Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012527_4311101_to_5153684

Orthogroup ID

OG0003434

Physical Location & Seq

Genomic Coordinates Forward (+)

539188 .. 549401

Gene Structure 10214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2760 bp

ATGGTGATGGCTGAGAATGAGGTTAGGGATGACCAGAGGGACCTCAATGTCAACGGCGGCGGGCCCAAGTCCCCATGGAAGACTCCGGTCTCCCTCGATGCTCCCGTCATGGCCGCTGAGTCCTGGCCTGCTCTGGCCGAAGCCCAAAGGCCCAAGAGTTTGGATGCTGCCGCAAAGCCACCAGCTGCGCAGCCGTCTCCCCTGCCCGCGCCTGTGCAGGGATTAGTCATGCAGCAGAAGTCAAATGGGTCTGGAAACTCCAACGCTTCACACAAGCATTCATCATCACATCACCAAAAAGGCCCTAGGAACCACCCAAATGCTGCACCTCCTTTTCCAGTACCCGTACCCTACCATCAACAACCACTTCCTCCTGTTTTTCATACCATGGTACAACCCCACATTCTGGCTTCTGGGTACGCTTACCAGCCATACACTGGACCCATTCCAAGTGTTGGAAATCATATTGCAAAATCTGGATGTGAGACCTCAGTGCAAAATTTTGTGCAACCAGTTCAACCTCAGCTACGAGGTAATCCAAATGCTTATGGTGTCAATTATTCTACTAGAAGACCCAACATGCAAGAACATGGTGGCCCTTGGAATCATACTTGGCATCAACAGCGAGCATTTAACCCCAGAGAGAACCTTCCTGTGCATCAGGGTGTTGGACCTAGCCCTTTCTTAAGACCTCAATTTTTTGGTCCAGCCCCAGGGTTCATGGTCGGCCCAAGCATTCCTGGACCTGCACCCATATGCTATCTTCCAGTTCCACCACTGGGCGCAATTAGGGGACCTCATCCTCCTAACCTTATGTCGCATCCATTAAATCCGGGGGCTCCATTACCACCCTCAGAAACACATACATTATCATTGAGGGACAATATTATAAAGCAAATAGAGTATTATTTCAGCGATGAAAATCTAAAGAATGACCGTTACTTAATTTCGATGATGGATGACCAAGGATGGGTCCCAATAACTACCATTGCCGACTTTAAAAGGGTTAAGAAAATGTGTACAGACATAGCATATATCCTTGACTCACTGCTGGGCTCAACTACTGTAGAAGTGCAGGCTAACAAGATAAGAAGACGTGATGAGTGGTCAAAGTGGATTGCAGATTCTGCAGACTCAATGTTAACTTCCAAGCTGCAAACCCCTTTGGTTCAAGTTGAAGATAGGTATATCAATGCTCCTGAGAATAATGCCAGCAATGATAGAAGGAAAACTTTGGAAGAAAAAGTTGAAGTTTTATCAGATGGAAAAAATTTGATGTCGTGCATACCATCTAACACCATACCTGACACTGATAATGTTCAATTTGATGGTGGATCACTAGCATCTTCTGATAATAATAGTGCTTTAAATGAAAAGTTGACTTCCAAATCAAATTGCAAGTCCTCGGATCCCAATATGGATCATTGCTCGGACCGCCCATACCACGCAGAGGGAATTGGAACTGGGAGATATGATGATAATAGGCCTGAAGGCGTGCCTTCAGATATGGATATGAAGAATCTTGGAAATCTATCTAATGATTTTGCAAACACATTTATGCTGGATGAAGAGCTAGAGCTTGAGCAGAAAATAATAAAGGATGATCATTCTCCTATTAGAAGTGTTGGCCGAACGATTGATGATGAATATGATGAGATTGTAGTCAATGATCAGGATGTCCAGAGACTTGTAATTGTCACCCAGAATAGTAGAGTTGGCAAAGGATCTAAACCTGATGATAAAGAATCAAAAACCCTTTCCAATGAGCTAGCGTCTGCTATAAACGATGGGCTTTACTTCTATGAGCAGGAACTGAAAACCAAGCGATCAAACCGTAAAAAGAACAGCACCAGCCATGACAATAGAGATGCAAACTCAAGATTTTCAAGCATTTCCAAAGGCTTTTCAAAATTAAAGCCTGGTGAAATATCTGGCAGTGGAATTGGCATTGAAGAGTCTGGAAGTGCTAATTCACGGAAGAAGCAAAATAGACTCTCCCAAAATCATCAGTCGTCCCCTAGACAGCGTTTCTTCTCAAGCAACTTTAGAAATTATGGTACTGGTCGGAACAATCTAGGAGTTGTATCAGAAAGTCCACCAAGTAACTCTGTTGGCTTTTTCTTTAGTTCCACGCCTCCTGAAACTCATGGACCAAGGCCTTCAAAATTGAGTGTCTCTCCTCATGGGTTTCTCTCAGGCAGTAGTCCACCGGTGGGTTCTGTGCCAAAGTCTTTTCCACCATTTCAGCATCCAAGTCATCAGCTTCTGGAAGAAAATGGTTTTAAACAGCAGAAGTACCTCAAGTATCATAAGCGGTGCCTGAATGACAGGAAGAAGTTGGGAATTGGTTGCAGTGAGGAAATGAATACTCTCTATAGATTTTGGTGTTATTTTCTAAGAAACATGTTCAACTCTTCAATGTATGATGAGTTCCAAAAGTATGCACTTGAAGATGCTGCTGCTGGTTATAATTATGGAGTAGAGTGCCTTTTCAGGTTCTATAGTTATGGTTTGGAGAAAGATTTTAGAGAGGACTTGTACAAGGACTTTGAACAGCTCACACTTGACTTTTACCATAAAGGCAATCTCTATGGCCTGGAAAAATATTGGGCTTTTCATCATTATCGTCAACAACGGGATCAGAAAGAGTCTCTAATGAAACATCCGGAATTGGATCAGTTGCTCAGTGAAGTATACTGTCGCTTGGAGGACTTCCGTGCCAAAGAGAGAGCCACTGTCATGAAAGAGAGGGGTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010286 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

920

Amino Acids

103.21

Weight (kDa)

7.19

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	296 - 350	9.9e-23	La domain
LARP1_HEAT	PF21071	750 - 897	2.9e-61	LARP1 HEAT repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21160 AT5G21160 AT5G21160
fragaria_vesca	FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710
malus_domestica	MD00G1106400.v1.1 MD11G1183000.v1.1
prunus_persica	Prupe.6G155800_v2.0.a1 Prupe.6G155800_v2.0.a1 Prupe.6G155800_v2.0.a1 Prupe.6G155800_v2.0.a1
pyrus_communis	pycom5153684g00350
rosa_chinensis	RchiOBHm_Chr5g0050001
rosa_laevigata	RLG00000034676
rosa_multiflora	Rmu_sc0000333.1_g000023
rosa_roxburghii	Rroxscaffold_1G00031150
rosa_rugosa	Rorug05G0256500
rosa_samantha	Rh5AG329600 Rh5BG340300 Rh5CG366300 Rh5DG352900
rosa_wichuraiana	Rw5G031120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	890, 2469
AasI	GACNNNNNNGTC	1 cut(s)	47
Acc16I	TGCGCA	1 cut(s)	189
Acc36I	ACCTGC	1 cut(s)	754
AccB1I	GGYRCC	1 cut(s)	2316
AccB7I	CCANNNNNTGG	3 cut(s)	406, 437, 455
AccI	GTMKAC	1 cut(s)	2694
AccII	CGCG	1 cut(s)	209
AccIII	TCCGGA	1 cut(s)	2665
AciI	CCGC	7 cut(s)	57, 60, 114, 171, 207, 1435, 2314
AclWI	GGATC	7 cut(s)	1342, 1403, 1416, 1428, 1732, 2646, 2682
AcoI	YGGCCR	3 cut(s)	111, 135, 1627
AcsI	RAATTY	2 cut(s)	499, 1270
AcuI	CTGAAG	2 cut(s)	1485, 1509
AfaI	GTAC	8 cut(s)	342, 348, 393, 419, 1021, 2059, 2297, 2540
AfiI	CCNNNNNNNGG	9 cut(s)	218, 406, 437, 455, 713, 779, 970, 1450, 2213
AflII	CTTAAG	1 cut(s)	685
AflIII	ACRYGT	1 cut(s)	2403
AgeI	ACCGGT	1 cut(s)	2209
AjiI	CACGTC	1 cut(s)	1097
AjnI	CCWGG	5 cut(s)	122, 712, 739, 1918, 2595
AluBI	AGCT	8 cut(s)	185, 526, 1153, 1573, 1579, 1768, 2263, 2557
AluI	AGCT	8 cut(s)	185, 526, 1153, 1573, 1579, 1768, 2263, 2557
Alw26I	GTCTC	6 cut(s)	94, 201, 479, 1678, 2179, 2655
AlwI	GGATC	7 cut(s)	1342, 1403, 1416, 1428, 1732, 2646, 2682
AlwNI	CAGNNNCTG	3 cut(s)	1127, 1813, 2266
Aor13HI	TCCGGA	1 cut(s)	2665
ApaI	GGGCCC	1 cut(s)	66
ApeKI	GCWGC	8 cut(s)	167, 185, 190, 232, 323, 1153, 2456, 2459
ApoI	RAATTY	2 cut(s)	499, 1270
ArsI	GACNNNNNNTTYG	2 cut(s)	1385, 1417
AsiGI	ACCGGT	1 cut(s)	2209
AspA2I	CCTAGG	1 cut(s)	305
AspLEI	GCGC	3 cut(s)	190, 211, 785
AsuC2I	CCSGG	1 cut(s)	834
AsuHPI	GGTGA	4 cut(s)	16, 284, 1690, 1934
AsuNHI	GCTAGC	1 cut(s)	1768
AvaII	GGWCC	9 cut(s)	40, 440, 671, 704, 743, 794, 973, 1432, 2150
AvrII	CCTAGG	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	66
BamHI	GGATCC	1 cut(s)	1408
BanI	GGYRCC	1 cut(s)	2316
BanII	GRGCYC	3 cut(s)	66, 841, 1058
BbsI	GAAGAC	3 cut(s)	86, 577, 1099
BbvCI	CCTCAGC	1 cut(s)	522
BbvI	GCAGC	8 cut(s)	154, 172, 202, 244, 310, 1140, 2443, 2446
BccI	CCATC	7 cut(s)	363, 949, 963, 1256, 1297, 1322, 1781
BceAI	ACGGC	2 cut(s)	70, 178
BciT130I	CCWGG	5 cut(s)	124, 714, 741, 1920, 2597
BclI	TGATCA	2 cut(s)	1603, 1669
BcnI	CCSGG	1 cut(s)	834
BcoDI	GTCTC	6 cut(s)	94, 201, 479, 1678, 2179, 2655
BfaI	CTAG	9 cut(s)	306, 567, 675, 1340, 1574, 1769, 2019, 2075, 2758
BfmI	CTRYAG	4 cut(s)	1065, 1128, 2374, 2500
BfrI	CTTAAG	1 cut(s)	685
BfuAI	ACCTGC	1 cut(s)	754
BlnI	CCTAGG	1 cut(s)	305
Bme1390I	CCNGG	6 cut(s)	124, 714, 741, 834, 1920, 2597
Bme18I	GGWCC	9 cut(s)	40, 440, 671, 704, 743, 794, 973, 1432, 2150
BmgBI	CACGTC	1 cut(s)	1097
BmrFI	CCNGG	6 cut(s)	124, 714, 741, 834, 1920, 2597
BmrI	ACTGGG	2 cut(s)	788, 1473
BmsI	GCATC	9 cut(s)	88, 154, 625, 667, 829, 1352, 1858, 2257, 2443
BmtI	GCTAGC	1 cut(s)	1772
BmuI	ACTGGG	2 cut(s)	788, 1473
BoxI	GACNNNNGTC	1 cut(s)	86
BpiI	GAAGAC	3 cut(s)	86, 577, 1099
BplI	GAGNNNNNCTC	2 cut(s)	2161, 2193
Bpu10I	CCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	4 cut(s)	1601, 1861, 2020, 2285
BpuMI	CCSGG	1 cut(s)	834
BsaBI	GATNNNNATC	1 cut(s)	921
BsaI	GGTCTC	2 cut(s)	94, 479
BsaWI	WCCGGW	3 cut(s)	85, 2209, 2665
Bsc4I	CCNNNNNNNGG	9 cut(s)	218, 406, 437, 455, 713, 779, 970, 1450, 2213
Bse118I	RCCGGY	1 cut(s)	2209
Bse1I	ACTGG	7 cut(s)	338, 442, 512, 767, 783, 1468, 2065
Bse3DI	GCAATG	3 cut(s)	987, 1222, 1423
Bse8I	GATNNNNATC	1 cut(s)	921
BseAI	TCCGGA	1 cut(s)	2665
BseBI	CCWGG	5 cut(s)	124, 714, 741, 1920, 2597
BseJI	GATNNNNATC	1 cut(s)	921
BseLI	CCNNNNNNNGG	9 cut(s)	218, 406, 437, 455, 713, 779, 970, 1450, 2213
BseMI	GCAATG	3 cut(s)	987, 1222, 1423
BseMII	CTCAG	7 cut(s)	108, 504, 536, 867, 1191, 2208, 2698
BseNI	ACTGG	7 cut(s)	338, 442, 512, 767, 783, 1468, 2065
BseRI	GAGGAG	1 cut(s)	2169
BseSI	GKGCMC	1 cut(s)	66
BseXI	GCAGC	8 cut(s)	154, 172, 202, 244, 310, 1140, 2443, 2446
BseYI	CCCAGC	1 cut(s)	1051
BsgI	GTGCAG	4 cut(s)	236, 309, 732, 1094
Bsh1236I	CGCG	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	2316
BshTI	ACCGGT	1 cut(s)	2209
BsiSI	CCGG	4 cut(s)	86, 833, 2210, 2666
BslFI	GGGAC	6 cut(s)	53, 55, 807, 893, 959, 1999
BslI	CCNNNNNNNGG	9 cut(s)	218, 406, 437, 455, 713, 779, 970, 1450, 2213
BsmAI	GTCTC	6 cut(s)	94, 201, 479, 1678, 2179, 2655
BsmBI	CGTCTC	1 cut(s)	201
BsmFI	GGGAC	6 cut(s)	53, 55, 807, 893, 959, 1999
BsmI	GAATGC	2 cut(s)	277, 735
Bso31I	GGTCTC	2 cut(s)	94, 479
Bsp120I	GGGCCC	1 cut(s)	62
Bsp1286I	GDGCHC	3 cut(s)	66, 841, 1058
Bsp13I	TCCGGA	1 cut(s)	2665
Bsp1407I	TGTACA	2 cut(s)	1019, 2538
Bsp143I	GATC	9 cut(s)	1334, 1408, 1420, 1603, 1669, 1724, 1826, 2638, 2674
Bsp19I	CCATGG	2 cut(s)	74, 387
BspACI	CCGC	7 cut(s)	57, 60, 114, 171, 207, 1435, 2314
BspCNI	CTCAG	8 cut(s)	4, 109, 503, 535, 866, 1192, 2207, 2697
BspEI	TCCGGA	1 cut(s)	2665
BspFNI	CGCG	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	2739
BspMAI	CTGCAG	1 cut(s)	1132
BspMI	ACCTGC	1 cut(s)	754
BspOI	GCTAGC	1 cut(s)	1772
BspPI	GGATC	7 cut(s)	1342, 1403, 1416, 1428, 1732, 2646, 2682
BspQI	GCTCTTC	1 cut(s)	1563
BspT107I	GGYRCC	1 cut(s)	2316
BspTI	CTTAAG	1 cut(s)	685
BspTNI	GGTCTC	2 cut(s)	94, 479
BsrDI	GCAATG	3 cut(s)	987, 1222, 1423
BsrFI	RCCGGY	1 cut(s)	2209
BsrGI	TGTACA	2 cut(s)	1019, 2538
BsrI	ACTGG	7 cut(s)	338, 442, 512, 767, 783, 1468, 2065
BssAI	RCCGGY	1 cut(s)	2209
BssMI	GATC	9 cut(s)	1334, 1408, 1420, 1603, 1669, 1724, 1826, 2638, 2674
BssNAI	GTATAC	1 cut(s)	2695
BssT1I	CCWWGG	6 cut(s)	74, 305, 387, 599, 964, 2153
Bst1107I	GTATAC	1 cut(s)	2695
Bst2UI	CCWGG	5 cut(s)	124, 714, 741, 1920, 2597
Bst4CI	ACNGT	5 cut(s)	938, 1066, 1835, 2699, 2737
Bst6I	CTCTTC	3 cut(s)	1563, 1947, 2419
BstAFI	CTTAAG	1 cut(s)	685
BstAPI	GCANNNNNTGC	1 cut(s)	1127
BstAUI	TGTACA	2 cut(s)	1019, 2538
BstC8I	GCNNGC	8 cut(s)	62, 129, 207, 627, 1077, 1213, 1496, 1770
BstDEI	CTNAG	9 cut(s)	12, 117, 490, 522, 853, 1200, 2194, 2396, 2684
BstDSI	CCRYGG	2 cut(s)	74, 387
BstFNI	CGCG	1 cut(s)	209
BstHHI	GCGC	3 cut(s)	190, 211, 785
BstKTI	GATC	9 cut(s)	1337, 1411, 1423, 1606, 1672, 1727, 1829, 2641, 2677
BstMAI	GTCTC	6 cut(s)	94, 201, 479, 1678, 2179, 2655
BstMBI	GATC	9 cut(s)	1334, 1408, 1420, 1603, 1669, 1724, 1826, 2638, 2674
BstMWI	GCNNNNNNNGC	3 cut(s)	622, 1127, 1434
BstNI	CCWGG	5 cut(s)	124, 714, 741, 1920, 2597
BstNSI	RCATGY	2 cut(s)	583, 2407
BstPAI	GACNNNNGTC	1 cut(s)	86
BstSCI	CCNGG	6 cut(s)	122, 712, 739, 832, 1918, 2595
BstSFI	CTRYAG	4 cut(s)	1065, 1128, 2374, 2500
BstSLI	GKGCMC	1 cut(s)	66
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	8 cut(s)	154, 172, 202, 244, 310, 1140, 2443, 2446
BstV2I	GAAGAC	3 cut(s)	86, 577, 1099
BstX2I	RGATCY	2 cut(s)	1408, 1724
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	2 cut(s)	1408, 1724
BstZ17I	GTATAC	1 cut(s)	2695
BtgI	CCRYGG	2 cut(s)	74, 387
BtgZI	GCGATG	1 cut(s)	930
BtrI	CACGTC	1 cut(s)	1097
BtsI	GCAGTG	3 cut(s)	1046, 1942, 2359
BtsIMutI	CAGTG	9 cut(s)	435, 498, 776, 1046, 1308, 1942, 2359, 2692, 2733
BveI	ACCTGC	1 cut(s)	754
Cac8I	GCNNGC	8 cut(s)	62, 129, 207, 627, 1077, 1213, 1496, 1770
CaiI	CAGNNNCTG	3 cut(s)	1127, 1813, 2266
CciI	TCATGA	1 cut(s)	2739
CfoI	GCGC	3 cut(s)	190, 211, 785
Cfr10I	RCCGGY	1 cut(s)	2209
CpoI	CGGWCCG	1 cut(s)	1432
CseI	GACGC	1 cut(s)	1761
Csp6I	GTAC	8 cut(s)	341, 347, 392, 418, 1020, 2058, 2296, 2539
CspAI	ACCGGT	1 cut(s)	2209
CspI	CGGWCCG	1 cut(s)	1432
CviQI	GTAC	8 cut(s)	341, 347, 392, 418, 1020, 2058, 2296, 2539
DdeI	CTNAG	9 cut(s)	12, 117, 490, 522, 853, 1200, 2194, 2396, 2684
DpnI	GATC	9 cut(s)	1336, 1410, 1422, 1605, 1671, 1726, 1828, 2640, 2676
DpnII	GATC	9 cut(s)	1334, 1408, 1420, 1603, 1669, 1724, 1826, 2638, 2674
DraI	TTTAAA	3 cut(s)	1000, 1368, 2284
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	3 cut(s)	111, 135, 1627
Eam1104I	CTCTTC	3 cut(s)	1563, 1947, 2419
EarI	CTCTTC	3 cut(s)	1563, 1947, 2419
Eco130I	CCWWGG	6 cut(s)	74, 305, 387, 599, 964, 2153
Eco147I	AGGCCT	2 cut(s)	1486, 2158
Eco24I	GRGCYC	3 cut(s)	66, 841, 1058
Eco31I	GGTCTC	2 cut(s)	94, 479
Eco47I	GGWCC	9 cut(s)	40, 440, 671, 704, 743, 794, 973, 1432, 2150
Eco57I	CTGAAG	2 cut(s)	1485, 1509
EcoO109I	RGGNCCY	4 cut(s)	40, 302, 794, 973
EcoRII	CCWGG	5 cut(s)	122, 712, 739, 1918, 2595
EcoT14I	CCWWGG	6 cut(s)	74, 305, 387, 599, 964, 2153
EcoT38I	GRGCYC	3 cut(s)	66, 841, 1058
ErhI	CCWWGG	6 cut(s)	74, 305, 387, 599, 964, 2153
Esp3I	CGTCTC	1 cut(s)	201
FalI	AAGNNNNNCTT	2 cut(s)	1216, 1248
FaqI	GGGAC	6 cut(s)	53, 55, 807, 893, 959, 1999
FauI	CCCGC	2 cut(s)	53, 214
FauNDI	CATATG	1 cut(s)	755
FbaI	TGATCA	2 cut(s)	1603, 1669
FblI	GTMKAC	1 cut(s)	2694
FriOI	GRGCYC	3 cut(s)	66, 841, 1058
FspBI	CTAG	9 cut(s)	306, 567, 675, 1340, 1574, 1769, 2019, 2075, 2758
FspI	TGCGCA	1 cut(s)	189
GlaI	GCGC	3 cut(s)	189, 210, 784
GsaI	CCCAGC	1 cut(s)	1055
HapII	CCGG	4 cut(s)	86, 833, 2210, 2666
HgaI	GACGC	1 cut(s)	1761
HhaI	GCGC	3 cut(s)	190, 211, 785
Hin6I	GCGC	3 cut(s)	188, 209, 783
HinP1I	GCGC	3 cut(s)	188, 209, 783
HincII	GTYRAC	4 cut(s)	52, 1143, 1380, 2630
HindII	GTYRAC	4 cut(s)	52, 1143, 1380, 2630
HpaI	GTTAAC	1 cut(s)	1143
HpaII	CCGG	4 cut(s)	86, 833, 2210, 2666
HphI	GGTGA	4 cut(s)	16, 284, 1690, 1934
Hpy166II	GTNNAC	8 cut(s)	52, 1020, 1143, 1380, 2096, 2207, 2630, 2695
Hpy188I	TCNGA	9 cut(s)	856, 1261, 1351, 1408, 1432, 1504, 2067, 2089, 2643
Hpy8I	GTNNAC	8 cut(s)	52, 1020, 1143, 1380, 2096, 2207, 2630, 2695
HpyAV	CCTTC	5 cut(s)	659, 1218, 1484, 1509, 2169
HpyCH4III	ACNGT	5 cut(s)	938, 1066, 1835, 2699, 2737
HpyCH4IV	ACGT	1 cut(s)	1096
HpyF10VI	GCNNNNNNNGC	3 cut(s)	622, 1127, 1434
HpyF3I	CTNAG	9 cut(s)	12, 117, 490, 522, 853, 1200, 2194, 2396, 2684
HpySE526I	ACGT	1 cut(s)	1096
HspAI	GCGC	3 cut(s)	188, 209, 783
KflI	GGGWCCC	1 cut(s)	973
Kpn2I	TCCGGA	1 cut(s)	2665
Ksp22I	TGATCA	2 cut(s)	1603, 1669
KspAI	GTTAAC	1 cut(s)	1143
Kzo9I	GATC	9 cut(s)	1334, 1408, 1420, 1603, 1669, 1724, 1826, 2638, 2674
LguI	GCTCTTC	1 cut(s)	1563
LmnI	GCTCC	3 cut(s)	106, 844, 1201
Lsp1109I	GCAGC	8 cut(s)	154, 172, 202, 244, 310, 1140, 2443, 2446
LweI	GCATC	9 cut(s)	88, 154, 625, 667, 829, 1352, 1858, 2257, 2443
MaeI	CTAG	9 cut(s)	306, 567, 675, 1340, 1574, 1769, 2019, 2075, 2758
MaeII	ACGT	1 cut(s)	1096
MaeIII	GTNAC	4 cut(s)	938, 1696, 2102, 2753
MalI	GATC	9 cut(s)	1336, 1410, 1422, 1605, 1671, 1726, 1828, 2640, 2676
MboI	GATC	9 cut(s)	1334, 1408, 1420, 1603, 1669, 1724, 1826, 2638, 2674
MflI	RGATCY	2 cut(s)	1408, 1724
MhlI	GDGCHC	3 cut(s)	66, 841, 1058
MlyI	GAGTC	7 cut(s)	76, 128, 1037, 1127, 1964, 1986, 2657
MmeI	TCCRAC	4 cut(s)	285, 436, 649, 2045
MroI	TCCGGA	1 cut(s)	2665
MslI	CAYNNNNRTG	5 cut(s)	318, 663, 754, 1556, 2738
MspA1I	CMGCKG	2 cut(s)	116, 185
MspCI	CTTAAG	1 cut(s)	685
MspI	CCGG	4 cut(s)	86, 833, 2210, 2666
MspR9I	CCNGG	6 cut(s)	124, 714, 741, 834, 1920, 2597
Mva1269I	GAATGC	2 cut(s)	277, 735
MvaI	CCWGG	5 cut(s)	124, 714, 741, 1920, 2597
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	3 cut(s)	622, 1127, 1434
NciI	CCSGG	1 cut(s)	834
NcoI	CCATGG	2 cut(s)	74, 387
NdeI	CATATG	1 cut(s)	755
NdeII	GATC	9 cut(s)	1334, 1408, 1420, 1603, 1669, 1724, 1826, 2638, 2674
NheI	GCTAGC	1 cut(s)	1768
NmuCI	GTSAC	2 cut(s)	1696, 2753
NsbI	TGCGCA	1 cut(s)	189
NspI	RCATGY	2 cut(s)	583, 2407
PagI	TCATGA	1 cut(s)	2739
PasI	CCCWGGG	1 cut(s)	713
PceI	AGGCCT	2 cut(s)	1486, 2158
PciI	ACATGT	1 cut(s)	2403
PciSI	GCTCTTC	1 cut(s)	1563
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	2 cut(s)	277, 735
PfeI	GAWTC	4 cut(s)	604, 1124, 1519, 1745
PflMI	CCANNNNNTGG	3 cut(s)	406, 437, 455
PfoI	TCCNGGA	1 cut(s)	739
PinAI	ACCGGT	1 cut(s)	2209
PleI	GAGTC	7 cut(s)	76, 127, 1037, 1127, 1963, 1986, 2656
PpsI	GAGTC	7 cut(s)	76, 127, 1037, 1127, 1963, 1986, 2656
PpuMI	RGGWCCY	3 cut(s)	40, 794, 973
PscI	ACATGT	1 cut(s)	2403
PshAI	GACNNNNGTC	1 cut(s)	86
PsiI	TTATAA	2 cut(s)	890, 2469
Psp5II	RGGWCCY	3 cut(s)	40, 794, 973
Psp6I	CCWGG	5 cut(s)	122, 712, 739, 1918, 2595
PspFI	CCCAGC	1 cut(s)	1051
PspGI	CCWGG	5 cut(s)	122, 712, 739, 1918, 2595
PspOMI	GGGCCC	1 cut(s)	62
PspPPI	RGGWCCY	3 cut(s)	40, 794, 973
PsrI	GAACNNNNNNTAC	2 cut(s)	2414, 2446
PstI	CTGCAG	1 cut(s)	1132
PstNI	CAGNNNCTG	3 cut(s)	1127, 1813, 2266
PsuI	RGATCY	2 cut(s)	1408, 1724
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	8 cut(s)	342, 348, 393, 419, 1021, 2059, 2297, 2540
RsaNI	GTAC	8 cut(s)	341, 347, 392, 418, 1020, 2058, 2296, 2539
RseI	CAYNNNNRTG	5 cut(s)	318, 663, 754, 1556, 2738
Rsr2I	CGGWCCG	1 cut(s)	1432
RsrII	CGGWCCG	1 cut(s)	1432
SapI	GCTCTTC	1 cut(s)	1563
Sau3AI	GATC	9 cut(s)	1334, 1408, 1420, 1603, 1669, 1724, 1826, 2638, 2674
SchI	GAGTC	7 cut(s)	76, 128, 1037, 1127, 1964, 1986, 2657
ScrFI	CCNGG	6 cut(s)	124, 714, 741, 834, 1920, 2597
SduI	GDGCHC	3 cut(s)	66, 841, 1058
SfaNI	GCATC	9 cut(s)	88, 154, 625, 667, 829, 1352, 1858, 2257, 2443
SfcI	CTRYAG	4 cut(s)	1065, 1128, 2374, 2500
SgrAI	CRCCGGYG	1 cut(s)	2209
SinI	GGWCC	9 cut(s)	40, 440, 671, 704, 743, 794, 973, 1432, 2150
SmiMI	CAYNNNNRTG	5 cut(s)	318, 663, 754, 1556, 2738
SmlI	CTYRAG	5 cut(s)	685, 1580, 1876, 2035, 2300
SmoI	CTYRAG	5 cut(s)	685, 1580, 1876, 2035, 2300
SseBI	AGGCCT	2 cut(s)	1486, 2158
SsiI	CCGC	7 cut(s)	57, 60, 114, 171, 207, 1435, 2314
SspI	AATATT	2 cut(s)	886, 2606
SspMI	CTAG	9 cut(s)	306, 567, 675, 1340, 1574, 1769, 2019, 2075, 2758
StuI	AGGCCT	2 cut(s)	1486, 2158
StyD4I	CCNGG	6 cut(s)	122, 712, 739, 832, 1918, 2595
StyI	CCWWGG	6 cut(s)	74, 305, 387, 599, 964, 2153
TaaI	ACNGT	5 cut(s)	938, 1066, 1835, 2699, 2737
TaiI	ACGT	1 cut(s)	1099
TaqI	TCGA	2 cut(s)	96, 950
TatI	WGTACW	2 cut(s)	1019, 2538
TauI	GCSGC	3 cut(s)	60, 116, 173
TfiI	GAWTC	4 cut(s)	604, 1124, 1519, 1745
TscAI	CASTG	9 cut(s)	442, 498, 783, 1053, 1315, 1942, 2359, 2692, 2740
TseFI	GTSAC	2 cut(s)	1696, 2753
TseI	GCWGC	8 cut(s)	167, 185, 190, 232, 323, 1153, 2456, 2459
Tsp45I	GTSAC	2 cut(s)	1696, 2753
TspGWI	ACGGA	2 cut(s)	1990, 2705
TspRI	CASTG	9 cut(s)	442, 498, 783, 1053, 1315, 1942, 2359, 2692, 2740
Van91I	CCANNNNNTGG	3 cut(s)	406, 437, 455
Vha464I	CTTAAG	1 cut(s)	685
VpaK11BI	GGWCC	9 cut(s)	40, 440, 671, 704, 743, 794, 973, 1432, 2150
XapI	RAATTY	2 cut(s)	499, 1270
XceI	RCATGY	2 cut(s)	583, 2407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
XmaJI	CCTAGG	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	2694
XspI	CTAG	9 cut(s)	306, 567, 675, 1340, 1574, 1769, 2019, 2075, 2758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.