pycom520g00640

Dehydrogenase

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_520
Physical Location & Seq
Forward (+)
554172 .. 559205
5034 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1380 bp
ATGGTGATGATCCGCAGTCTCAGTCGCAGTCTCGGTCGCAGTGCCATCGCCAAAACACTCCTCTCGCCATCAAATTCAAGGCCCTCTTCTTCTTCATCCTCTGCCCATTCTGCTATTCCGTTGTTGGCGCCGTTAGCGGGTCAACGCCTACGCAACAACTCTGCGGCATTTGAACCCGAATTCAGAGATACCACCACCAGCACCACCAGATGCCTTCACTCCAACGCCTCGCTTGGCGGCGGTGGCGGACTGCCTTCCTCCATGAGGGCAGCTGTCTTCAGGGAACCCAACAAACCTCTCACCTTCGAGGAATTTCACATCCCTCGCCCCAAATCCGGTGAACTTCTCATCAAAACCAAGGCATGCGGAGTTTGCCACTCTGATCTCCATGTTATGAAAGGCGAGCTTCCATTTGCTAGCCCATGTGTTGTGGGACATGAGATAACTGGTGAGGTTGTCGAACATGGACCGGCCACAGACACCAAAACTATAGCAAGATTACCAATTGGATCTCGAGTTGTTGGAGCTTTCATCATGCCTTGTGGCAACTGTTCCTACTGTTCAAAGGGCCACGATGATCTATGCGAGGATTTCTTTGCTTATAACCGTGCAAAAGGAACTCTTTATGATGGTGAAACTCGGCTGTTCCTCCGCAGCAGTGGAGAACCAGTATACATGTATAGTATGGGAGGCCTTGCTGAATACTGTGTTGTGCCGGCAAATGCATTGACTATTTTGCCCGAGTCATTGCCATACATCGAGTCTGCAGTTTTAGGTTGTGCAGTGTTTACCGCTTATGGTACTATGGCTAATGCGGCTCAGGTGAAGCCTGGGGATTCAGTTGCTGTGATTGGAATTGGGGGTGTAGGGTCAAGCTGTTTGCAGATAGCAAGAGCATTTGGTGCCTCTGATATTATCGCTGTGGATGTTCAAGATGAAAAACTGCAGAAAGCCAAGATATTTGGAGCTACGCATGCTGTAAATGCAGCTAAGGAAGATGCTGTTGGCAAAATAATGGAAATAACTGGTGGAAAGGGTGTGGACATCGCTGTGGAAGCCCTGGGAAGGCCGCAGACATTTTTGCAATGTGTGCAAAGTGTGAAAGATGGAGGAAAAGCTGTAATGGTTGGGCTTTCACAAGCTGGTGCAGTTGGGGAAGTAGATATAAACCGTCTTGTCCGTAGAAAGATACAAATCATTGGATCTTACGGAGGGAGGGCAAGGCAGGATCTGCCAAAGTTGGTCAGATTGGCAGAATCAGGCGTATTTGATCTAGCTAATGCTGTTTCTAGAAGGTACAAATTTGAGGAGAGTAACGAAGCATTCCAGGAACTCAATAAGGGAAGCATTGTTGGTCGGGCAGTGGTTGAGATAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

460

Amino Acids

48.56

Weight (kDa)

8.53

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 112 - 247 8.3e-25 Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C PF16912 273 - 446 4.3e-07 Glucose dehydrogenase C-terminus
ADH_zinc_N PF00107 288 - 419 3.1e-33 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 321 - 456 6.8e-13 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010272)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 603
AccB1I GGYRCC 2 cut(s) 127, 902
AccI GTMKAC 1 cut(s) 672
AclWI GGATC 4 cut(s) 4, 517, 1210, 1236
AcoI YGGCCR 1 cut(s) 471
AcsI RAATTY 4 cut(s) 73, 179, 311, 1301
AcuI CTGAAG 1 cut(s) 262
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 2 cut(s) 802, 1298
AfiI CCNNNNNNNGG 4 cut(s) 137, 264, 335, 1065
AflIII ACRYGT 1 cut(s) 675
AgsI TTSAA 4 cut(s) 78, 173, 564, 932
AjnI CCWGG 3 cut(s) 829, 1059, 1326
AjuI GAANNNNNNNTTGG 2 cut(s) 987, 1019
AluBI AGCT 9 cut(s) 272, 406, 527, 876, 968, 989, 1118, 1142, 1277
AluI AGCT 9 cut(s) 272, 406, 527, 876, 968, 989, 1118, 1142, 1277
Alw26I GTCTC 2 cut(s) 23, 35
AlwI GGATC 4 cut(s) 4, 517, 1210, 1236
AlwNI CAGNNNCTG 2 cut(s) 845, 1231
Ama87I CYCGRG 2 cut(s) 513, 740
AoxI GGCC 5 cut(s) 80, 471, 568, 691, 1067
ApeKI GCWGC 3 cut(s) 269, 654, 986
ApoI RAATTY 4 cut(s) 73, 179, 311, 1301
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 3 cut(s) 81, 467, 568
AsuHPI GGTGA 6 cut(s) 16, 292, 350, 461, 644, 835
AsuNHI GCTAGC 1 cut(s) 416
AvaI CYCGRG 2 cut(s) 513, 740
AvaII GGWCC 1 cut(s) 467
BanI GGYRCC 2 cut(s) 127, 902
BbsI GAAGAC 1 cut(s) 268
BbvI GCAGC 3 cut(s) 281, 666, 998
BccI CCATC 4 cut(s) 53, 76, 623, 1100
BceAI ACGGC 1 cut(s) 115
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BciT130I CCWGG 3 cut(s) 831, 1061, 1328
BcoDI GTCTC 2 cut(s) 23, 35
BfaI CTAG 3 cut(s) 417, 1274, 1290
BfmI CTRYAG 3 cut(s) 489, 765, 944
BfoI RGCGCY 1 cut(s) 131
BisI GCNGC 7 cut(s) 165, 238, 270, 655, 816, 987, 1070
BlsI GCNGC 7 cut(s) 166, 239, 271, 656, 817, 988, 1071
Bme1390I CCNGG 3 cut(s) 831, 1061, 1328
Bme18I GGWCC 1 cut(s) 467
BmeT110I CYCGRG 2 cut(s) 513, 740
BmgT120I GGNCC 3 cut(s) 81, 467, 568
BmiI GGNNCC 3 cut(s) 129, 285, 904
BmrFI CCNGG 3 cut(s) 831, 1061, 1328
BmsI GCATC 2 cut(s) 200, 988
BmtI GCTAGC 1 cut(s) 420
BpiI GAAGAC 1 cut(s) 268
Bpu10I CCTNAGC 2 cut(s) 819, 990
BsaBI GATNNNNATC 1 cut(s) 1193
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 4 cut(s) 357, 830, 1059, 1060
BsaWI WCCGGW 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 654, 684
Bsc4I CCNNNNNNNGG 4 cut(s) 137, 264, 335, 1065
Bse118I RCCGGY 2 cut(s) 469, 715
Bse1I ACTGG 3 cut(s) 451, 668, 1030
Bse3DI GCAATG 2 cut(s) 746, 1091
Bse8I GATNNNNATC 1 cut(s) 1193
BseBI CCWGG 3 cut(s) 831, 1061, 1328
BseDI CCNNGG 4 cut(s) 357, 830, 1059, 1060
BseGI GGATG 3 cut(s) 95, 318, 931
BseJI GATNNNNATC 1 cut(s) 1193
BseLI CCNNNNNNNGG 4 cut(s) 137, 264, 335, 1065
BseMI GCAATG 2 cut(s) 746, 1091
BseMII CTCAG 2 cut(s) 34, 833
BseNI ACTGG 3 cut(s) 451, 668, 1030
BseRI GAGGAG 2 cut(s) 50, 1322
BseXI GCAGC 3 cut(s) 281, 666, 998
BsgI GTGCAG 2 cut(s) 801, 1167
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 5 cut(s) 82, 473, 570, 693, 1069
BshNI GGYRCC 2 cut(s) 127, 902
BsiEI CGRYCG 1 cut(s) 37
BsiHKCI CYCGRG 2 cut(s) 513, 740
BsiSI CCGG 3 cut(s) 336, 470, 716
BslFI GGGAC 1 cut(s) 447
BslI CCNNNNNNNGG 4 cut(s) 137, 264, 335, 1065
BsmAI GTCTC 2 cut(s) 23, 35
BsmFI GGGAC 1 cut(s) 447
BsmI GAATGC 1 cut(s) 1322
BsnI GGCC 5 cut(s) 82, 473, 570, 693, 1069
BsoBI CYCGRG 2 cut(s) 513, 740
Bsp143I GATC 7 cut(s) 9, 382, 509, 577, 1202, 1228, 1270
BspANI GGCC 5 cut(s) 82, 473, 570, 693, 1069
BspCNI CTCAG 2 cut(s) 33, 832
BspLI GGNNCC 3 cut(s) 129, 285, 904
BspMAI CTGCAG 2 cut(s) 769, 948
BspOI GCTAGC 1 cut(s) 420
BspPI GGATC 4 cut(s) 4, 517, 1210, 1236
BspT107I GGYRCC 2 cut(s) 127, 902
BsrDI GCAATG 2 cut(s) 746, 1091
BsrFI RCCGGY 2 cut(s) 469, 715
BsrI ACTGG 3 cut(s) 451, 668, 1030
BssAI RCCGGY 2 cut(s) 469, 715
BssECI CCNNGG 4 cut(s) 357, 830, 1059, 1060
BssMI GATC 7 cut(s) 9, 382, 509, 577, 1202, 1228, 1270
BssNAI GTATAC 1 cut(s) 673
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 357
Bst1107I GTATAC 1 cut(s) 673
Bst2UI CCWGG 3 cut(s) 831, 1061, 1328
Bst4CI ACNGT 5 cut(s) 551, 560, 608, 707, 1172
Bst6I CTCTTC 1 cut(s) 91
BstACI GRCGYC 1 cut(s) 128
BstAPI GCANNNNNTGC 3 cut(s) 902, 1090, 1231
BstC8I GCNNGC 5 cut(s) 364, 404, 418, 717, 975
BstDEI CTNAG 3 cut(s) 20, 819, 990
BstENI CCTNNNNNAGG 1 cut(s) 262
BstF5I GGATG 3 cut(s) 95, 318, 931
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 7 cut(s) 12, 385, 512, 580, 1205, 1231, 1273
BstMAI GTCTC 2 cut(s) 23, 35
BstMBI GATC 7 cut(s) 9, 382, 509, 577, 1202, 1228, 1270
BstMCI CGRYCG 1 cut(s) 37
BstNI CCWGG 3 cut(s) 831, 1061, 1328
BstNSI RCATGY 3 cut(s) 366, 679, 977
BstSCI CCNGG 3 cut(s) 829, 1059, 1326
BstSFI CTRYAG 3 cut(s) 489, 765, 944
BstV1I GCAGC 3 cut(s) 281, 666, 998
BstV2I GAAGAC 1 cut(s) 268
BstX2I RGATCY 3 cut(s) 509, 1202, 1228
BstYI RGATCY 3 cut(s) 509, 1202, 1228
BstZ17I GTATAC 1 cut(s) 673
BsuRI GGCC 5 cut(s) 82, 473, 570, 693, 1069
BtgZI GCGATG 2 cut(s) 31, 1030
BtsCI GGATG 3 cut(s) 95, 318, 931
BtsI GCAGTG 4 cut(s) 46, 664, 789, 1368
BtsIMutI CAGTG 4 cut(s) 46, 664, 789, 1368
Cac8I GCNNGC 5 cut(s) 364, 404, 418, 717, 975
CaiI CAGNNNCTG 2 cut(s) 845, 1231
CfoI GCGC 1 cut(s) 130
Cfr10I RCCGGY 2 cut(s) 469, 715
Cfr13I GGNCC 3 cut(s) 81, 467, 568
Csp6I GTAC 2 cut(s) 801, 1297
CviAII CATG 9 cut(s) 262, 363, 389, 423, 437, 464, 535, 676, 974
CviQI GTAC 2 cut(s) 801, 1297
DdeI CTNAG 3 cut(s) 20, 819, 990
DinI GGCGCC 1 cut(s) 129
DpnI GATC 7 cut(s) 11, 384, 511, 579, 1204, 1230, 1272
DpnII GATC 7 cut(s) 9, 382, 509, 577, 1202, 1228, 1270
EaeI YGGCCR 1 cut(s) 471
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
EciI GGCGGA 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 357
Eco147I AGGCCT 1 cut(s) 693
Eco47I GGWCC 1 cut(s) 467
Eco57I CTGAAG 1 cut(s) 262
Eco88I CYCGRG 2 cut(s) 513, 740
EcoNI CCTNNNNNAGG 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 179
EcoRII CCWGG 3 cut(s) 829, 1059, 1326
EcoT14I CCWWGG 1 cut(s) 357
EcoT22I ATGCAT 1 cut(s) 727
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 9 cut(s) 265, 366, 392, 426, 440, 467, 538, 679, 977
FalI AAGNNNNNCTT 6 cut(s) 70, 102, 390, 422, 606, 638
FaqI GGGAC 1 cut(s) 447
FatI CATG 9 cut(s) 261, 362, 388, 422, 436, 463, 534, 675, 973
FauI CCCGC 1 cut(s) 130
FblI GTMKAC 1 cut(s) 672
Fnu4HI GCNGC 7 cut(s) 165, 238, 270, 655, 816, 987, 1070
FokI GGATG 3 cut(s) 82, 305, 938
Fsp4HI GCNGC 7 cut(s) 165, 238, 270, 655, 816, 987, 1070
FspBI CTAG 3 cut(s) 417, 1274, 1290
GlaI GCGC 1 cut(s) 129
GluI GCNGC 7 cut(s) 165, 238, 270, 655, 816, 987, 1070
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 5 cut(s) 82, 473, 570, 693, 1069
HapII CCGG 3 cut(s) 336, 470, 716
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 9 cut(s) 265, 366, 392, 426, 440, 467, 538, 679, 977
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HincII GTYRAC 1 cut(s) 143
HindII GTYRAC 1 cut(s) 143
HinfI GANTC 4 cut(s) 743, 761, 836, 1256
HpaII CCGG 3 cut(s) 336, 470, 716
HphI GGTGA 6 cut(s) 16, 292, 350, 461, 644, 835
Hpy166II GTNNAC 5 cut(s) 143, 341, 673, 789, 1042
Hpy188I TCNGA 4 cut(s) 185, 382, 910, 1247
Hpy188III TCNNGA 3 cut(s) 513, 932, 1290
Hpy8I GTNNAC 5 cut(s) 143, 341, 673, 789, 1042
HpyAV CCTTC 5 cut(s) 224, 264, 313, 1059, 1287
HpyCH4III ACNGT 5 cut(s) 551, 560, 608, 707, 1172
HpyF3I CTNAG 3 cut(s) 20, 819, 990
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 9 cut(s) 265, 366, 392, 426, 440, 467, 538, 679, 977
HspAI GCGC 1 cut(s) 128
KasI GGCGCC 1 cut(s) 127
KroI GCCGGC 1 cut(s) 715
KroNI GCCGGC 1 cut(s) 717
Kzo9I GATC 7 cut(s) 9, 382, 509, 577, 1202, 1228, 1270
LmnI GCTCC 2 cut(s) 524, 965
Lsp1109I GCAGC 3 cut(s) 281, 666, 998
LweI GCATC 2 cut(s) 200, 988
MaeI CTAG 3 cut(s) 417, 1274, 1290
MaeIII GTNAC 1 cut(s) 1313
MalI GATC 7 cut(s) 11, 384, 511, 579, 1204, 1230, 1272
MboI GATC 7 cut(s) 9, 382, 509, 577, 1202, 1228, 1270
MboII GAAGA 5 cut(s) 78, 81, 84, 268, 1007
MfeI CAATTG 1 cut(s) 504
MflI RGATCY 3 cut(s) 509, 1202, 1228
MluCI AATT 6 cut(s) 73, 179, 311, 504, 855, 1301
Mly113I GGCGCC 1 cut(s) 128
MlyI GAGTC 2 cut(s) 752, 770
MmeI TCCRAC 2 cut(s) 246, 502
Mph1103I ATGCAT 1 cut(s) 727
MroNI GCCGGC 1 cut(s) 715
MslI CAYNNNNRTG 1 cut(s) 1049
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 3 cut(s) 336, 470, 716
MspR9I CCNGG 3 cut(s) 831, 1061, 1328
MunI CAATTG 1 cut(s) 504
Mva1269I GAATGC 1 cut(s) 1322
MvaI CCWGG 3 cut(s) 831, 1061, 1328
NaeI GCCGGC 1 cut(s) 717
NarI GGCGCC 1 cut(s) 128
NdeII GATC 7 cut(s) 9, 382, 509, 577, 1202, 1228, 1270
NgoMIV GCCGGC 1 cut(s) 715
NheI GCTAGC 1 cut(s) 416
NlaIII CATG 9 cut(s) 265, 366, 392, 426, 440, 467, 538, 679, 977
NlaIV GGNNCC 3 cut(s) 129, 285, 904
NmeAIII GCCGAG 1 cut(s) 619
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 3 cut(s) 366, 679, 977
PaeI GCATGC 2 cut(s) 366, 977
PaeR7I CTCGAG 1 cut(s) 513
PasI CCCWGGG 1 cut(s) 1060
PceI AGGCCT 1 cut(s) 693
PciI ACATGT 1 cut(s) 675
PctI GAATGC 1 cut(s) 1322
PdiI GCCGGC 1 cut(s) 717
PfeI GAWTC 2 cut(s) 836, 1256
PfoI TCCNGGA 1 cut(s) 1326
PkrI GCNGC 7 cut(s) 166, 239, 271, 656, 817, 988, 1071
PleI GAGTC 2 cut(s) 751, 769
PluTI GGCGCC 1 cut(s) 131
PpsI GAGTC 2 cut(s) 751, 769
PscI ACATGT 1 cut(s) 675
PsiI TTATAA 1 cut(s) 603
Psp6I CCWGG 3 cut(s) 829, 1059, 1326
PspGI CCWGG 3 cut(s) 829, 1059, 1326
PspN4I GGNNCC 3 cut(s) 129, 285, 904
PspPI GGNCC 3 cut(s) 81, 467, 568
PstI CTGCAG 2 cut(s) 769, 948
PstNI CAGNNNCTG 2 cut(s) 845, 1231
PsuI RGATCY 3 cut(s) 509, 1202, 1228
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 2 cut(s) 802, 1298
RsaNI GTAC 2 cut(s) 801, 1297
RseI CAYNNNNRTG 1 cut(s) 1049
SatI GCNGC 7 cut(s) 165, 238, 270, 655, 816, 987, 1070
Sau3AI GATC 7 cut(s) 9, 382, 509, 577, 1202, 1228, 1270
Sau96I GGNCC 3 cut(s) 81, 467, 568
SchI GAGTC 2 cut(s) 752, 770
ScrFI CCNGG 3 cut(s) 831, 1061, 1328
SfaNI GCATC 2 cut(s) 200, 988
SfcI CTRYAG 3 cut(s) 489, 765, 944
SfoI GGCGCC 1 cut(s) 129
Sfr274I CTCGAG 1 cut(s) 513
SinI GGWCC 1 cut(s) 467
SlaI CTCGAG 1 cut(s) 513
SmiMI CAYNNNNRTG 1 cut(s) 1049
SmlI CTYRAG 1 cut(s) 513
SmoI CTYRAG 1 cut(s) 513
SphI GCATGC 2 cut(s) 366, 977
Sse9I AATT 6 cut(s) 73, 179, 311, 504, 855, 1301
SseBI AGGCCT 1 cut(s) 693
SspDI GGCGCC 1 cut(s) 127
SspMI CTAG 3 cut(s) 417, 1274, 1290
StuI AGGCCT 1 cut(s) 693
StyD4I CCNGG 3 cut(s) 829, 1059, 1326
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 5 cut(s) 551, 560, 608, 707, 1172
TaqI TCGA 4 cut(s) 306, 459, 514, 759
TaqII GACCGA 1 cut(s) 23
TasI AATT 6 cut(s) 73, 179, 311, 504, 855, 1301
TauI GCSGC 4 cut(s) 167, 240, 818, 1072
TfiI GAWTC 2 cut(s) 836, 1256
TscAI CASTG 4 cut(s) 46, 664, 789, 1368
TseI GCWGC 3 cut(s) 269, 654, 986
TspDTI ATGAA 4 cut(s) 84, 410, 520, 951
TspGWI ACGGA 3 cut(s) 108, 1169, 1224
TspRI CASTG 4 cut(s) 46, 664, 789, 1368
VpaK11BI GGWCC 1 cut(s) 467
XagI CCTNNNNNAGG 1 cut(s) 262
XapI RAATTY 4 cut(s) 73, 179, 311, 1301
XbaI TCTAGA 1 cut(s) 1289
XceI RCATGY 3 cut(s) 366, 679, 977
XhoI CTCGAG 1 cut(s) 513
XmiI GTMKAC 1 cut(s) 672
XspI CTAG 3 cut(s) 417, 1274, 1290
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.