC 1 cut(s) 270
MboII GAAGA 3 cut(s) 47, 90, 344
MhlI GDGCHC 2 cut(s) 214, 319
MluCI AATT 1 cut(s) 165
MnlI CCTC 6 cut(s) 49, 76, 100, 103, 106, 349
MroXI GAANNNNTTC 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 183
MspI CCGG 1 cut(s) 320
MwoI GCNNNNNNNGC 3 cut(s) 10, 209, 283
NlaIII CATG 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 2 cut(s) 141, 197
PkrI GCNGC 4 cut(s) 6, 9, 12, 288
PsiI TTATAA 1 cut(s) 122
PspPI GGNCC 2 cut(s) 175, 245
PstI CTGCAG 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 183
SatI GCNGC 4 cut(s) 5, 8, 11, 287
Sau96I GGNCC 2 cut(s) 175, 245
SduI GDGCHC 2 cut(s) 214, 319
SetI ASST 4 cut(s) 15, 42, 187, 229
SfcI CTRYAG 1 cut(s) 8
SinI GGWCC 2 cut(s) 175, 245
SmiMI CAYNNNNRTG 1 cut(s) 183
Sse9I AATT 1 cut(s) 165
SsiI CCGC 1 cut(s) 348
TaiI ACGT 2 cut(s) 42, 187
TasI AATT 1 cut(s) 165
TfiI GAWTC 2 cut(s) 141, 197
TseI GCWGC 4 cut(s) 4, 7, 10, 286
TspDTI ATGAA 2 cut(s) 195, 351
VpaK11BI GGWCC 2 cut(s) 175, 245
XmnI GAANNNNTTC 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.