Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004006

Physical Location & Seq

Genomic Coordinates Reverse (-)

53835591 .. 53842936

Gene Structure 7346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2826 bp

ATGAACGACTTCTCGGGTCTCTTAAACTCCGATTACGGCTTCAAGCCCTCCGGCAAATCGGCCCCAATGTCTTCTTCTTCTTCCTCTTCTTCAAAGCCCCCAGCTTTCGATCTCGGATCCACCGGACCCTCCTCCAGATCAACTCGCACCTCCAATTCCTTCAACGGGTCGTTCTCCGACGATCGCGACCCGATCTTCGGAGCCCCGAAAGCCCCAGACTTTGAGAACATCTTCGGCGGCTCGGCCAGGTTCTCCACCAATTCCGAAGCTTTCAACTTGGATTCCATCTACGGCGCTGATTCCGGCTCCTCCAAGGTCGCCGATGCCGGCCCCGTTTTCGACAAGCCGGTTTACGACGAGGACATTTTCGACGGCGTTGCGGGGCTGAAGAGCTCAGCCGCGAACGACATTTTCTCCTCCTCGACGGTCACGTCGCCGCCGCCGCCGCCGGGGAGTGATAGTAGTGCGTTTGATGACCTTCTCGGTGGGTTTGGCAAGGCTGAGCCGGCGGCGTCGTCATCGAAAGGCTCTAGCTCACAGAAAGCTGACGTGGGTGTGCCGCCCGGTTTCGATGAATTGTTACCTGGATTTGGAGCTAGTAGCAGCCCCCAAACTGAAAGGTCAAACTCAGAAGCCAACTGGCCCCCAGAGACAACTGCCAATGTGAGTAAAACAACAACTTCCAAGGTGATTGGCGATCCTTTTGGAGTAGCAGGGCAGTTTAATGACCCCTTGGAGGAAATAAGTAGACTTTCTAATTCTGGAAGCTTGAAGGCTGATAACCCGTCTGTTGATAACGGGCGAGCATTTGATGATATAGATCCCTTTGATGGCCTTGGCAAGTCGGTCCCCGCATTTTCTTCAGGAAGGAGTTTCAGGGGAAAGGATAGTGGTAATTTAAAGGCAGATACAAGCACAAATAATGGCAGAGGTTCAACTGGTAAAGAATCAACCAAGTCTTCTGTGAGAAGTCCAGATAACCAGTCTCAGAGGAAGGTTCCTGTTGGAAATCATTGGGATCCTCATCAGACCTTTTTTGACATGCCTTCAGTTTCGACTGATTCTCACAAATCTGCAGGTCAAACTATGTCTCCACCTTCGTATGTAAATGCCAAGGAAGCAAATGTACCGGTAGATAGGTCTTCAAGATCTGAGGAAAACTTGGATTCATCAGATAATGTATGGCTTACGGTATCAGAGATCTCTCTAGTGACTCAGCCTACTAGTGCTCCACCACCTTCAAGACCACCTCCTCCAAGACCTGTGCAGGTTTCAAAGCCAAGAATGAGTTCTCCTGCTTCTACAAATTCAAGAAAGAAGGCTAGTGAATCCTCTACTGAGTTCTTTCAGGCTCCAAAATCAGCCTCTGCTGCAGCTAGGAGCTCTGGTGTTTCTTCAGTTGACGAACTAGGCGATTTTGGCATGGGAAAGAGCCAAAGTAACTTTGATGAACATGCAAATGGTCTTTCGGGTGAAGAATTGGAGCGGAACTCAGTTACTGATGCTGTGAAGGAGGCTATGGATAAAGCTGAGTTTAAAATGAGGCAGGCAAAAGAGAGAGGAAGTACAAAGTCTGCGAGAAGTAAAGAAGCACAGGAGAAGGAAAAAGAACGGCTGCAGAGGGAGAGTGAAGAGGAAGATATGGAACAGAGGAGACTGGAGAAAGAGAGGGAAACTGAGAGGGTGTGGGAAGACAAAGAAAGAGAGCAAAGGAAACTTGAGAAGGAAAGGGAGAGAGCCAGGGAGATGGAGGAGAAGAACAGACAAGCTGTGGAAAGAGCTACTAGGGAAGCACGTGAGAGAGCGGCAGCTGAAGCTCGCAGTAAGGCTGAAAGGGCTAAAACAGAGAGAGCCGCTGTTGACAGGGCAAATGCTGAAGCTAGAGCACGTGCTGAAAGGGCTGCAGTTCAGAGAGCTCAATCTGAAGCTCGGGAAAGGGCTGCAGCAGAAGCAAAGTTAAGAGCAGAAAAGGCTGCTGCAGAAGCCAGAGAAAGAGCTAATGCAGAAGCTAAGGAGAGGGAAGCAAGGGAGAGAACTGCTGCAGCAAGGTCTGAAGCTGAAGCACGAACAAGATCGGAGCGTGCTGCGGTGGAAAGGGCTGCTGCAGAGGCCCGAGAAAGGGCTAATGCTGCTGCGAGGGCGAGCCAACAAAGGAATGAAAATGATCTTGAGAACTTTTTCAACATGGGTCGGGCTAGCAGTGCGCCACGACCCAGGGCTAACTCATCGGATCCTTTTGATGCCCATTTTCAGAACAGGCAACAGCCTGAAGTGCCGAAGACATCAACTTCCTCAAACATAAAGAAAGCGTCTTCAACCACAAATATTGTTGATGATCTTTCATCAATTTTTGGAGCTGCTCCATCATCTAATGAGTTCCAAGAAGTTGAAGGAGAAACTGAAGAAAGGCGAAGAGCCAGGTTGGAACGACACCAAAGGACCAAGGAGCGTACGGTGAAAGCACTTGCTGAAAAGAACGAGCGCGACCTTCAAGCCCAAAGAGAACAAGCTGAGAGACATAGAATTGCTGAAACACTAGATGTTGAGATTAAGCGCTGGGCTGCAGGAAAAGAAGGAAATTTACGTGCTCTGCTGTCAACTTTGCAATATGTACTGTGGCCTGAATGTGGTTGGCAGCCAGTTTCCTTGACTGATATGATTACTGCTGCCCAAGTGAAGAAAGTATATAGAAAGGCAACTTTGTGTATTCATCCTGATAAGGTACAACAGAAAGGTGCCAATCTTCAACAGAAGTATGTAGCTGAGAAGGTGTTCGACCTCCTTAAGGAAGCTTGGAACAAGTTCAATTCAGAGGAGCTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0016020 GO:0016192 GO:0031982 GO:0043226 GO:0043227 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

941

Amino Acids

102.76

Weight (kDa)

6.09

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12770 AT4G12770 AT4G12780 AT4G12780 AT4G12780 AT4G12780 AT4G12780 AT4G12780 AT4G36520
fragaria_vesca	FvH4_1g25040 FvH4_1g25040 FvH4_1g25040 FvH4_1g25040 FvH4_1g25040
malus_domestica	MD00G1181300.v1.1 MD15G1135900.v1.1
prunus_persica	Prupe.4G277600_v2.0.a1 Prupe.4G277600_v2.0.a1
pyrus_communis	pycom15g12250 pycom520g00360
rosa_chinensis	RchiOBHm_Chr2g0122701
rosa_laevigata	RLG00000018706
rosa_multiflora	Rmu_sc0008259.1_g000015 Rmu_sc0017734.1_g000005
rosa_roxburghii	Rroxscaffold_2G00121300
rosa_rugosa	Rorug02G0241600 Rorug02G0241700
rosa_samantha	Rh2AG299900 Rh2BG308000 Rh2CG286200 Rh2CG286700 Rh2DG324000
rosa_wichuraiana	Rw2G023840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	430
Acc36I	ACCTGC	2 cut(s)	1067, 1258
AccB1I	GGYRCC	1 cut(s)	2735
AccBSI	CCGCTC	2 cut(s)	1486, 1805
AccI	GTMKAC	1 cut(s)	748
AccII	CGCG	3 cut(s)	186, 401, 2484
AclWI	GGATC	8 cut(s)	111, 124, 692, 815, 1013, 1026, 2225, 2238
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	2 cut(s)	1306, 2578
AcvI	CACGTG	2 cut(s)	1796, 1889
AcyI	GRCGYC	1 cut(s)	512
AfaI	GTAC	5 cut(s)	1128, 1567, 2452, 2613, 2724
AfeI	AGCGCT	1 cut(s)	2555
AflII	CTTAAG	1 cut(s)	2783
AgeI	ACCGGT	1 cut(s)	1129
AhlI	ACTAGT	1 cut(s)	1223
AjiI	CACGTC	2 cut(s)	432, 550
AjnI	CCWGG	5 cut(s)	245, 583, 1739, 2213, 2417
AjuI	GAANNNNNNNTTGG	4 cut(s)	58, 90, 1273, 1305
Alw21I	GWGCWC	6 cut(s)	395, 1231, 1385, 1888, 1918, 2590
Alw26I	GTCTC	6 cut(s)	23, 644, 990, 1095, 1648, 2509
AlwI	GGATC	8 cut(s)	111, 124, 692, 815, 1013, 1026, 2225, 2238
AlwNI	CAGNNNCTG	2 cut(s)	1367, 1499
Ama87I	CYCGRG	3 cut(s)	13, 1929, 2112
Aor51HI	AGCGCT	1 cut(s)	2555
AoxI	GGCC	7 cut(s)	60, 243, 328, 641, 832, 2109, 2618
ApoI	RAATTY	2 cut(s)	1306, 2578
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AsiGI	ACCGGT	1 cut(s)	1129
Asp700I	GAANNNNTTC	6 cut(s)	8, 230, 1288, 2177, 2771, 2801
AspLEI	GCGC	4 cut(s)	296, 2206, 2484, 2556
AspS9I	GGNCC	7 cut(s)	61, 125, 329, 642, 847, 2110, 2439
AsuC2I	CCSGG	2 cut(s)	450, 564
AsuHPI	GGTGA	3 cut(s)	700, 1484, 2467
AsuNHI	GCTAGC	1 cut(s)	2195
AvaI	CYCGRG	3 cut(s)	13, 1929, 2112
AvaII	GGWCC	3 cut(s)	125, 847, 2439
BamHI	GGATCC	3 cut(s)	116, 1018, 2230
BanI	GGYRCC	1 cut(s)	2735
BanII	GRGCYC	4 cut(s)	205, 395, 1385, 1918
BarI	GAAGNNNNNNTAC	4 cut(s)	1110, 1142, 2565, 2597
BbrPI	CACGTG	2 cut(s)	1796, 1889
BbsI	GAAGAC	6 cut(s)	63, 951, 1134, 1698, 2285, 2304
Bbv12I	GWGCWC	6 cut(s)	395, 1231, 1385, 1888, 1918, 2590
BccI	CCATC	4 cut(s)	293, 824, 1741, 2371
BceAI	ACGGC	4 cut(s)	52, 307, 388, 1628
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	5 cut(s)	247, 585, 1741, 2215, 2419
BcnI	CCSGG	2 cut(s)	450, 564
BcoDI	GTCTC	6 cut(s)	23, 644, 990, 1095, 1648, 2509
BcuI	ACTAGT	1 cut(s)	1223
BfmI	CTRYAG	9 cut(s)	1074, 1371, 1616, 1902, 1941, 1977, 2040, 2103, 2562
BfoI	RGCGCY	2 cut(s)	297, 2557
BfrI	CTTAAG	1 cut(s)	2783
BfuAI	ACCTGC	2 cut(s)	1067, 1258
BglII	AGATCT	2 cut(s)	1148, 1200
BlpI	GCTNAGC	2 cut(s)	394, 501
Bme1390I	CCNGG	7 cut(s)	247, 450, 564, 585, 1741, 2215, 2419
Bme18I	GGWCC	3 cut(s)	125, 847, 2439
BmeT110I	CYCGRG	3 cut(s)	13, 1929, 2112
BmgBI	CACGTC	2 cut(s)	432, 550
BmgT120I	GGNCC	7 cut(s)	61, 125, 329, 642, 847, 2110, 2439
BmrFI	CCNGG	7 cut(s)	247, 450, 564, 585, 1741, 2215, 2419
BmsI	GCATC	3 cut(s)	313, 1492, 2230
BmtI	GCTAGC	1 cut(s)	2199
BpiI	GAAGAC	6 cut(s)	63, 951, 1134, 1698, 2285, 2304
BplI	GAGNNNNNCTC	2 cut(s)	1475, 1507
BpmI	CTGGAG	2 cut(s)	118, 1679
Bpu10I	CCTNAGC	1 cut(s)	2010
Bpu1102I	GCTNAGC	2 cut(s)	394, 501
BpuEI	CTTGAG	2 cut(s)	1739, 2189
BpuMI	CCSGG	2 cut(s)	450, 564
BsaAI	YACGTR	3 cut(s)	1796, 1889, 2585
BsaBI	GATNNNNATC	2 cut(s)	819, 1023
BsaHI	GRCGYC	1 cut(s)	512
BsaI	GGTCTC	1 cut(s)	23
BsaWI	WCCGGW	2 cut(s)	122, 1129
Bse118I	RCCGGY	4 cut(s)	326, 346, 505, 1129
Bse1I	ACTGG	5 cut(s)	644, 943, 982, 1662, 2639
Bse8I	GATNNNNATC	2 cut(s)	819, 1023
BseBI	CCWGG	5 cut(s)	247, 585, 1741, 2215, 2419
BseGI	GGATG	1 cut(s)	2710
BseJI	GATNNNNATC	2 cut(s)	819, 1023
BseNI	ACTGG	5 cut(s)	644, 943, 982, 1662, 2639
BseRI	GAGGAG	7 cut(s)	121, 298, 406, 409, 1242, 1666, 1766
BseYI	CCCAGC	2 cut(s)	100, 2556
BsgI	GTGCAG	1 cut(s)	1286
Bsh1236I	CGCG	3 cut(s)	186, 401, 2484
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	7 cut(s)	62, 245, 330, 643, 834, 2111, 2620
BshNI	GGYRCC	1 cut(s)	2735
BshTI	ACCGGT	1 cut(s)	1129
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	6 cut(s)	395, 1231, 1385, 1888, 1918, 2590
BsiHKCI	CYCGRG	3 cut(s)	13, 1929, 2112
BsiSI	CCGG	9 cut(s)	51, 123, 303, 327, 347, 449, 506, 564, 1130
BsiWI	CGTACG	1 cut(s)	2450
BslFI	GGGAC	1 cut(s)	833
BsmAI	GTCTC	6 cut(s)	23, 644, 990, 1095, 1648, 2509
BsmFI	GGGAC	1 cut(s)	833
BsnI	GGCC	7 cut(s)	62, 245, 330, 643, 834, 2111, 2620
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	3 cut(s)	13, 1929, 2112
Bsp1286I	GDGCHC	7 cut(s)	205, 395, 1231, 1385, 1888, 1918, 2590
Bsp1720I	GCTNAGC	2 cut(s)	394, 501
Bsp68I	TCGCGA	1 cut(s)	186
BspANI	GGCC	7 cut(s)	62, 245, 330, 643, 834, 2111, 2620
BspFNI	CGCG	3 cut(s)	186, 401, 2484
BspMAI	CTGCAG	9 cut(s)	1078, 1375, 1620, 1906, 1945, 1981, 2044, 2107, 2566
BspMI	ACCTGC	2 cut(s)	1067, 1258
BspOI	GCTAGC	1 cut(s)	2199
BspPI	GGATC	8 cut(s)	111, 124, 692, 815, 1013, 1026, 2225, 2238
BspQI	GCTCTTC	2 cut(s)	383, 2407
BspT107I	GGYRCC	1 cut(s)	2735
BspTI	CTTAAG	1 cut(s)	2783
BspTNI	GGTCTC	1 cut(s)	23
BsrBI	CCGCTC	2 cut(s)	1486, 1805
BsrFI	RCCGGY	4 cut(s)	326, 346, 505, 1129
BsrI	ACTGG	5 cut(s)	644, 943, 982, 1662, 2639
BssAI	RCCGGY	4 cut(s)	326, 346, 505, 1129
BssNI	GRCGYC	1 cut(s)	512
BssT1I	CCWWGG	6 cut(s)	312, 684, 732, 835, 1113, 2442
Bst2UI	CCWGG	5 cut(s)	247, 585, 1741, 2215, 2419
Bst4CI	ACNGT	4 cut(s)	427, 1192, 2455, 2616
Bst6I	CTCTTC	4 cut(s)	91, 383, 1626, 2407
BstACI	GRCGYC	1 cut(s)	512
BstAFI	CTTAAG	1 cut(s)	2783
BstBAI	YACGTR	3 cut(s)	1796, 1889, 2585
BstC8I	GCNNGC	8 cut(s)	328, 507, 804, 1548, 1819, 2082, 2143, 2197
BstENI	CCTNNNNNAGG	1 cut(s)	2783
BstF5I	GGATG	1 cut(s)	2710
BstFNI	CGCG	3 cut(s)	186, 401, 2484
BstH2I	RGCGCY	2 cut(s)	297, 2557
BstHHI	GCGC	4 cut(s)	296, 2206, 2484, 2556
BstMAI	GTCTC	6 cut(s)	23, 644, 990, 1095, 1648, 2509
BstMCI	CGRYCG	1 cut(s)	184
BstNI	CCWGG	5 cut(s)	247, 585, 1741, 2215, 2419
BstNSI	RCATGY	2 cut(s)	1045, 1457
BstSCI	CCNGG	7 cut(s)	245, 448, 562, 583, 1739, 2213, 2417
BstSFI	CTRYAG	9 cut(s)	1074, 1371, 1616, 1902, 1941, 1977, 2040, 2103, 2562
BstUI	CGCG	3 cut(s)	186, 401, 2484
BstV2I	GAAGAC	6 cut(s)	63, 951, 1134, 1698, 2285, 2304
BstX2I	RGATCY	6 cut(s)	116, 820, 1018, 1148, 1200, 2230
BstXI	CCANNNNNNTGG	1 cut(s)	1747
BstYI	RGATCY	6 cut(s)	116, 820, 1018, 1148, 1200, 2230
BsuRI	GGCC	7 cut(s)	62, 245, 330, 643, 834, 2111, 2620
BtrI	CACGTC	2 cut(s)	432, 550
BtsCI	GGATG	1 cut(s)	2710
BtsI	GCAGTG	1 cut(s)	2206
BtsIMutI	CAGTG	1 cut(s)	2206
BtuMI	TCGCGA	1 cut(s)	186
BveI	ACCTGC	2 cut(s)	1067, 1258
Cac8I	GCNNGC	8 cut(s)	328, 507, 804, 1548, 1819, 2082, 2143, 2197
CaiI	CAGNNNCTG	2 cut(s)	1367, 1499
CfoI	GCGC	4 cut(s)	296, 2206, 2484, 2556
Cfr10I	RCCGGY	4 cut(s)	326, 346, 505, 1129
Cfr13I	GGNCC	7 cut(s)	61, 125, 329, 642, 847, 2110, 2439
CseI	GACGC	2 cut(s)	501, 2298
Csp6I	GTAC	5 cut(s)	1127, 1566, 2451, 2612, 2723
CspAI	ACCGGT	1 cut(s)	1129
CspCI	CAANNNNNGTGG	2 cut(s)	2308, 2343
CviAII	CATG	4 cut(s)	1042, 1423, 1454, 2185
CviQI	GTAC	5 cut(s)	1127, 1566, 2451, 2612, 2723
DraI	TTTAAA	2 cut(s)	900, 1537
DrdI	GACNNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	430
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	4 cut(s)	91, 383, 1626, 2407
EarI	CTCTTC	4 cut(s)	91, 383, 1626, 2407
Ecl136II	GAGCTC	3 cut(s)	393, 1383, 1916
Eco130I	CCWWGG	6 cut(s)	312, 684, 732, 835, 1113, 2442
Eco24I	GRGCYC	4 cut(s)	205, 395, 1385, 1918
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	3 cut(s)	125, 847, 2439
Eco47III	AGCGCT	1 cut(s)	2555
Eco53kI	GAGCTC	3 cut(s)	393, 1383, 1916
Eco72I	CACGTG	2 cut(s)	1796, 1889
Eco88I	CYCGRG	3 cut(s)	13, 1929, 2112
EcoICRI	GAGCTC	3 cut(s)	393, 1383, 1916
EcoNI	CCTNNNNNAGG	1 cut(s)	2783
EcoRII	CCWGG	5 cut(s)	245, 583, 1739, 2213, 2417
EcoT14I	CCWWGG	6 cut(s)	312, 684, 732, 835, 1113, 2442
EcoT38I	GRGCYC	4 cut(s)	205, 395, 1385, 1918
ErhI	CCWWGG	6 cut(s)	312, 684, 732, 835, 1113, 2442
FaeI	CATG	4 cut(s)	1045, 1426, 1457, 2188
FaqI	GGGAC	1 cut(s)	833
FatI	CATG	4 cut(s)	1041, 1422, 1453, 2184
FauI	CCCGC	2 cut(s)	373, 859
FblI	GTMKAC	1 cut(s)	748
FokI	GGATG	1 cut(s)	2697
FriOI	GRGCYC	4 cut(s)	205, 395, 1385, 1918
GlaI	GCGC	4 cut(s)	295, 2205, 2483, 2555
GsaI	CCCAGC	2 cut(s)	104, 2560
GsuI	CTGGAG	2 cut(s)	118, 1679
HaeII	RGCGCY	2 cut(s)	297, 2557
HaeIII	GGCC	7 cut(s)	62, 245, 330, 643, 834, 2111, 2620
HapII	CCGG	9 cut(s)	51, 123, 303, 327, 347, 449, 506, 564, 1130
HgaI	GACGC	2 cut(s)	501, 2298
HhaI	GCGC	4 cut(s)	296, 2206, 2484, 2556
Hin1I	GRCGYC	1 cut(s)	512
Hin1II	CATG	4 cut(s)	1045, 1426, 1457, 2188
Hin6I	GCGC	4 cut(s)	294, 2204, 2482, 2554
HinP1I	GCGC	4 cut(s)	294, 2204, 2482, 2554
HincII	GTYRAC	3 cut(s)	1402, 1861, 2598
HindII	GTYRAC	3 cut(s)	1402, 1861, 2598
HindIII	AAGCTT	3 cut(s)	267, 766, 2790
HinfI	GANTC	7 cut(s)	281, 299, 947, 1061, 1166, 1213, 1328
HpaII	CCGG	9 cut(s)	51, 123, 303, 327, 347, 449, 506, 564, 1130
HphI	GGTGA	3 cut(s)	700, 1484, 2467
Hpy166II	GTNNAC	5 cut(s)	352, 749, 1402, 1861, 2598
Hpy8I	GTNNAC	5 cut(s)	352, 749, 1402, 1861, 2598
Hpy99I	CGWCG	6 cut(s)	182, 359, 374, 427, 436, 517
HpyCH4III	ACNGT	4 cut(s)	427, 1192, 2455, 2616
HpyCH4IV	ACGT	5 cut(s)	431, 549, 1795, 1888, 2584
HpySE526I	ACGT	5 cut(s)	431, 549, 1795, 1888, 2584
Hsp92I	GRCGYC	1 cut(s)	512
Hsp92II	CATG	4 cut(s)	1045, 1426, 1457, 2188
HspAI	GCGC	4 cut(s)	294, 2204, 2482, 2554
KroI	GCCGGC	2 cut(s)	326, 505
KroNI	GCCGGC	2 cut(s)	328, 507
LguI	GCTCTTC	2 cut(s)	383, 2407
LweI	GCATC	3 cut(s)	313, 1492, 2230
MaeII	ACGT	5 cut(s)	431, 549, 1795, 1888, 2584
MaeIII	GTNAC	5 cut(s)	427, 579, 1210, 1439, 1495
MbiI	CCGCTC	2 cut(s)	1486, 1805
MflI	RGATCY	6 cut(s)	116, 820, 1018, 1148, 1200, 2230
MhlI	GDGCHC	7 cut(s)	205, 395, 1231, 1385, 1888, 1918, 2590
MlyI	GAGTC	1 cut(s)	1207
MmeI	TCCRAC	3 cut(s)	201, 985, 2403
MroNI	GCCGGC	2 cut(s)	326, 505
MroXI	GAANNNNTTC	6 cut(s)	8, 230, 1288, 2177, 2771, 2801
MseI	TTAA	7 cut(s)	23, 723, 899, 1536, 1958, 2550, 2784
MslI	CAYNNNNRTG	1 cut(s)	1458
MspA1I	CMGCKG	2 cut(s)	1811, 1856
MspCI	CTTAAG	1 cut(s)	2783
MspI	CCGG	9 cut(s)	51, 123, 303, 327, 347, 449, 506, 564, 1130
MspR9I	CCNGG	7 cut(s)	247, 450, 564, 585, 1741, 2215, 2419
MvaI	CCWGG	5 cut(s)	247, 585, 1741, 2215, 2419
MvnI	CGCG	3 cut(s)	186, 401, 2484
NaeI	GCCGGC	2 cut(s)	328, 507
NciI	CCSGG	2 cut(s)	450, 564
NgoMIV	GCCGGC	2 cut(s)	326, 505
NheI	GCTAGC	1 cut(s)	2195
NlaIII	CATG	4 cut(s)	1045, 1426, 1457, 2188
NmeAIII	GCCGAG	1 cut(s)	221
NmuCI	GTSAC	2 cut(s)	427, 1210
NruI	TCGCGA	1 cut(s)	186
NspI	RCATGY	2 cut(s)	1045, 1457
PasI	CCCWGGG	1 cut(s)	2214
PciSI	GCTCTTC	2 cut(s)	383, 2407
PcsI	WCGNNNNNNNCGW	2 cut(s)	428, 1410
PdiI	GCCGGC	2 cut(s)	328, 507
PdmI	GAANNNNTTC	6 cut(s)	8, 230, 1288, 2177, 2771, 2801
PfeI	GAWTC	6 cut(s)	281, 299, 947, 1061, 1166, 1328
Pfl23II	CGTACG	1 cut(s)	2450
PinAI	ACCGGT	1 cut(s)	1129
Ple19I	CGATCG	1 cut(s)	184
PleI	GAGTC	1 cut(s)	1207
PmaCI	CACGTG	2 cut(s)	1796, 1889
PmlI	CACGTG	2 cut(s)	1796, 1889
PpsI	GAGTC	1 cut(s)	1207
Ppu21I	YACGTR	3 cut(s)	1796, 1889, 2585
Psp124BI	GAGCTC	3 cut(s)	395, 1385, 1918
Psp6I	CCWGG	5 cut(s)	245, 583, 1739, 2213, 2417
PspCI	CACGTG	2 cut(s)	1796, 1889
PspFI	CCCAGC	2 cut(s)	100, 2556
PspGI	CCWGG	5 cut(s)	245, 583, 1739, 2213, 2417
PspLI	CGTACG	1 cut(s)	2450
PspPI	GGNCC	7 cut(s)	61, 125, 329, 642, 847, 2110, 2439
PstI	CTGCAG	9 cut(s)	1078, 1375, 1620, 1906, 1945, 1981, 2044, 2107, 2566
PstNI	CAGNNNCTG	2 cut(s)	1367, 1499
PsuI	RGATCY	6 cut(s)	116, 820, 1018, 1148, 1200, 2230
PvuI	CGATCG	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	1811
RruI	TCGCGA	1 cut(s)	186
RsaI	GTAC	5 cut(s)	1128, 1567, 2452, 2613, 2724
RsaNI	GTAC	5 cut(s)	1127, 1566, 2451, 2612, 2723
RseI	CAYNNNNRTG	1 cut(s)	1458
SacI	GAGCTC	3 cut(s)	395, 1385, 1918
SapI	GCTCTTC	2 cut(s)	383, 2407
SaqAI	TTAA	7 cut(s)	23, 723, 899, 1536, 1958, 2550, 2784
Sau96I	GGNCC	7 cut(s)	61, 125, 329, 642, 847, 2110, 2439
SchI	GAGTC	1 cut(s)	1207
ScrFI	CCNGG	7 cut(s)	247, 450, 564, 585, 1741, 2215, 2419
SduI	GDGCHC	7 cut(s)	205, 395, 1231, 1385, 1888, 1918, 2590
SfaNI	GCATC	3 cut(s)	313, 1492, 2230
SfcI	CTRYAG	9 cut(s)	1074, 1371, 1616, 1902, 1941, 1977, 2040, 2103, 2562
SinI	GGWCC	3 cut(s)	125, 847, 2439
SmiMI	CAYNNNNRTG	1 cut(s)	1458
SmlI	CTYRAG	3 cut(s)	1718, 2168, 2783
SmoI	CTYRAG	3 cut(s)	1718, 2168, 2783
SpeI	ACTAGT	1 cut(s)	1223
SspI	AATATT	1 cut(s)	2326
SstI	GAGCTC	3 cut(s)	395, 1385, 1918
StyD4I	CCNGG	7 cut(s)	245, 448, 562, 583, 1739, 2213, 2417
StyI	CCWWGG	6 cut(s)	312, 684, 732, 835, 1113, 2442
TaaI	ACNGT	4 cut(s)	427, 1192, 2455, 2616
TaiI	ACGT	5 cut(s)	434, 552, 1798, 1891, 2587
TaqI	TCGA	8 cut(s)	108, 339, 369, 422, 521, 570, 1055, 2775
TaqII	GACCGA	1 cut(s)	835
TatI	WGTACW	2 cut(s)	1565, 2611
TfiI	GAWTC	6 cut(s)	281, 299, 947, 1061, 1166, 1328
Tru1I	TTAA	7 cut(s)	23, 723, 899, 1536, 1958, 2550, 2784
Tru9I	TTAA	7 cut(s)	23, 723, 899, 1536, 1958, 2550, 2784
TscAI	CASTG	1 cut(s)	2206
TseFI	GTSAC	2 cut(s)	427, 1210
Tsp45I	GTSAC	2 cut(s)	427, 1210
TspDTI	ATGAA	7 cut(s)	17, 588, 1158, 1464, 2172, 2331, 2699
TspRI	CASTG	1 cut(s)	2206
Vha464I	CTTAAG	1 cut(s)	2783
VpaK11BI	GGWCC	3 cut(s)	125, 847, 2439
XagI	CCTNNNNNAGG	1 cut(s)	2783
XapI	RAATTY	2 cut(s)	1306, 2578
XceI	RCATGY	2 cut(s)	1045, 1457
XmiI	GTMKAC	1 cut(s)	748
XmnI	GAANNNNTTC	6 cut(s)	8, 230, 1288, 2177, 2771, 2801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.