Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004006

Physical Location & Seq

Genomic Coordinates Forward (+)

24816081 .. 24823670

Gene Structure 7590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0241600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCGACTCTTCAAGTACCAGCATGCGTTCCTTCTCCTGCTGAGGACTCTGAGCAGCTCAAGAAGGCTTTTGAAGGATGGGGCACAAATGAGGGCTTGATCATTTCCATATTGGCTCATAGGAATGCTGATCAGAGAAGACTAATTCAGCAGACTTATGCTGAAACTTATGGGGAGGATCTTCTCAAGGCACTGGACAAAGAACTCACAAGTGATTTTGAGCGCGCTTTGCTGCTATGGACGCTGCATCCTTCTGAGCGTGATGCAGTTTTGGCTAATGAGGCTACAAAGAGGTTCACTTCAAGCAATTGGGTTCTCATGGAAATAGCTTGTTCTAGGTCTTCACATGAACTACACCTGGTAAAGCAGGCTTACCATGCTAAGTTCAAGAAATCCCTTGAAGAGGATGTTGCATTTCATACATCTGGAGACTTCCGCAAGCTTTTGGTGCCTCTTGTGAGTGCTTTCCGATATGAAGGAGATGAAGTGAACGTTACAGTAGCAAAAAGAGAGGCTAAGATACTTCATGAGAAAATCAAGGACAAACACTACAATGATGAGGAGCTCATCAGGATCTTCACTACCAGGAGTAAGGCACAGCTGAACGCTACTTTCAATCAGTACAACAATGAGTTTGGAAATGCCATTACAAAGGATTTGAAGGCTGATGCAGATGATGAGTTCCTCAAATTACTGAGAGCAACTGCCAAACTGTTGACCTTCCCTGAGAAATACTTTGAGAAGCTTCTGCGTCTGTGTATCAACAAGCTGGGGACAGACGAAGGTGCGCTTACTAGAGTTATTACCACAAGGGCTGAGGTTGACCTCCATCGCATTAAAGAAGAATACCAGCGCCGGAACAGTGTGCCTTTGGACCACGCAATTGAGAAGGACACTTCTGGTGACTATGAGAAGTTTCTTTTGGCACTGCTTGGACATGGAGATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0016020 GO:0016192 GO:0031982 GO:0043226 GO:0043227 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

36.14

Weight (kDa)

6.04

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 79	5.4e-21	Annexin
Annexin	PF00191	88 - 152	1.1e-16	Annexin
Annexin	PF00191	171 - 234	1.2e-13	Annexin
Annexin	PF00191	245 - 310	5.6e-19	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12770 AT4G12770 AT4G12780 AT4G12780 AT4G12780 AT4G12780 AT4G12780 AT4G12780 AT4G36520
fragaria_vesca	FvH4_1g25040 FvH4_1g25040 FvH4_1g25040 FvH4_1g25040 FvH4_1g25040
malus_domestica	MD00G1181300.v1.1 MD15G1135900.v1.1
prunus_persica	Prupe.4G277600_v2.0.a1 Prupe.4G277600_v2.0.a1
pyrus_communis	pycom15g12250 pycom520g00360
rosa_chinensis	RchiOBHm_Chr2g0122701
rosa_laevigata	RLG00000018706
rosa_multiflora	Rmu_sc0008259.1_g000015 Rmu_sc0017734.1_g000005
rosa_roxburghii	Rroxscaffold_2G00121300
rosa_rugosa	Rorug02G0241600 Rorug02G0241700
rosa_samantha	Rh2AG299900 Rh2BG308000 Rh2CG286200 Rh2CG286700 Rh2DG324000
rosa_wichuraiana	Rw2G023840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	448
AccII	CGCG	1 cut(s)	225
AciI	CCGC	1 cut(s)	436
AclI	AACGTT	1 cut(s)	492
AclWI	GGATC	2 cut(s)	186, 581
AfaI	GTAC	2 cut(s)	18, 623
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	7 cut(s)	14, 74, 303, 388, 401, 616, 661
AjnI	CCWGG	2 cut(s)	357, 584
AjuI	GAANNNNNNNTTGG	2 cut(s)	905, 937
AluBI	AGCT	7 cut(s)	58, 329, 442, 565, 601, 745, 769
AluI	AGCT	7 cut(s)	58, 329, 442, 565, 601, 745, 769
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	2 cut(s)	186, 581
ApeKI	GCWGC	3 cut(s)	55, 232, 244
AspLEI	GCGC	4 cut(s)	225, 227, 790, 855
AspS9I	GGNCC	1 cut(s)	874
AsuHPI	GGTGA	1 cut(s)	914
AvaII	GGWCC	1 cut(s)	874
BaeGI	GKGCMC	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	567
BbsI	GAAGAC	2 cut(s)	145, 333
Bbv12I	GWGCWC	1 cut(s)	567
BbvCI	CCTCAGC	2 cut(s)	42, 816
BbvI	GCAGC	3 cut(s)	67, 219, 231
BccI	CCATC	2 cut(s)	72, 837
BciT130I	CCWGG	2 cut(s)	359, 586
BclI	TGATCA	2 cut(s)	99, 130
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	2 cut(s)	336, 795
BfoI	RGCGCY	1 cut(s)	856
BisI	GCNGC	3 cut(s)	56, 233, 245
BlsI	GCNGC	3 cut(s)	57, 234, 246
Bme1390I	CCNGG	2 cut(s)	359, 586
Bme18I	GGWCC	1 cut(s)	874
BmgT120I	GGNCC	1 cut(s)	874
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	2 cut(s)	359, 586
BmsI	GCATC	3 cut(s)	253, 256, 658
BpiI	GAAGAC	2 cut(s)	145, 333
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	2 cut(s)	42, 816
BpuEI	CTTGAG	2 cut(s)	44, 170
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	359, 586
BseGI	GGATG	3 cut(s)	83, 247, 412
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	6 cut(s)	33, 42, 246, 686, 717, 807
BseNI	ACTGG	1 cut(s)	198
BsePI	GCGCGC	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	575
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	3 cut(s)	67, 219, 231
BseYI	CCCAGC	1 cut(s)	769
Bsh1236I	CGCG	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	448
BsiHKAI	GWGCWC	1 cut(s)	567
BsiSI	CCGG	1 cut(s)	856
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	787
BsmI	GAATGC	1 cut(s)	130
Bsp1286I	GDGCHC	2 cut(s)	86, 567
Bsp143I	GATC	4 cut(s)	99, 130, 178, 573
BspACI	CCGC	1 cut(s)	436
BspCNI	CTCAG	6 cut(s)	34, 43, 247, 687, 718, 808
BspFNI	CGCG	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	1 cut(s)	450
BspPI	GGATC	2 cut(s)	186, 581
BspT107I	GGYRCC	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	198
BssHII	GCGCGC	1 cut(s)	223
BssMI	GATC	4 cut(s)	99, 130, 178, 573
Bst2UI	CCWGG	2 cut(s)	359, 586
Bst4CI	ACNGT	3 cut(s)	499, 714, 863
Bst6I	CTCTTC	2 cut(s)	15, 396
BstC8I	GCNNGC	4 cut(s)	25, 225, 369, 440
BstDEI	CTNAG	8 cut(s)	42, 51, 255, 381, 516, 695, 726, 816
BstENI	CCTNNNNNAGG	1 cut(s)	401
BstF5I	GGATG	3 cut(s)	83, 247, 412
BstFNI	CGCG	1 cut(s)	225
BstH2I	RGCGCY	1 cut(s)	856
BstHHI	GCGC	4 cut(s)	225, 227, 790, 855
BstKTI	GATC	4 cut(s)	102, 133, 181, 576
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	4 cut(s)	99, 130, 178, 573
BstMWI	GCNNNNNNNGC	6 cut(s)	229, 241, 272, 281, 377, 448
BstNI	CCWGG	2 cut(s)	359, 586
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	2 cut(s)	357, 584
BstSLI	GKGCMC	1 cut(s)	86
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	67, 219, 231
BstV2I	GAAGAC	2 cut(s)	145, 333
BstX2I	RGATCY	2 cut(s)	178, 573
BstYI	RGATCY	2 cut(s)	178, 573
BtgZI	GCGATG	1 cut(s)	815
BtsCI	GGATG	3 cut(s)	83, 247, 412
BtsI	GCAGTG	1 cut(s)	926
BtsIMutI	CAGTG	3 cut(s)	191, 868, 926
Cac8I	GCNNGC	4 cut(s)	25, 225, 369, 440
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	4 cut(s)	225, 227, 790, 855
Cfr13I	GGNCC	1 cut(s)	874
CseI	GACGC	2 cut(s)	250, 740
CsiI	ACCWGGT	1 cut(s)	357
Csp6I	GTAC	2 cut(s)	17, 622
CviAII	CATG	6 cut(s)	24, 319, 347, 377, 527, 938
CviQI	GTAC	2 cut(s)	17, 622
DdeI	CTNAG	8 cut(s)	42, 51, 255, 381, 516, 695, 726, 816
DpnI	GATC	4 cut(s)	101, 132, 180, 575
DpnII	GATC	4 cut(s)	99, 130, 178, 573
Eam1104I	CTCTTC	2 cut(s)	15, 396
EarI	CTCTTC	2 cut(s)	15, 396
Ecl136II	GAGCTC	1 cut(s)	565
Eco24I	GRGCYC	1 cut(s)	567
Eco47I	GGWCC	1 cut(s)	874
Eco53kI	GAGCTC	1 cut(s)	565
EcoICRI	GAGCTC	1 cut(s)	565
EcoNI	CCTNNNNNAGG	1 cut(s)	401
EcoRII	CCWGG	2 cut(s)	357, 584
EcoT38I	GRGCYC	1 cut(s)	567
FaeI	CATG	6 cut(s)	27, 322, 350, 380, 530, 941
FalI	AAGNNNNNCTT	2 cut(s)	774, 806
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	6 cut(s)	23, 318, 346, 376, 526, 937
FbaI	TGATCA	2 cut(s)	99, 130
Fnu4HI	GCNGC	3 cut(s)	56, 233, 245
FokI	GGATG	3 cut(s)	90, 234, 419
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	3 cut(s)	56, 233, 245
FspBI	CTAG	2 cut(s)	336, 795
GlaI	GCGC	4 cut(s)	224, 226, 789, 854
GluI	GCNGC	3 cut(s)	56, 233, 245
GsaI	CCCAGC	1 cut(s)	773
GsuI	CTGGAG	1 cut(s)	447
HaeII	RGCGCY	1 cut(s)	856
HapII	CCGG	1 cut(s)	856
HgaI	GACGC	2 cut(s)	250, 740
HhaI	GCGC	4 cut(s)	225, 227, 790, 855
Hin1II	CATG	6 cut(s)	27, 322, 350, 380, 530, 941
Hin6I	GCGC	4 cut(s)	223, 225, 788, 853
HinP1I	GCGC	4 cut(s)	223, 225, 788, 853
HincII	GTYRAC	2 cut(s)	717, 823
HindII	GTYRAC	2 cut(s)	717, 823
HindIII	AAGCTT	2 cut(s)	440, 743
HinfI	GANTC	2 cut(s)	7, 47
HpaII	CCGG	1 cut(s)	856
HphI	GGTGA	1 cut(s)	914
Hpy166II	GTNNAC	4 cut(s)	297, 490, 717, 823
Hpy188I	TCNGA	4 cut(s)	52, 135, 256, 470
Hpy188III	TCNNGA	5 cut(s)	61, 388, 426, 527, 571
Hpy8I	GTNNAC	4 cut(s)	297, 490, 717, 823
HpyAV	CCTTC	9 cut(s)	42, 58, 68, 261, 470, 655, 730, 776, 883
HpyCH4III	ACNGT	3 cut(s)	499, 714, 863
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	4 cut(s)	247, 266, 413, 671
HpyF10VI	GCNNNNNNNGC	6 cut(s)	229, 241, 272, 281, 377, 448
HpyF3I	CTNAG	8 cut(s)	42, 51, 255, 381, 516, 695, 726, 816
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	6 cut(s)	27, 322, 350, 380, 530, 941
HspAI	GCGC	4 cut(s)	223, 225, 788, 853
Ksp22I	TGATCA	2 cut(s)	99, 130
Kzo9I	GATC	4 cut(s)	99, 130, 178, 573
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	3 cut(s)	67, 219, 231
LweI	GCATC	3 cut(s)	253, 256, 658
MabI	ACCWGGT	1 cut(s)	357
MaeI	CTAG	2 cut(s)	336, 795
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	2 cut(s)	493, 902
MalI	GATC	4 cut(s)	101, 132, 180, 575
MboI	GATC	4 cut(s)	99, 130, 178, 573
MboII	GAAGA	6 cut(s)	150, 173, 333, 413, 568, 854
MfeI	CAATTG	2 cut(s)	307, 882
MflI	RGATCY	2 cut(s)	178, 573
MhlI	GDGCHC	2 cut(s)	86, 567
MluCI	AATT	4 cut(s)	144, 307, 689, 882
MlyI	GAGTC	1 cut(s)	41
MseI	TTAA	1 cut(s)	837
MslI	CAYNNNNRTG	2 cut(s)	123, 552
MspA1I	CMGCKG	1 cut(s)	601
MspI	CCGG	1 cut(s)	856
MspR9I	CCNGG	2 cut(s)	359, 586
MunI	CAATTG	2 cut(s)	307, 882
Mva1269I	GAATGC	1 cut(s)	130
MvaI	CCWGG	2 cut(s)	359, 586
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	6 cut(s)	229, 241, 272, 281, 377, 448
NdeII	GATC	4 cut(s)	99, 130, 178, 573
NlaIII	CATG	6 cut(s)	27, 322, 350, 380, 530, 941
NlaIV	GGNNCC	1 cut(s)	450
NmuCI	GTSAC	1 cut(s)	902
NspI	RCATGY	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	27
PagI	TCATGA	1 cut(s)	526
PauI	GCGCGC	1 cut(s)	223
PctI	GAATGC	1 cut(s)	130
PkrI	GCNGC	3 cut(s)	57, 234, 246
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	567
Psp1406I	AACGTT	1 cut(s)	492
Psp6I	CCWGG	2 cut(s)	357, 584
PspFI	CCCAGC	1 cut(s)	769
PspGI	CCWGG	2 cut(s)	357, 584
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	1 cut(s)	874
PsuI	RGATCY	2 cut(s)	178, 573
PteI	GCGCGC	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	601
RsaI	GTAC	2 cut(s)	18, 623
RsaNI	GTAC	2 cut(s)	17, 622
RseI	CAYNNNNRTG	2 cut(s)	123, 552
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	837
SatI	GCNGC	3 cut(s)	56, 233, 245
Sau3AI	GATC	4 cut(s)	99, 130, 178, 573
Sau96I	GGNCC	1 cut(s)	874
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	2 cut(s)	359, 586
SduI	GDGCHC	2 cut(s)	86, 567
SexAI	ACCWGGT	1 cut(s)	357
SfaNI	GCATC	3 cut(s)	253, 256, 658
SinI	GGWCC	1 cut(s)	874
SmiMI	CAYNNNNRTG	2 cut(s)	123, 552
SmlI	CTYRAG	2 cut(s)	59, 185
SmoI	CTYRAG	2 cut(s)	59, 185
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	4 cut(s)	144, 307, 689, 882
SsiI	CCGC	1 cut(s)	436
SspMI	CTAG	2 cut(s)	336, 795
SstI	GAGCTC	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	357, 584
TaaI	ACNGT	3 cut(s)	499, 714, 863
TaiI	ACGT	1 cut(s)	495
TasI	AATT	4 cut(s)	144, 307, 689, 882
TatI	WGTACW	1 cut(s)	621
Tru1I	TTAA	1 cut(s)	837
Tru9I	TTAA	1 cut(s)	837
TscAI	CASTG	3 cut(s)	198, 868, 933
TseFI	GTSAC	1 cut(s)	902
TseI	GCWGC	3 cut(s)	55, 232, 244
Tsp45I	GTSAC	1 cut(s)	902
TspDTI	ATGAA	5 cut(s)	363, 407, 489, 498, 515
TspRI	CASTG	3 cut(s)	198, 868, 933
VpaK11BI	GGWCC	1 cut(s)	874
XagI	CCTNNNNNAGG	1 cut(s)	401
XceI	RCATGY	1 cut(s)	27
XspI	CTAG	2 cut(s)	336, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.