pycom17g28110

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011254
Physical Location & Seq
Reverse (-)
26144945 .. 26146725
1781 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1116 bp
ATGAACAGGAGACGCCATGGTTGGCAGCGCCCTTTCCATCCTCTCCAGATTGTTGGAATCGCAGTTTACAGTTTTCTTGTGGTGGTCTTCTACACATTCCTCGGACTTTTTCTCGGAAATAGAATCGCCGAAATCACGGTTACCACCGTCTTTTCCTTTGTGGCTGTTTCGGTCATGTTTCTCTTCATAAGATGCACAGCCACTGACCCATCTGACAGAACCAGCCTTAAGAAGAACAAGAAGAAACCTAAAGGTGGCAAAGGCCTTCCGAAGCTCAACTACAGCTTCCTTCTCGGGCAGATTGTAGTCACCTTCTTTAGGAGGGTGGAGAGGAAGATCCTTCGGACTTTTATAAGGAGGAGGTATCTCGATCCATGGAAGACCGCCGCTCAGTTGGATCCCTTGCTCCCGTTTCCCTTTGTCCTCATGAAGGAAGACGCTGTCTCTCCTGATTTAAGGGAAGACGACATCTCTTTTTGCGCACTCTGCGACTTTGAGGTGAAAAAACACAGTAAGCACTGCAGGACCTGCAACCGTTGCGTTGATGGATTCGACCATCACTGCAGGTGGTTAAACAACTGCATCGGGAAAAAGAACTACACCACATTCATTCTCCTTATGATTTTCGTTTTGTTATTGCTAACCATAGAAGGAGCAACTGCAATTGCCATATTCGTCAGGTGCTTCTCAGATAAAAATGGAATGGAGCAGGAACTGAAGAGGAAGCTCTACGTGGAATTCCCAAGAAGCGTTCTTGCTACAATATCGGTTTTGCTGACTTTAATGATAGCTTATGGTTCAGCAGCAATGGGACAGCTTTTTTTCTTTCATGTGGTTCTCATACGGAAGGGAATGAAAACATATGACTATATCCTGGCAATGAAAGAGGAGAGCCAACCCATAGAAATGGATCCATTCGATGACGATTCAGATTTCTCCTCGGATGTGAGTAGTGATTTTGATTCACCTGAAAACCCCTCATTCATATCACGGTTTATATGCAGAGGGAGCGGTGCAACTCAGGTAAAGTCCATATCTTATACGGCATACATACAGTCTTCCCTAGTTTTGCATCTTCAGGATTTCAGAAGGCGTACAAGTCTATTTGCCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

372

Amino Acids

42.71

Weight (kDa)

9.4

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 155 - 291 2.2e-31 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01730
fragaria_vesca FvH4_1g26210 FvH4_1g26210
malus_domestica MD09G1290600.v1.1 MD17G1285300.v1.1
prunus_persica Prupe.3G002400_v2.0.a1 Prupe.3G002400_v2.0.a1
pyrus_communis pycom09g19820 pycom17g28110
rosa_chinensis RchiOBHm_Chr3g0485751
rosa_laevigata RLG00000023128
rosa_multiflora Rmu_sc0003005.1_g000002
rosa_roxburghii Rroxscaffold_6G00396350 Rroxscaffold_6G00396370
rosa_rugosa Rorug03G0221100
rosa_samantha Rh3AG270400 Rh3BG305900 Rh3CG304300 Rh3DG300400
rosa_wichuraiana Rw3G024080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 353
AarI CACCTGC 1 cut(s) 555
Acc16I TGCGCA 1 cut(s) 481
Acc36I ACCTGC 2 cut(s) 536, 555
AccBSI CCGCTC 2 cut(s) 389, 1011
AciI CCGC 3 cut(s) 384, 387, 1011
AclWI GGATC 6 cut(s) 331, 365, 392, 405, 905, 918
AcsI RAATTY 1 cut(s) 737
AcuI CTGAAG 2 cut(s) 737, 1061
AcyI GRCGYC 1 cut(s) 13
AfaI GTAC 1 cut(s) 1096
AfiI CCNNNNNNNGG 3 cut(s) 254, 318, 430
AflII CTTAAG 1 cut(s) 227
AjnI CCWGG 1 cut(s) 873
AluBI AGCT 5 cut(s) 274, 285, 727, 791, 817
AluI AGCT 5 cut(s) 274, 285, 727, 791, 817
Alw26I GTCTC 2 cut(s) 4, 448
AlwI GGATC 6 cut(s) 331, 365, 392, 405, 905, 918
AlwNI CAGNNNCTG 3 cut(s) 203, 528, 715
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 2 cut(s) 25, 803
ApoI RAATTY 1 cut(s) 737
AspLEI GCGC 2 cut(s) 30, 482
AspS9I GGNCC 1 cut(s) 525
AsuHPI GGTGA 3 cut(s) 301, 511, 957
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 1 cut(s) 525
BamHI GGATCC 2 cut(s) 397, 910
BarI GAAGNNNNNNTAC 2 cut(s) 263, 295
BbsI GAAGAC 5 cut(s) 79, 386, 441, 468, 1050
BbvI GCAGC 2 cut(s) 37, 815
BccI CCATC 4 cut(s) 45, 217, 539, 564
BceAI ACGGC 1 cut(s) 1059
BciT130I CCWGG 1 cut(s) 875
BcoDI GTCTC 2 cut(s) 4, 448
BfaI CTAG 1 cut(s) 1064
BfmI CTRYAG 3 cut(s) 280, 520, 562
BfoI RGCGCY 1 cut(s) 31
BfrI CTTAAG 1 cut(s) 227
BfuAI ACCTGC 2 cut(s) 536, 555
BisI GCNGC 3 cut(s) 26, 387, 804
BlsI GCNGC 3 cut(s) 27, 388, 805
Bme1390I CCNGG 1 cut(s) 875
Bme18I GGWCC 1 cut(s) 525
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 525
BmiI GGNNCC 2 cut(s) 399, 912
BmrFI CCNGG 1 cut(s) 875
BmsI GCATC 3 cut(s) 182, 591, 1081
BpiI GAAGAC 5 cut(s) 79, 386, 441, 468, 1050
BpmI CTGGAG 1 cut(s) 29
BsaAI YACGTR 1 cut(s) 733
BsaHI GRCGYC 1 cut(s) 13
BsaJI CCNNGG 4 cut(s) 16, 100, 374, 939
Bsc4I CCNNNNNNNGG 3 cut(s) 254, 318, 430
Bse3DI GCAATG 2 cut(s) 813, 885
BseBI CCWGG 1 cut(s) 875
BseDI CCNNGG 4 cut(s) 16, 100, 374, 939
BseGI GGATG 2 cut(s) 37, 949
BseLI CCNNNNNNNGG 3 cut(s) 254, 318, 430
BseMI GCAATG 2 cut(s) 813, 885
BseMII CTCAG 3 cut(s) 404, 702, 1034
BseRI GAGGAG 3 cut(s) 373, 902, 928
BseXI GCAGC 2 cut(s) 37, 815
BshFI GGCC 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 825
BslI CCNNNNNNNGG 3 cut(s) 254, 318, 430
BsmAI GTCTC 2 cut(s) 4, 448
BsmBI CGTCTC 1 cut(s) 4
BsmFI GGGAC 1 cut(s) 825
BsnI GGCC 1 cut(s) 264
BsoBI CYCGRG 1 cut(s) 293
Bsp143I GATC 4 cut(s) 336, 370, 397, 910
Bsp19I CCATGG 2 cut(s) 16, 374
BspACI CCGC 3 cut(s) 384, 387, 1011
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 3 cut(s) 403, 701, 1033
BspHI TCATGA 1 cut(s) 426
BspLI GGNNCC 2 cut(s) 399, 912
BspMAI CTGCAG 2 cut(s) 524, 566
BspMI ACCTGC 2 cut(s) 536, 555
BspPI GGATC 6 cut(s) 331, 365, 392, 405, 905, 918
BspTI CTTAAG 1 cut(s) 227
BsrBI CCGCTC 2 cut(s) 389, 1011
BsrDI GCAATG 2 cut(s) 813, 885
BssECI CCNNGG 4 cut(s) 16, 100, 374, 939
BssMI GATC 4 cut(s) 336, 370, 397, 910
BssNI GRCGYC 1 cut(s) 13
BssT1I CCWWGG 2 cut(s) 16, 374
Bst2UI CCWGG 1 cut(s) 875
Bst4CI ACNGT 7 cut(s) 71, 139, 148, 512, 536, 993, 1056
Bst6I CTCTTC 2 cut(s) 188, 713
BstACI GRCGYC 1 cut(s) 13
BstAFI CTTAAG 1 cut(s) 227
BstAPI GCANNNNNTGC 2 cut(s) 528, 537
BstBAI YACGTR 1 cut(s) 733
BstDEI CTNAG 3 cut(s) 390, 688, 1020
BstDSI CCRYGG 2 cut(s) 16, 374
BstEII GGTNACC 1 cut(s) 139
BstENI CCTNNNNNAGG 2 cut(s) 316, 428
BstF5I GGATG 2 cut(s) 37, 949
BstH2I RGCGCY 1 cut(s) 31
BstHHI GCGC 2 cut(s) 30, 482
BstKTI GATC 4 cut(s) 339, 373, 400, 913
BstMAI GTCTC 2 cut(s) 4, 448
BstMBI GATC 4 cut(s) 336, 370, 397, 910
BstMWI GCNNNNNNNGC 4 cut(s) 486, 528, 537, 1008
BstNI CCWGG 1 cut(s) 875
BstPI GGTNACC 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 873
BstSFI CTRYAG 3 cut(s) 280, 520, 562
BstV1I GCAGC 2 cut(s) 37, 815
BstV2I GAAGAC 5 cut(s) 79, 386, 441, 468, 1050
BstX2I RGATCY 3 cut(s) 336, 397, 910
BstXI CCANNNNNNTGG 2 cut(s) 53, 907
BstYI RGATCY 3 cut(s) 336, 397, 910
BsuRI GGCC 1 cut(s) 264
BtgI CCRYGG 2 cut(s) 16, 374
BtsCI GGATG 2 cut(s) 37, 949
BtsI GCAGTG 2 cut(s) 517, 559
BtsIMutI CAGTG 3 cut(s) 201, 517, 559
BveI ACCTGC 2 cut(s) 536, 555
CaiI CAGNNNCTG 3 cut(s) 203, 528, 715
CciI TCATGA 1 cut(s) 426
CfoI GCGC 2 cut(s) 30, 482
Cfr13I GGNCC 1 cut(s) 525
CseI GACGC 2 cut(s) 21, 446
Csp6I GTAC 1 cut(s) 1095
CviAII CATG 6 cut(s) 17, 175, 375, 427, 830, 1113
CviQI GTAC 1 cut(s) 1095
DdeI CTNAG 3 cut(s) 390, 688, 1020
DpnI GATC 4 cut(s) 338, 372, 399, 912
DpnII GATC 4 cut(s) 336, 370, 397, 910
Eam1104I CTCTTC 2 cut(s) 188, 713
EarI CTCTTC 2 cut(s) 188, 713
Eco130I CCWWGG 2 cut(s) 16, 374
Eco147I AGGCCT 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 525
Eco57I CTGAAG 2 cut(s) 737, 1061
Eco88I CYCGRG 1 cut(s) 293
Eco91I GGTNACC 1 cut(s) 139
EcoNI CCTNNNNNAGG 2 cut(s) 316, 428
EcoO109I RGGNCCY 1 cut(s) 525
EcoO65I GGTNACC 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 737
EcoRII CCWGG 1 cut(s) 873
EcoT14I CCWWGG 2 cut(s) 16, 374
ErhI CCWWGG 2 cut(s) 16, 374
Esp3I CGTCTC 1 cut(s) 4
FaeI CATG 6 cut(s) 20, 178, 378, 430, 833, 1116
FaqI GGGAC 1 cut(s) 825
FatI CATG 6 cut(s) 16, 174, 374, 426, 829, 1112
FauNDI CATATG 1 cut(s) 862
Fnu4HI GCNGC 3 cut(s) 26, 387, 804
FokI GGATG 2 cut(s) 24, 956
Fsp4HI GCNGC 3 cut(s) 26, 387, 804
FspBI CTAG 1 cut(s) 1064
FspI TGCGCA 1 cut(s) 481
GlaI GCGC 2 cut(s) 29, 481
GluI GCNGC 3 cut(s) 26, 387, 804
GsuI CTGGAG 1 cut(s) 29
HaeII RGCGCY 1 cut(s) 31
HaeIII GGCC 1 cut(s) 264
HgaI GACGC 2 cut(s) 21, 446
HhaI GCGC 2 cut(s) 30, 482
Hin1I GRCGYC 1 cut(s) 13
Hin1II CATG 6 cut(s) 20, 178, 378, 430, 833, 1116
Hin6I GCGC 2 cut(s) 28, 480
HinP1I GCGC 2 cut(s) 28, 480
HinfI GANTC 5 cut(s) 57, 123, 549, 926, 962
HphI GGTGA 3 cut(s) 301, 511, 957
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 9 cut(s) 104, 116, 214, 270, 345, 691, 931, 943, 1088
Hpy188III TCNNGA 6 cut(s) 46, 368, 427, 449, 586, 1079
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 8 cut(s) 275, 299, 322, 350, 424, 644, 841, 1083
HpyCH4III ACNGT 7 cut(s) 71, 139, 148, 512, 536, 993, 1056
HpyCH4IV ACGT 1 cut(s) 732
HpyCH4V TGCA 9 cut(s) 195, 522, 531, 564, 582, 662, 1002, 1016, 1072
HpyF10VI GCNNNNNNNGC 4 cut(s) 486, 528, 537, 1008
HpyF3I CTNAG 3 cut(s) 390, 688, 1020
HpySE526I ACGT 1 cut(s) 732
Hsp92I GRCGYC 1 cut(s) 13
Hsp92II CATG 6 cut(s) 20, 178, 378, 430, 833, 1116
HspAI GCGC 2 cut(s) 28, 480
Kzo9I GATC 4 cut(s) 336, 370, 397, 910
LmnI GCTCC 4 cut(s) 411, 653, 706, 1008
Lsp1109I GCAGC 2 cut(s) 37, 815
LweI GCATC 3 cut(s) 182, 591, 1081
MaeI CTAG 1 cut(s) 1064
MaeII ACGT 1 cut(s) 732
MaeIII GTNAC 2 cut(s) 139, 307
MalI GATC 4 cut(s) 338, 372, 399, 912
MbiI CCGCTC 2 cut(s) 389, 1011
MboI GATC 4 cut(s) 336, 370, 397, 910
MfeI CAATTG 1 cut(s) 663
MflI RGATCY 3 cut(s) 336, 397, 910
MluCI AATT 2 cut(s) 663, 737
MmeI TCCRAC 2 cut(s) 34, 375
MseI TTAA 4 cut(s) 228, 455, 572, 782
MslI CAYNNNNRTG 1 cut(s) 905
MspCI CTTAAG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 875
MunI CAATTG 1 cut(s) 663
MvaI CCWGG 1 cut(s) 875
MwoI GCNNNNNNNGC 4 cut(s) 486, 528, 537, 1008
NcoI CCATGG 2 cut(s) 16, 374
NdeI CATATG 1 cut(s) 862
NdeII GATC 4 cut(s) 336, 370, 397, 910
NlaIII CATG 6 cut(s) 20, 178, 378, 430, 833, 1116
NlaIV GGNNCC 2 cut(s) 399, 912
NmuCI GTSAC 1 cut(s) 307
NsbI TGCGCA 1 cut(s) 481
PagI TCATGA 1 cut(s) 426
PaqCI CACCTGC 1 cut(s) 555
PceI AGGCCT 1 cut(s) 264
PfeI GAWTC 5 cut(s) 57, 123, 549, 926, 962
PflFI GACNNNGTC 1 cut(s) 440
PkrI GCNGC 3 cut(s) 27, 388, 805
Ppu21I YACGTR 1 cut(s) 733
PpuMI RGGWCCY 1 cut(s) 525
PsiI TTATAA 1 cut(s) 353
Psp5II RGGWCCY 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 873
PspEI GGTNACC 1 cut(s) 139
PspGI CCWGG 1 cut(s) 873
PspN4I GGNNCC 2 cut(s) 399, 912
PspPI GGNCC 1 cut(s) 525
PspPPI RGGWCCY 1 cut(s) 525
PstI CTGCAG 2 cut(s) 524, 566
PstNI CAGNNNCTG 3 cut(s) 203, 528, 715
PsuI RGATCY 3 cut(s) 336, 397, 910
PsyI GACNNNGTC 1 cut(s) 440
RsaI GTAC 1 cut(s) 1096
RsaNI GTAC 1 cut(s) 1095
RseI CAYNNNNRTG 1 cut(s) 905
SaqAI TTAA 4 cut(s) 228, 455, 572, 782
SatI GCNGC 3 cut(s) 26, 387, 804
Sau3AI GATC 4 cut(s) 336, 370, 397, 910
Sau96I GGNCC 1 cut(s) 525
ScrFI CCNGG 1 cut(s) 875
SfaNI GCATC 3 cut(s) 182, 591, 1081
SfcI CTRYAG 3 cut(s) 280, 520, 562
SinI GGWCC 1 cut(s) 525
SmiMI CAYNNNNRTG 1 cut(s) 905
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 2 cut(s) 663, 737
SseBI AGGCCT 1 cut(s) 264
SsiI CCGC 3 cut(s) 384, 387, 1011
SspMI CTAG 1 cut(s) 1064
StuI AGGCCT 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 873
StyI CCWWGG 2 cut(s) 16, 374
TaaI ACNGT 7 cut(s) 71, 139, 148, 512, 536, 993, 1056
TaiI ACGT 1 cut(s) 735
TaqI TCGA 3 cut(s) 369, 552, 918
TaqII GACCGA 1 cut(s) 160
TasI AATT 2 cut(s) 663, 737
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 5 cut(s) 57, 123, 549, 926, 962
Tru1I TTAA 4 cut(s) 228, 455, 572, 782
Tru9I TTAA 4 cut(s) 228, 455, 572, 782
TscAI CASTG 3 cut(s) 208, 524, 566
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 2 cut(s) 25, 803
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 8 cut(s) 17, 175, 443, 598, 818, 869, 896, 973
TspGWI ACGGA 1 cut(s) 859
TspRI CASTG 3 cut(s) 208, 524, 566
Tth111I GACNNNGTC 1 cut(s) 440
Vha464I CTTAAG 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 525
XagI CCTNNNNNAGG 2 cut(s) 316, 428
XapI RAATTY 1 cut(s) 737
XspI CTAG 1 cut(s) 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.