RchiOBHm_Chr7g0216041

WPP domain-interacting tail-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010612
Physical Location & Seq
Reverse (-)
33704373 .. 33715046
10674 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
ATGCAGTGGCAACTGTTGGAGCTAGCCAGGAGAAACAAATTGAATTCGATTATCATGCATATGGAAAATGTGATAAAGGATCTAAAGCAGAAGGTTTCAAACGCTGAAAGTCGGGCCGACAGTGTAGAGGAAAAGTGTATAATAATATCAAAATCCAATGCAGCACTAAATGATAAAGTAAGCATTCTGACGGGTAGATTGAAATGCATGGAGGCAGCTTTGTATCAAGCGGAGGAAGCAAAAACAGCTATTGCAACTGTTATTGAGTACATTGCAACTGAATTTGGTCACATATTTCAAGCAGTTTTCATTGGAGCTGCAATTTTCCTGATAGATGTTCAAAAATTTGGGCAGTTGGGAAAGAACCTATATCACAAGGTGATAATTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.64

Weight (kDa)

8.55

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 230
AclWI GGATC 1 cut(s) 87
AcsI RAATTY 3 cut(s) 43, 281, 344
AdeI CACNNNGTG 1 cut(s) 379
AfaI GTAC 1 cut(s) 269
AgsI TTSAA 5 cut(s) 43, 99, 202, 299, 341
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 4 cut(s) 22, 218, 248, 317
AluI AGCT 4 cut(s) 22, 218, 248, 317
AlwI GGATC 1 cut(s) 87
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 3 cut(s) 161, 215, 317
ApoI RAATTY 3 cut(s) 43, 281, 344
AspS9I GGNCC 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 391
AsuNHI GCTAGC 1 cut(s) 22
BbvI GCAGC 3 cut(s) 173, 227, 304
BcgI CGANNNNNNTGC 2 cut(s) 37, 71
BciT130I CCWGG 1 cut(s) 28
BfaI CTAG 1 cut(s) 23
BisI GCNGC 3 cut(s) 162, 216, 318
BlsI GCNGC 3 cut(s) 163, 217, 319
Bme1390I CCNGG 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 28
BmtI GCTAGC 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 28
BseMI GCAATG 1 cut(s) 270
BseXI GCAGC 3 cut(s) 173, 227, 304
BshFI GGCC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 183
BsnI GGCC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 1 cut(s) 230
BspANI GGCC 1 cut(s) 116
BspOI GCTAGC 1 cut(s) 26
BspPI GGATC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 270
BssMI GATC 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 28
Bst4CI ACNGT 3 cut(s) 15, 122, 259
BstC8I GCNNGC 1 cut(s) 24
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 236, 245
BstNI CCWGG 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 26
BstV1I GCAGC 3 cut(s) 173, 227, 304
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 1 cut(s) 116
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 2 cut(s) 11, 127
Cac8I GCNNGC 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 268
CviAII CATG 2 cut(s) 55, 208
CviJI RGCY 6 cut(s) 22, 26, 116, 218, 248, 317
CviKI_1 RGCY 6 cut(s) 22, 26, 116, 218, 248, 317
CviQI GTAC 1 cut(s) 268
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
DraIII CACNNNGTG 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 26
EcoT22I ATGCAT 2 cut(s) 60, 209
FaeI CATG 2 cut(s) 58, 211
FaiI YATR 7 cut(s) 56, 60, 62, 140, 209, 293, 370
FatI CATG 2 cut(s) 54, 207
FauNDI CATATG 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 162, 216, 318
Fsp4HI GCNGC 3 cut(s) 162, 216, 318
FspBI CTAG 1 cut(s) 23
GluI GCNGC 3 cut(s) 162, 216, 318
HaeIII GGCC 1 cut(s) 116
Hin1II CATG 2 cut(s) 58, 211
HphI GGTGA 1 cut(s) 391
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 1 cut(s) 328
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 3 cut(s) 15, 122, 259
HpyCH4V TGCA 7 cut(s) 4, 58, 161, 207, 254, 275, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 245
Hsp92II CATG 2 cut(s) 58, 211
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 2 cut(s) 19, 314
LpnPI CCDG 3 cut(s) 13, 40, 341
Lsp1109I GCAGC 3 cut(s) 173, 227, 304
MaeI CTAG 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 287
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MflI RGATCY 1 cut(s) 79
MluCI AATT 6 cut(s) 38, 43, 281, 321, 344, 384
MnlI CCTC 3 cut(s) 121, 205, 226
Mph1103I ATGCAT 2 cut(s) 60, 209
MslI CAYNNNNRTG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 28
Mva1269I GAATGC 1 cut(s) 183
MvaI CCWGG 1 cut(s) 28
MwoI GCNNNNNNNGC 2 cut(s) 236, 245
NdeI CATATG 1 cut(s) 60
NdeII GATC 1 cut(s) 79
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 2 cut(s) 58, 211
NmuCI GTSAC 1 cut(s) 287
NsiI ATGCAT 2 cut(s) 60, 209
PctI GAATGC 1 cut(s) 183
PkrI GCNGC 3 cut(s) 163, 217, 319
Psp6I CCWGG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 26
PspPI GGNCC 1 cut(s) 114
PsuI RGATCY 1 cut(s) 79
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 59
SatI GCNGC 3 cut(s) 162, 216, 318
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 28
SetI ASST 7 cut(s) 24, 96, 220, 250, 319, 369, 381
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 6 cut(s) 38, 43, 281, 321, 344, 384
SsiI CCGC 1 cut(s) 230
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 26
TaaI ACNGT 3 cut(s) 15, 122, 259
TaqI TCGA 1 cut(s) 47
TasI AATT 6 cut(s) 38, 43, 281, 321, 344, 384
TatI WGTACW 1 cut(s) 267
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 3 cut(s) 161, 215, 317
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 298
TspRI CASTG 1 cut(s) 127
XapI RAATTY 3 cut(s) 43, 281, 344
XspI CTAG 1 cut(s) 23
Zsp2I ATGCAT 2 cut(s) 60, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.