Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_520

Orthogroup ID

OG0004006

Physical Location & Seq

Genomic Coordinates Reverse (-)

306951 .. 311018

Gene Structure 4068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom520g00360.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGGCGAGCTAGCAGTGCACCACGACCTAGGGCTAACTCATCGGATCCATTTCAGAATAGGCAAGAGCCTGAAGTGCCAAAGGCATCGAGCACTGCATCCTCGAACATAAGGAAAGCAAATTCAACTACAAATATTGTTGATGATCTTTCAGCAATTTTTGGAGCTGCTCCATCTTCTGGAGGAGAGTTCCAGGATGTTGAAGGAGAGACTGAAGAAAGGCGACGAGCCAGGTTGGAACGACACCAAAGGACCCAGGAGCGTACGTTGAAAGCACTTGCTGAAAAGAATGAGAGGGACCTTCAAGCCCAAAGAGAACAAGCTGAGAGACATAGGATTGCCGAATCACTAGATGTTGAGATCAAGCGTTGGGCTGTAGGGAAAGAGGGGAACTTGCGTGCTCTACTTTCAACGATGCAATATGTGCTGTGGCCTGAGTGTGGTTGGCAGCCAGTTTCTTTAACGGATATGATTACTGCTGCTTCAGTTAAGAAAGTATATAGGAAGGCAACTTTGTGCATTCATCCCGATAAGGTACAACAAAAGGGTGCTAATCTTCAACAGAAGTATATAGCCGAGAAGGTGTTCGACCTCCTTAAGGAAGCTTGGAACAAGTTCAATTCGGAGGAGCTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0016020 GO:0016192 GO:0031982 GO:0043226 GO:0043227 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

24.04

Weight (kDa)

9.07

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12770 AT4G12770 AT4G12780 AT4G12780 AT4G12780 AT4G12780 AT4G12780 AT4G12780 AT4G36520
fragaria_vesca	FvH4_1g25040 FvH4_1g25040 FvH4_1g25040 FvH4_1g25040 FvH4_1g25040
malus_domestica	MD00G1181300.v1.1 MD15G1135900.v1.1
prunus_persica	Prupe.4G277600_v2.0.a1 Prupe.4G277600_v2.0.a1
pyrus_communis	pycom15g12250 pycom520g00360
rosa_chinensis	RchiOBHm_Chr2g0122701
rosa_laevigata	RLG00000018706
rosa_multiflora	Rmu_sc0008259.1_g000015 Rmu_sc0017734.1_g000005
rosa_roxburghii	Rroxscaffold_2G00121300
rosa_rugosa	Rorug02G0241600 Rorug02G0241700
rosa_samantha	Rh2AG299900 Rh2BG308000 Rh2CG286200 Rh2CG286700 Rh2DG324000
rosa_wichuraiana	Rw2G023840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	179
AclWI	GGATC	2 cut(s)	41, 54
AcsI	RAATTY	1 cut(s)	121
AcuI	CTGAAG	3 cut(s)	93, 234, 468
AfaI	GTAC	2 cut(s)	265, 537
AfiI	CCNNNNNNNGG	3 cut(s)	179, 440, 598
AflII	CTTAAG	1 cut(s)	596
AgsI	TTSAA	7 cut(s)	126, 203, 271, 305, 411, 560, 619
AjnI	CCWGG	3 cut(s)	192, 230, 255
AluBI	AGCT	5 cut(s)	11, 167, 323, 605, 631
AluI	AGCT	5 cut(s)	11, 167, 323, 605, 631
Alw21I	GWGCWC	3 cut(s)	22, 95, 403
Alw26I	GTCTC	2 cut(s)	203, 322
Alw44I	GTGCAC	1 cut(s)	18
AlwI	GGATC	2 cut(s)	41, 54
AoxI	GGCC	1 cut(s)	431
ApaLI	GTGCAC	1 cut(s)	18
ApeKI	GCWGC	3 cut(s)	167, 448, 479
ApoI	RAATTY	1 cut(s)	121
Asp700I	GAANNNNTTC	2 cut(s)	584, 614
AspA2I	CCTAGG	1 cut(s)	29
AspS9I	GGNCC	2 cut(s)	252, 298
AsuNHI	GCTAGC	1 cut(s)	11
AvaII	GGWCC	2 cut(s)	252, 298
AvrII	CCTAGG	1 cut(s)	29
BaeGI	GKGCMC	1 cut(s)	22
BamHI	GGATCC	1 cut(s)	46
Bbv12I	GWGCWC	3 cut(s)	22, 95, 403
BbvI	GCAGC	3 cut(s)	154, 460, 466
BccI	CCATC	1 cut(s)	181
BciT130I	CCWGG	3 cut(s)	194, 232, 257
BcoDI	GTCTC	2 cut(s)	203, 322
BfaI	CTAG	3 cut(s)	12, 30, 350
BfmI	CTRYAG	1 cut(s)	375
BfrI	CTTAAG	1 cut(s)	596
BisI	GCNGC	3 cut(s)	168, 449, 480
BlnI	CCTAGG	1 cut(s)	29
BlsI	GCNGC	3 cut(s)	169, 450, 481
Bme1390I	CCNGG	3 cut(s)	194, 232, 257
Bme18I	GGWCC	2 cut(s)	252, 298
BmgT120I	GGNCC	2 cut(s)	252, 298
BmiI	GGNNCC	3 cut(s)	48, 254, 299
BmrFI	CCNGG	3 cut(s)	194, 232, 257
BmsI	GCATC	3 cut(s)	95, 107, 405
BmtI	GCTAGC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	29, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 440, 598
Bse1I	ACTGG	1 cut(s)	452
BseBI	CCWGG	3 cut(s)	194, 232, 257
BseDI	CCNNGG	2 cut(s)	29, 255
BseGI	GGATG	3 cut(s)	98, 202, 523
BseLI	CCNNNNNNNGG	3 cut(s)	179, 440, 598
BseMII	CTCAG	2 cut(s)	315, 426
BseNI	ACTGG	1 cut(s)	452
BseRI	GAGGAG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	22
BseXI	GCAGC	3 cut(s)	154, 460, 466
BshFI	GGCC	1 cut(s)	433
BsiHKAI	GWGCWC	3 cut(s)	22, 95, 403
BsiWI	CGTACG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	3 cut(s)	179, 440, 598
BsmAI	GTCTC	2 cut(s)	203, 322
BsmFI	GGGAC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	1 cut(s)	433
Bsp1286I	GDGCHC	3 cut(s)	22, 95, 403
Bsp143I	GATC	3 cut(s)	46, 145, 360
BspANI	GGCC	1 cut(s)	433
BspCNI	CTCAG	2 cut(s)	316, 427
BspLI	GGNNCC	3 cut(s)	48, 254, 299
BspOI	GCTAGC	1 cut(s)	15
BspPI	GGATC	2 cut(s)	41, 54
BspTI	CTTAAG	1 cut(s)	596
BsrI	ACTGG	1 cut(s)	452
BssECI	CCNNGG	2 cut(s)	29, 255
BssMI	GATC	3 cut(s)	46, 145, 360
BssT1I	CCWWGG	1 cut(s)	29
Bst2UI	CCWGG	3 cut(s)	194, 232, 257
BstAFI	CTTAAG	1 cut(s)	596
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstC8I	GCNNGC	3 cut(s)	9, 13, 399
BstDEI	CTNAG	2 cut(s)	324, 435
BstENI	CCTNNNNNAGG	1 cut(s)	596
BstF5I	GGATG	3 cut(s)	98, 202, 523
BstKTI	GATC	3 cut(s)	49, 148, 363
BstMAI	GTCTC	2 cut(s)	203, 322
BstMBI	GATC	3 cut(s)	46, 145, 360
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 76, 424
BstNI	CCWGG	3 cut(s)	194, 232, 257
BstSCI	CCNGG	3 cut(s)	192, 230, 255
BstSFI	CTRYAG	1 cut(s)	375
BstSLI	GKGCMC	1 cut(s)	22
BstV1I	GCAGC	3 cut(s)	154, 460, 466
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	433
BtsCI	GGATG	3 cut(s)	98, 202, 523
BtsI	GCAGTG	2 cut(s)	22, 93
BtsIMutI	CAGTG	2 cut(s)	22, 93
Cac8I	GCNNGC	3 cut(s)	9, 13, 399
Cfr13I	GGNCC	2 cut(s)	252, 298
Csp6I	GTAC	2 cut(s)	264, 536
CviQI	GTAC	2 cut(s)	264, 536
DdeI	CTNAG	2 cut(s)	324, 435
DpnI	GATC	3 cut(s)	48, 147, 362
DpnII	GATC	3 cut(s)	46, 145, 360
Eco130I	CCWWGG	1 cut(s)	29
Eco47I	GGWCC	2 cut(s)	252, 298
Eco57I	CTGAAG	3 cut(s)	93, 234, 468
EcoNI	CCTNNNNNAGG	1 cut(s)	596
EcoO109I	RGGNCCY	2 cut(s)	252, 298
EcoRII	CCWGG	3 cut(s)	192, 230, 255
EcoT14I	CCWWGG	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	29
FaiI	YATR	8 cut(s)	110, 333, 423, 470, 499, 501, 570, 572
FaqI	GGGAC	1 cut(s)	311
Fnu4HI	GCNGC	3 cut(s)	168, 449, 480
FokI	GGATG	3 cut(s)	85, 209, 510
Fsp4HI	GCNGC	3 cut(s)	168, 449, 480
FspBI	CTAG	3 cut(s)	12, 30, 350
GluI	GCNGC	3 cut(s)	168, 449, 480
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	603
HinfI	GANTC	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	3 cut(s)	46, 57, 625
Hpy188III	TCNNGA	2 cut(s)	180, 527
Hpy8I	GTNNAC	1 cut(s)	20
Hpy99I	CGWCG	1 cut(s)	228
HpyAV	CCTTC	4 cut(s)	197, 311, 499, 574
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	4 cut(s)	20, 98, 418, 519
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 76, 424
HpyF3I	CTNAG	2 cut(s)	324, 435
HpySE526I	ACGT	1 cut(s)	266
Kzo9I	GATC	3 cut(s)	46, 145, 360
LmnI	GCTCC	4 cut(s)	164, 175, 259, 628
Lsp1109I	GCAGC	3 cut(s)	154, 460, 466
LweI	GCATC	3 cut(s)	95, 107, 405
MaeI	CTAG	3 cut(s)	12, 30, 350
MaeII	ACGT	1 cut(s)	266
MalI	GATC	3 cut(s)	48, 147, 362
MboI	GATC	3 cut(s)	46, 145, 360
MboII	GAAGA	3 cut(s)	168, 227, 548
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	3 cut(s)	22, 95, 403
MluCI	AATT	3 cut(s)	121, 156, 619
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	6 cut(s)	112, 176, 288, 379, 602, 619
MroXI	GAANNNNTTC	2 cut(s)	584, 614
MseI	TTAA	3 cut(s)	461, 489, 597
MspCI	CTTAAG	1 cut(s)	596
MspR9I	CCNGG	3 cut(s)	194, 232, 257
Mva1269I	GAATGC	1 cut(s)	519
MvaI	CCWGG	3 cut(s)	194, 232, 257
MwoI	GCNNNNNNNGC	3 cut(s)	17, 76, 424
NdeII	GATC	3 cut(s)	46, 145, 360
NheI	GCTAGC	1 cut(s)	11
NlaIV	GGNNCC	3 cut(s)	48, 254, 299
NmeAIII	GCCGAG	1 cut(s)	601
PctI	GAATGC	1 cut(s)	519
PdmI	GAANNNNTTC	2 cut(s)	584, 614
PfeI	GAWTC	1 cut(s)	344
Pfl23II	CGTACG	1 cut(s)	263
PflMI	CCANNNNNTGG	1 cut(s)	179
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	3 cut(s)	169, 450, 481
PpuMI	RGGWCCY	2 cut(s)	252, 298
Psp5II	RGGWCCY	2 cut(s)	252, 298
Psp6I	CCWGG	3 cut(s)	192, 230, 255
PspGI	CCWGG	3 cut(s)	192, 230, 255
PspLI	CGTACG	1 cut(s)	263
PspN4I	GGNNCC	3 cut(s)	48, 254, 299
PspPI	GGNCC	2 cut(s)	252, 298
PspPPI	RGGWCCY	2 cut(s)	252, 298
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	2 cut(s)	265, 537
RsaNI	GTAC	2 cut(s)	264, 536
SaqAI	TTAA	3 cut(s)	461, 489, 597
SatI	GCNGC	3 cut(s)	168, 449, 480
Sau3AI	GATC	3 cut(s)	46, 145, 360
Sau96I	GGNCC	2 cut(s)	252, 298
ScrFI	CCNGG	3 cut(s)	194, 232, 257
SduI	GDGCHC	3 cut(s)	22, 95, 403
SfaNI	GCATC	3 cut(s)	95, 107, 405
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	2 cut(s)	252, 298
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
Sse9I	AATT	3 cut(s)	121, 156, 619
SspI	AATATT	1 cut(s)	136
SspMI	CTAG	3 cut(s)	12, 30, 350
StyD4I	CCNGG	3 cut(s)	192, 230, 255
StyI	CCWWGG	1 cut(s)	29
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	3 cut(s)	89, 104, 588
TasI	AATT	3 cut(s)	121, 156, 619
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	3 cut(s)	461, 489, 597
Tru9I	TTAA	3 cut(s)	461, 489, 597
TscAI	CASTG	2 cut(s)	22, 100
TseI	GCWGC	3 cut(s)	167, 448, 479
TspDTI	ATGAA	1 cut(s)	512
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	2 cut(s)	22, 100
Van91I	CCANNNNNTGG	1 cut(s)	179
Vha464I	CTTAAG	1 cut(s)	596
VneI	GTGCAC	1 cut(s)	18
VpaK11BI	GGWCC	2 cut(s)	252, 298
XagI	CCTNNNNNAGG	1 cut(s)	596
XapI	RAATTY	1 cut(s)	121
XmaJI	CCTAGG	1 cut(s)	29
XmnI	GAANNNNTTC	2 cut(s)	584, 614
XspI	CTAG	3 cut(s)	12, 30, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.