RchiOBHm_Chr7g0176831

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013072
Physical Location & Seq
Reverse (-)
18098 .. 23727
5630 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 513 bp
ATGCTGGAAAATCCTTCATCAGCGGCAGCAGATCCAGCCGCAGTGGTGAAGCGCTACGCTCCTCCCAATCAGAGAAATCGTCCTCTTAACAGACGCAAGTCCGCAGAGCGGTTTGATCGAACTAACAATCTTCATGGGAATGATTTGGAAAAGAATCAAATTGCTTCTTCAAGAGGTACTGTTATAGATCATGGGGATGGAGGTAGCAGCAGTCTTCTAAATGAAAACTCTCATCCCTGGTTTATAGCTTTAGAGGGGTGTTGCAGCAGTCAGGCTTTCGATCTCTTGAATAATCGTTGGGCAGCCACAATGCATTGCTTCAATGATTCATCTGTAGATCTATCAGAAAGACCCGTTATGTACTCAGGAAGCGGAGCAGCATGGAGTCACTTCAAACTCCCTCATCAGTTAATGGCTCCAGCAGGGGGTGCTGGGTCACCTGTTTCTTCCATGGACTTCTTGAGTGAACTTTGCCGCTTGAAGAACAATTCCAATGTCAGTTCTGGAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.42

Weight (kDa)

7.0

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07580 AT3G07580 AT5G48335
fragaria_vesca FvH4_5g18680 FvH4_5g18680
malus_domestica MD03G1298800.v1.1
prunus_persica Prupe.8G267200_v2.0.a1
pyrus_communis pycom03g23680
rosa_chinensis RchiOBHm_Chr7g0176831
rosa_laevigata RLG00000005582
rosa_multiflora Rmu_sc0005162.1_g000005
rosa_roxburghii Rroxscaffold_3G00276380
rosa_rugosa Rorug06G0401100
rosa_samantha Rh7AG000300 Rh7BG000600 Rh7CG000300 Rh7DG000500
rosa_wichuraiana Rw7G000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 109
AciI CCGC 6 cut(s) 23, 39, 102, 109, 372, 475
AclWI GGATC 1 cut(s) 26
AfaI GTAC 2 cut(s) 178, 362
AfeI AGCGCT 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 108, 425
AgsI TTSAA 5 cut(s) 171, 289, 322, 394, 481
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
AlwI GGATC 1 cut(s) 26
Aor51HI AGCGCT 1 cut(s) 53
ApeKI GCWGC 5 cut(s) 26, 207, 264, 302, 377
AspLEI GCGC 1 cut(s) 54
AsuHPI GGTGA 2 cut(s) 58, 429
BbsI GAAGAC 1 cut(s) 206
BbvI GCAGC 5 cut(s) 38, 219, 276, 314, 389
BccI CCATC 1 cut(s) 191
BciT130I CCWGG 1 cut(s) 238
BfaI CTAG 1 cut(s) 511
BfmI CTRYAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 55
BglII AGATCT 1 cut(s) 337
BisI GCNGC 8 cut(s) 24, 27, 39, 208, 265, 303, 378, 475
BlsI GCNGC 8 cut(s) 25, 28, 40, 209, 266, 304, 379, 476
Bme1390I CCNGG 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 1 cut(s) 238
BoxI GACNNNNGTC 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 481
BsaJI CCNNGG 2 cut(s) 236, 450
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 425
Bse3DI GCAATG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 2 cut(s) 236, 450
BseGI GGATG 2 cut(s) 202, 232
BseLI CCNNNNNNNGG 2 cut(s) 108, 425
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 378
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 5 cut(s) 38, 219, 276, 314, 389
BseYI CCCAGC 1 cut(s) 431
BslI CCNNNNNNNGG 2 cut(s) 108, 425
Bsp143I GATC 5 cut(s) 31, 115, 187, 280, 337
Bsp19I CCATGG 1 cut(s) 450
BspACI CCGC 6 cut(s) 23, 39, 102, 109, 372, 475
BspCNI CTCAG 1 cut(s) 377
BspLI GGNNCC 1 cut(s) 417
BspPI GGATC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 313
BssECI CCNNGG 2 cut(s) 236, 450
BssMI GATC 5 cut(s) 31, 115, 187, 280, 337
BssT1I CCWWGG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 181
BstAPI GCANNNNNTGC 1 cut(s) 428
BstDEI CTNAG 1 cut(s) 364
BstDSI CCRYGG 1 cut(s) 450
BstEII GGTNACC 1 cut(s) 435
BstF5I GGATG 2 cut(s) 202, 232
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 5 cut(s) 34, 118, 190, 283, 340
BstMBI GATC 5 cut(s) 31, 115, 187, 280, 337
BstMWI GCNNNNNNNGC 2 cut(s) 35, 428
BstNI CCWGG 1 cut(s) 238
BstPAI GACNNNNGTC 1 cut(s) 97
BstPI GGTNACC 1 cut(s) 435
BstSCI CCNGG 1 cut(s) 236
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 5 cut(s) 38, 219, 276, 314, 389
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 2 cut(s) 31, 337
BstYI RGATCY 2 cut(s) 31, 337
BtgI CCRYGG 1 cut(s) 450
BtsCI GGATG 2 cut(s) 202, 232
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
CfoI GCGC 1 cut(s) 54
CseI GACGC 1 cut(s) 102
Csp6I GTAC 2 cut(s) 177, 361
CviAII CATG 4 cut(s) 134, 191, 381, 451
CviJI RGCY 5 cut(s) 38, 248, 275, 305, 416
CviKI_1 RGCY 5 cut(s) 38, 248, 275, 305, 416
CviQI GTAC 2 cut(s) 177, 361
DdeI CTNAG 1 cut(s) 364
DpnI GATC 5 cut(s) 33, 117, 189, 282, 339
DpnII GATC 5 cut(s) 31, 115, 187, 280, 337
Eco130I CCWWGG 1 cut(s) 450
Eco47III AGCGCT 1 cut(s) 53
Eco91I GGTNACC 1 cut(s) 435
EcoO65I GGTNACC 1 cut(s) 435
EcoRII CCWGG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 450
EcoT22I ATGCAT 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 4 cut(s) 137, 194, 384, 454
FaiI YATR 7 cut(s) 135, 185, 192, 245, 359, 382, 452
FatI CATG 4 cut(s) 133, 190, 380, 450
Fnu4HI GCNGC 8 cut(s) 24, 27, 39, 208, 265, 303, 378, 475
FokI GGATG 2 cut(s) 209, 219
Fsp4HI GCNGC 8 cut(s) 24, 27, 39, 208, 265, 303, 378, 475
FspBI CTAG 1 cut(s) 511
GlaI GCGC 1 cut(s) 53
GluI GCNGC 8 cut(s) 24, 27, 39, 208, 265, 303, 378, 475
GsaI CCCAGC 1 cut(s) 435
GsuI CTGGAG 1 cut(s) 402
HaeII RGCGCY 1 cut(s) 55
HgaI GACGC 1 cut(s) 102
HhaI GCGC 1 cut(s) 54
Hin1II CATG 4 cut(s) 137, 194, 384, 454
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 4 cut(s) 154, 326, 385, 507
HphI GGTGA 2 cut(s) 58, 429
Hpy166II GTNNAC 1 cut(s) 467
Hpy188I TCNGA 2 cut(s) 72, 346
Hpy188III TCNNGA 5 cut(s) 171, 286, 366, 460, 504
Hpy8I GTNNAC 1 cut(s) 467
HpyAV CCTTC 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 264, 313
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 428
HpyF3I CTNAG 1 cut(s) 364
Hsp92II CATG 4 cut(s) 137, 194, 384, 454
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 5 cut(s) 31, 115, 187, 280, 337
LmnI GCTCC 3 cut(s) 64, 374, 421
Lsp1109I GCAGC 5 cut(s) 38, 219, 276, 314, 389
MaeI CTAG 1 cut(s) 511
MaeIII GTNAC 2 cut(s) 386, 435
MalI GATC 5 cut(s) 33, 117, 189, 282, 339
MbiI CCGCTC 1 cut(s) 109
MboI GATC 5 cut(s) 31, 115, 187, 280, 337
MboII GAAGA 5 cut(s) 122, 159, 206, 438, 493
MflI RGATCY 2 cut(s) 31, 337
MluCI AATT 2 cut(s) 159, 487
MlyI GAGTC 1 cut(s) 394
MnlI CCTC 6 cut(s) 72, 93, 167, 194, 247, 411
Mph1103I ATGCAT 1 cut(s) 315
MseI TTAA 2 cut(s) 87, 410
MslI CAYNNNNRTG 2 cut(s) 138, 195
MspA1I CMGCKG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 238
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 2 cut(s) 35, 428
NcoI CCATGG 1 cut(s) 450
NdeII GATC 5 cut(s) 31, 115, 187, 280, 337
NlaIII CATG 4 cut(s) 137, 194, 384, 454
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 2 cut(s) 386, 435
NsiI ATGCAT 1 cut(s) 315
PfeI GAWTC 3 cut(s) 154, 326, 507
PkrI GCNGC 8 cut(s) 25, 28, 40, 209, 266, 304, 379, 476
PleI GAGTC 1 cut(s) 393
PpsI GAGTC 1 cut(s) 393
PshAI GACNNNNGTC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 236
PspEI GGTNACC 1 cut(s) 435
PspFI CCCAGC 1 cut(s) 431
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 417
PsuI RGATCY 2 cut(s) 31, 337
RsaI GTAC 2 cut(s) 178, 362
RsaNI GTAC 2 cut(s) 177, 361
RseI CAYNNNNRTG 2 cut(s) 138, 195
SaqAI TTAA 2 cut(s) 87, 410
SatI GCNGC 8 cut(s) 24, 27, 39, 208, 265, 303, 378, 475
Sau3AI GATC 5 cut(s) 31, 115, 187, 280, 337
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 1 cut(s) 238
SetI ASST 4 cut(s) 178, 205, 250, 442
SfcI CTRYAG 1 cut(s) 333
SmiMI CAYNNNNRTG 2 cut(s) 138, 195
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
Sse9I AATT 2 cut(s) 159, 487
SsiI CCGC 6 cut(s) 23, 39, 102, 109, 372, 475
SspMI CTAG 1 cut(s) 511
StyD4I CCNGG 1 cut(s) 236
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 2 cut(s) 118, 279
TasI AATT 2 cut(s) 159, 487
TatI WGTACW 1 cut(s) 360
TauI GCSGC 3 cut(s) 26, 41, 477
TfiI GAWTC 3 cut(s) 154, 326, 507
Tru1I TTAA 2 cut(s) 87, 410
Tru9I TTAA 2 cut(s) 87, 410
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 2 cut(s) 386, 435
TseI GCWGC 5 cut(s) 26, 207, 264, 302, 377
Tsp45I GTSAC 2 cut(s) 386, 435
TspDTI ATGAA 4 cut(s) 6, 122, 237, 318
TspRI CASTG 1 cut(s) 48
XspI CTAG 1 cut(s) 511
Zsp2I ATGCAT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.