Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_49

Orthogroup ID

OG0007056

Physical Location & Seq

Genomic Coordinates Forward (+)

171943 .. 173683

Gene Structure 1741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGATCGAGCTTGCTGTCATGACCAGCTACAAACGTGCCAAAGAATGGGTCCGCCGCAACGTCACCCGCTACAATTTCAACGGAGGAGTTAACATCAAATATGTAGCAGTTGGGAATGAGCCTTTCCTCACATCGTACAATGGTTCATTCCTGAATGTTACGTTCCCAGCACTTCAGAACATTCAAAATGCCCTTAACGAAGCCGGAGTTGGAGATTCGGTAAAGGCTACTGTGCCCTTAAATGCTGATGTCTACAACTCACCAGAAAACAACCCCGTGCCATCTGCAGGAAGGTTCCGGACTGATATTCTTCAACTAATGACCGATATTGTCCAGTTCCTAGACAAAAATCAAGCGCCTTTCACAATAAACATCTACCCTTTCCTGAGTTTATATGGGAATGACGACTTCCCATTCAACTATGCCTTCTTTGATGGGGATACCAATCCCATTGTTGATACAGGCACTGGGATTCAGTACACCAATGTTTTCGATGCTAATTTTGATACCTTGGTCTCTTCCCTGAAAGCAGTGGGATTTGGGAATATGCCCATTGTGGTTGGGGAGGTGGGATGGCCAACAGACGGGGACAAGAATGCCAATGCAGGTAATGCTTTGAGATTTTATAATGGGCTTCTAACAAGACTTGGAACCAACAGAGGCACCCCACTGCGACCTGGATATATTGAAGTTTACTTGTTTGGACTTATTGATGAGGATGCAAAGAGCATCGCTCCAGGAAGTTTTGAGCGTCACTGGGGAATTTTCGGTTATGATGGACAGCCCAAGTTCCCGGTCGATCTATCTGGTCAGGGTCAGAACAAGTTACTAGTGCCTGCAAAGAATGTGCAGTATCTTTCAAAAAAATGGTGCATGTTTAACCCGAACGCCAAAGATGTGAGCAAACTGGCAGATAACATAAACTATGCTTGCACCTTTTCGGATTGCACGGCATTGGAATATGGTTCTTCTTGCAACAATTTGGATGCAAACGGGAATGCTTCGTATGCGTTTAATATGTACTACCAGGTTCAGAATCAGGATCGATCTGTCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048046 GO:0055044 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

353

Amino Acids

38.94

Weight (kDa)

4.94

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	10 - 267	1.3e-48	Glycosyl hydrolases family 17
X8	PF07983	289 - 349	3.2e-12	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64760 AT1G64760 AT2G19440 AT2G19440 AT3G04010 AT5G18220
fragaria_vesca	FvH4_1g28000
malus_domestica	MD12G1002300.v1.1 MD14G1001800.v1.1
prunus_persica	Prupe.7G002200_v2.0.a1
pyrus_communis	pycom12g00200 pycom49g00140
rosa_chinensis	RchiOBHm_Chr3g0497411
rosa_laevigata	RLG00000022466
rosa_multiflora	Rmu_sc0006392.1_g000005
rosa_roxburghii	Rroxscaffold_6G00388070
rosa_rugosa	Rorug03G0292700 Rorug03G0292800
rosa_samantha	Rh3AG336300 Rh3BG374400 Rh3CG370500 Rh3DG371400 Rh3DG372900 Rh6DG331700
rosa_wichuraiana	Rw3G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
Acc36I	ACCTGC	1 cut(s)	596
AccB1I	GGYRCC	1 cut(s)	662
AccB7I	CCANNNNNTGG	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	252
AccIII	TCCGGA	1 cut(s)	297
AciI	CCGC	3 cut(s)	52, 55, 67
AclWI	GGATC	1 cut(s)	1050
AcoI	YGGCCR	1 cut(s)	575
AcsI	RAATTY	1 cut(s)	762
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	3 cut(s)	137, 479, 1022
AfiI	CCNNNNNNNGG	3 cut(s)	45, 287, 584
AgsI	TTSAA	6 cut(s)	79, 185, 314, 418, 689, 861
AhlI	ACTAGT	1 cut(s)	829
AjnI	CCWGG	3 cut(s)	676, 736, 1026
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
AluBI	AGCT	2 cut(s)	10, 27
AluI	AGCT	2 cut(s)	10, 27
Alw26I	GTCTC	1 cut(s)	520
AlwI	GGATC	1 cut(s)	1050
AlwNI	CAGNNNCTG	1 cut(s)	467
Aor13HI	TCCGGA	1 cut(s)	297
AoxI	GGCC	1 cut(s)	575
ApoI	RAATTY	1 cut(s)	762
ArsI	GACNNNNNNTTYG	2 cut(s)	33, 65
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	794
AsuHPI	GGTGA	2 cut(s)	55, 252
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	237
BaeI	ACNNNNGTAYC	2 cut(s)	498, 531
BalI	TGGCCA	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	662
BccI	CCATC	4 cut(s)	289, 428, 567, 770
BceAI	ACGGC	1 cut(s)	966
BciT130I	CCWGG	3 cut(s)	678, 738, 1028
BciVI	GTATCC	1 cut(s)	433
BcnI	CCSGG	1 cut(s)	794
BcoDI	GTCTC	1 cut(s)	520
BcuI	ACTAGT	1 cut(s)	829
BfaI	CTAG	2 cut(s)	341, 830
BfmI	CTRYAG	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	596
BfuI	GTATCC	1 cut(s)	433
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
Bme1390I	CCNGG	4 cut(s)	678, 738, 794, 1028
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	4 cut(s)	50, 296, 652, 664
BmrFI	CCNGG	4 cut(s)	678, 738, 794, 1028
BmrI	ACTGGG	2 cut(s)	477, 766
BmsI	GCATC	4 cut(s)	484, 709, 738, 976
BmuI	ACTGGG	2 cut(s)	477, 766
BplI	GAGNNNNNCTC	2 cut(s)	718, 750
BpmI	CTGGAG	1 cut(s)	720
BpuMI	CCSGG	1 cut(s)	794
Bsa29I	ATCGAT	1 cut(s)	1045
BsaBI	GATNNNNATC	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	510
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 287, 584
Bse1I	ACTGG	4 cut(s)	334, 472, 761, 912
Bse8I	GATNNNNATC	1 cut(s)	444
BseAI	TCCGGA	1 cut(s)	297
BseBI	CCWGG	3 cut(s)	678, 738, 1028
BseCI	ATCGAT	1 cut(s)	1045
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	3 cut(s)	578, 724, 991
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	3 cut(s)	45, 287, 584
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	4 cut(s)	334, 472, 761, 912
BseRI	GAGGAG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	237
BseYI	CCCAGC	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	869
Bsh1285I	CGRYCG	1 cut(s)	798
BshFI	GGCC	1 cut(s)	577
BshNI	GGYRCC	1 cut(s)	662
BshVI	ATCGAT	1 cut(s)	1045
BsiEI	CGRYCG	1 cut(s)	798
BsiSI	CCGG	3 cut(s)	204, 298, 794
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	3 cut(s)	45, 287, 584
BsmAI	GTCTC	1 cut(s)	520
BsmFI	GGGAC	1 cut(s)	602
BsmI	GAATGC	2 cut(s)	601, 1003
BsnI	GGCC	1 cut(s)	577
Bso31I	GGTCTC	1 cut(s)	520
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp13I	TCCGGA	1 cut(s)	297
Bsp143I	GATC	4 cut(s)	3, 799, 1042, 1046
BspACI	CCGC	3 cut(s)	52, 55, 67
BspANI	GGCC	1 cut(s)	577
BspCNI	CTCAG	1 cut(s)	378
BspDI	ATCGAT	1 cut(s)	1045
BspEI	TCCGGA	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	4 cut(s)	50, 296, 652, 664
BspMAI	CTGCAG	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	596
BspPI	GGATC	1 cut(s)	1050
BspT107I	GGYRCC	1 cut(s)	662
BspTNI	GGTCTC	1 cut(s)	520
BsrI	ACTGG	4 cut(s)	334, 472, 761, 912
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	4 cut(s)	3, 799, 1042, 1046
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	3 cut(s)	678, 738, 1028
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	523
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstC8I	GCNNGC	3 cut(s)	12, 837, 931
BstDEI	CTNAG	1 cut(s)	386
BstF5I	GGATG	3 cut(s)	578, 724, 991
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	4 cut(s)	6, 802, 1045, 1049
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	4 cut(s)	3, 799, 1042, 1046
BstMCI	CGRYCG	1 cut(s)	798
BstMWI	GCNNNNNNNGC	2 cut(s)	611, 1007
BstNI	CCWGG	3 cut(s)	678, 738, 1028
BstNSI	RCATGY	1 cut(s)	877
BstSCI	CCNGG	4 cut(s)	676, 736, 792, 1026
BstSFI	CTRYAG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	237
Bsu15I	ATCGAT	1 cut(s)	1045
BsuI	GTATCC	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	577
BsuTUI	ATCGAT	1 cut(s)	1045
BtgZI	GCGATG	1 cut(s)	715
BtsCI	GGATG	3 cut(s)	578, 724, 991
BtsI	GCAGTG	2 cut(s)	537, 668
BtsIMutI	CAGTG	4 cut(s)	465, 537, 668, 754
BveI	ACCTGC	1 cut(s)	596
Cac8I	GCNNGC	3 cut(s)	12, 837, 931
CaiI	CAGNNNCTG	1 cut(s)	467
CciI	TCATGA	1 cut(s)	18
CfoI	GCGC	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	49
ClaI	ATCGAT	1 cut(s)	1045
CseI	GACGC	1 cut(s)	740
CsiI	ACCWGGT	1 cut(s)	1026
Csp6I	GTAC	3 cut(s)	136, 478, 1021
CviAII	CATG	2 cut(s)	19, 874
CviJI	RGCY	8 cut(s)	10, 27, 121, 203, 227, 577, 634, 784
CviKI_1	RGCY	8 cut(s)	10, 27, 121, 203, 227, 577, 634, 784
CviQI	GTAC	3 cut(s)	136, 478, 1021
DdeI	CTNAG	1 cut(s)	386
DpnI	GATC	4 cut(s)	5, 801, 1044, 1048
DpnII	GATC	4 cut(s)	3, 799, 1042, 1046
EaeI	YGGCCR	1 cut(s)	575
Eam1104I	CTCTTC	1 cut(s)	523
EarI	CTCTTC	1 cut(s)	523
EciI	GGCGGA	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	510
Eco31I	GGTCTC	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	158
EcoRII	CCWGG	3 cut(s)	676, 736, 1026
EcoT14I	CCWWGG	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	2 cut(s)	22, 877
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	2 cut(s)	18, 873
FauI	CCCGC	1 cut(s)	74
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	3 cut(s)	585, 731, 998
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	2 cut(s)	341, 830
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	1 cut(s)	55
GsaI	CCCAGC	1 cut(s)	170
GsuI	CTGGAG	1 cut(s)	720
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	577
HapII	CCGG	3 cut(s)	204, 298, 794
HgaI	GACGC	1 cut(s)	740
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	2 cut(s)	22, 877
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	3 cut(s)	215, 472, 1036
HpaI	GTTAAC	1 cut(s)	91
HpaII	CCGG	3 cut(s)	204, 298, 794
HphI	GGTGA	2 cut(s)	55, 252
Hpy166II	GTNNAC	4 cut(s)	91, 253, 480, 694
Hpy188I	TCNGA	4 cut(s)	177, 819, 943, 1035
Hpy188III	TCNNGA	5 cut(s)	19, 151, 298, 385, 1040
Hpy8I	GTNNAC	4 cut(s)	91, 253, 480, 694
HpyAV	CCTTC	2 cut(s)	285, 436
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	3 cut(s)	34, 60, 161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	611, 1007
HpyF3I	CTNAG	1 cut(s)	386
HpySE526I	ACGT	3 cut(s)	34, 60, 161
Hsp92II	CATG	2 cut(s)	22, 877
HspAI	GCGC	1 cut(s)	356
Kpn2I	TCCGGA	1 cut(s)	297
KspAI	GTTAAC	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	3, 799, 1042, 1046
LmnI	GCTCC	1 cut(s)	739
LweI	GCATC	4 cut(s)	484, 709, 738, 976
MabI	ACCWGGT	1 cut(s)	1026
MaeI	CTAG	2 cut(s)	341, 830
MaeII	ACGT	3 cut(s)	34, 60, 161
MaeIII	GTNAC	4 cut(s)	61, 157, 752, 825
MalI	GATC	4 cut(s)	5, 801, 1044, 1048
MboI	GATC	4 cut(s)	3, 799, 1042, 1046
MboII	GAAGA	3 cut(s)	302, 510, 960
MhlI	GDGCHC	1 cut(s)	237
MlsI	TGGCCA	1 cut(s)	577
MluCI	AATT	4 cut(s)	73, 499, 762, 979
MluNI	TGGCCA	1 cut(s)	577
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	5 cut(s)	77, 137, 559, 653, 709
Mox20I	TGGCCA	1 cut(s)	577
MroI	TCCGGA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	577
MseI	TTAA	5 cut(s)	90, 195, 239, 879, 1014
Msp20I	TGGCCA	1 cut(s)	577
MspI	CCGG	3 cut(s)	204, 298, 794
MspR9I	CCNGG	4 cut(s)	678, 738, 794, 1028
Mva1269I	GAATGC	2 cut(s)	601, 1003
MvaI	CCWGG	3 cut(s)	678, 738, 1028
MwoI	GCNNNNNNNGC	2 cut(s)	611, 1007
NciI	CCSGG	1 cut(s)	794
NdeII	GATC	4 cut(s)	3, 799, 1042, 1046
NlaIII	CATG	2 cut(s)	22, 877
NlaIV	GGNNCC	4 cut(s)	50, 296, 652, 664
NmuCI	GTSAC	2 cut(s)	61, 752
NspI	RCATGY	1 cut(s)	877
PagI	TCATGA	1 cut(s)	18
PctI	GAATGC	2 cut(s)	601, 1003
PfeI	GAWTC	3 cut(s)	215, 472, 1036
PflMI	CCANNNNNTGG	1 cut(s)	45
PfoI	TCCNGGA	1 cut(s)	736
PkrI	GCNGC	1 cut(s)	56
PsiI	TTATAA	1 cut(s)	627
Psp6I	CCWGG	3 cut(s)	676, 736, 1026
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	3 cut(s)	676, 736, 1026
PspN4I	GGNNCC	4 cut(s)	50, 296, 652, 664
PspPI	GGNCC	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	289
PstNI	CAGNNNCTG	1 cut(s)	467
RsaI	GTAC	3 cut(s)	137, 479, 1022
RsaNI	GTAC	3 cut(s)	136, 478, 1021
SaqAI	TTAA	5 cut(s)	90, 195, 239, 879, 1014
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	4 cut(s)	3, 799, 1042, 1046
Sau96I	GGNCC	1 cut(s)	49
ScrFI	CCNGG	4 cut(s)	678, 738, 794, 1028
SduI	GDGCHC	1 cut(s)	237
SexAI	ACCWGGT	1 cut(s)	1026
SfaNI	GCATC	4 cut(s)	484, 709, 738, 976
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	49
SpeI	ACTAGT	1 cut(s)	829
Sse9I	AATT	4 cut(s)	73, 499, 762, 979
SsiI	CCGC	3 cut(s)	52, 55, 67
SspMI	CTAG	2 cut(s)	341, 830
StyD4I	CCNGG	4 cut(s)	676, 736, 792, 1026
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	3 cut(s)	37, 63, 164
TaqI	TCGA	4 cut(s)	6, 492, 798, 1045
TaqII	GACCGA	1 cut(s)	338
TasI	AATT	4 cut(s)	73, 499, 762, 979
TatI	WGTACW	2 cut(s)	477, 1020
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	3 cut(s)	215, 472, 1036
Tru1I	TTAA	5 cut(s)	90, 195, 239, 879, 1014
Tru9I	TTAA	5 cut(s)	90, 195, 239, 879, 1014
TscAI	CASTG	4 cut(s)	472, 537, 675, 761
TseFI	GTSAC	2 cut(s)	61, 752
Tsp45I	GTSAC	2 cut(s)	61, 752
TspDTI	ATGAA	1 cut(s)	135
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	4 cut(s)	472, 537, 675, 761
Van91I	CCANNNNNTGG	1 cut(s)	45
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	1 cut(s)	762
XceI	RCATGY	1 cut(s)	877
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	2 cut(s)	341, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.