Rroxscaffold_5G00348630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0010612
Physical Location & Seq
Reverse (-)
20959061 .. 20964769
5709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00348630.1

Sequence Viewer

Length: 795 bp
ATGAGAGATGTTATAGCGTTGAGGAGTTTGTCAAAGATGAAAAATGTGATTGGGGCACAGACAATTGACCTCCAAACAAGTAGTTTTGAGTCCTGGAAATGGAAGGCAAGGAGTTATATGCGCATAAATGAGAATAAATGGAGAAATGAAGTTTTCACGGTTCTACCGGAGAAGGAATCTCGGTTGAATGATAGAATTCAAAAGAAATTCAAGGGAACCCTAGCCTTCGCTGCTCACTATATAAAGGAGATTTGTGAAGCTCTTCGGACACCACAAAATTCAGAATCAAAATCCACAAACACTTCCCTTTCTCTTCCAAGTTTCGGCAATTTCAAGAAGTTCCAAGTTCAAGGCCGTGAGCAATCCTCCTCTCCATTCAAGCATCCTTGCTGTAGCTCTCATCCATTCCACCACCTTTTGAAGCTTCTTGCGTTCTTGAAGATCAAAAACCAAATCATCGCCGTTTTTACCAACTCCCCCAATTTCAATTGTGGTTGCGGGACTTCAAGTGACAATTGGAATGCGGTGCTCAATTCCAAATGGACTTCACAAAGCAAAGGTGACAACAAGACTATTTTGGACGGGAATCGGTGCTCAATCCGGCCAACAAGGTCTCGACCAATCATGTTCTCGGCACCGGAAATGGGAAGCTCAATGGGAGAGAGGAAATCAACCCAGATTGAGCATTACCAGCTCTTCTTAAGTTCCTCAAAAACTGCTTCCGGCTGGAAGCAAAAGCTGAAATGGTTTTATGAGCAATGCACAGCTCTCAGTTTCACTTCTATTTGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

30.26

Weight (kDa)

9.89

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 122
AccB1I GGYRCC 1 cut(s) 634
AciI CCGC 2 cut(s) 498, 524
AcoI YGGCCR 1 cut(s) 602
AcsI RAATTY 3 cut(s) 195, 206, 277
AfiI CCNNNNNNNGG 3 cut(s) 99, 323, 644
AflII CTTAAG 1 cut(s) 700
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 7 cut(s) 260, 396, 424, 651, 694, 739, 767
AluI AGCT 7 cut(s) 260, 396, 424, 651, 694, 739, 767
Alw21I GWGCWC 2 cut(s) 531, 596
Alw26I GTCTC 1 cut(s) 618
AoxI GGCC 2 cut(s) 352, 602
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 3 cut(s) 195, 206, 277
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 572
BaeGI GKGCMC 1 cut(s) 58
BanI GGYRCC 1 cut(s) 634
Bbv12I GWGCWC 2 cut(s) 531, 596
BbvI GCAGC 1 cut(s) 217
BceAI ACGGC 2 cut(s) 339, 446
BciT130I CCWGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 618
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 391
BfrI CTTAAG 1 cut(s) 700
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
Bme1390I CCNGG 1 cut(s) 94
BmiI GGNNCC 2 cut(s) 217, 636
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 391
BplI GAGNNNNNCTC 2 cut(s) 350, 382
BsaI GGTCTC 1 cut(s) 618
BsaWI WCCGGW 2 cut(s) 166, 637
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 323, 644
Bse3DI GCAATG 1 cut(s) 764
BseBI CCWGG 1 cut(s) 94
BseGI GGATG 2 cut(s) 382, 400
BseLI CCNNNNNNNGG 3 cut(s) 99, 323, 644
BseMI GCAATG 1 cut(s) 764
BseMII CTCAG 1 cut(s) 784
BseRI GAGGAG 2 cut(s) 37, 358
BseSI GKGCMC 1 cut(s) 58
BseXI GCAGC 1 cut(s) 217
BshFI GGCC 2 cut(s) 354, 604
BshNI GGYRCC 1 cut(s) 634
BsiHKAI GWGCWC 2 cut(s) 531, 596
BsiSI CCGG 4 cut(s) 167, 601, 638, 723
BslFI GGGAC 1 cut(s) 514
BslI CCNNNNNNNGG 3 cut(s) 99, 323, 644
BsmAI GTCTC 1 cut(s) 618
BsmFI GGGAC 1 cut(s) 514
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 2 cut(s) 354, 604
Bso31I GGTCTC 1 cut(s) 618
Bsp1286I GDGCHC 3 cut(s) 58, 531, 596
Bsp143I GATC 1 cut(s) 441
BspACI CCGC 2 cut(s) 498, 524
BspANI GGCC 2 cut(s) 354, 604
BspCNI CTCAG 1 cut(s) 783
BspLI GGNNCC 2 cut(s) 217, 636
BspQI GCTCTTC 2 cut(s) 267, 701
BspT107I GGYRCC 1 cut(s) 634
BspTI CTTAAG 1 cut(s) 700
BspTNI GGTCTC 1 cut(s) 618
BsrDI GCAATG 1 cut(s) 764
BssMI GATC 1 cut(s) 441
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 3 cut(s) 267, 318, 701
BstAFI CTTAAG 1 cut(s) 700
BstDEI CTNAG 1 cut(s) 770
BstF5I GGATG 2 cut(s) 382, 400
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 1 cut(s) 444
BstMAI GTCTC 1 cut(s) 618
BstMBI GATC 1 cut(s) 441
BstMWI GCNNNNNNNGC 2 cut(s) 230, 691
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 391
BstSLI GKGCMC 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 217
BsuRI GGCC 2 cut(s) 354, 604
BtgZI GCGATG 1 cut(s) 442
BtsCI GGATG 2 cut(s) 382, 400
CfoI GCGC 1 cut(s) 123
CviAII CATG 1 cut(s) 625
DdeI CTNAG 1 cut(s) 770
DpnI GATC 1 cut(s) 443
DpnII GATC 1 cut(s) 441
EaeI YGGCCR 1 cut(s) 602
Eam1104I CTCTTC 3 cut(s) 267, 318, 701
EarI CTCTTC 3 cut(s) 267, 318, 701
Eco31I GGTCTC 1 cut(s) 618
EcoRI GAATTC 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 92
FaeI CATG 1 cut(s) 628
FaiI YATR 8 cut(s) 14, 117, 119, 125, 240, 242, 626, 753
FaqI GGGAC 1 cut(s) 514
FatI CATG 1 cut(s) 624
FauI CCCGC 1 cut(s) 491
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 2 cut(s) 369, 387
Fsp4HI GCNGC 1 cut(s) 231
FspAI RTGCGCAY 1 cut(s) 122
FspBI CTAG 1 cut(s) 221
FspI TGCGCA 1 cut(s) 122
GlaI GCGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 354, 604
HapII CCGG 4 cut(s) 167, 601, 638, 723
HhaI GCGC 1 cut(s) 123
Hin1II CATG 1 cut(s) 628
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 4 cut(s) 89, 176, 284, 586
HpaII CCGG 4 cut(s) 167, 601, 638, 723
HphI GGTGA 1 cut(s) 572
Hpy188I TCNGA 2 cut(s) 267, 283
Hpy188III TCNNGA 3 cut(s) 334, 436, 615
HpyAV CCTTC 3 cut(s) 97, 166, 235
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 762
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 691
HpyF3I CTNAG 1 cut(s) 770
Hsp92II CATG 1 cut(s) 628
HspAI GCGC 1 cut(s) 121
Kzo9I GATC 1 cut(s) 441
LguI GCTCTTC 2 cut(s) 267, 701
LpnPI CCDG 9 cut(s) 79, 106, 180, 614, 651, 689, 704, 712, 736
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 1 cut(s) 391
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 2 cut(s) 509, 560
MalI GATC 1 cut(s) 443
MboI GATC 1 cut(s) 441
MboII GAAGA 4 cut(s) 254, 305, 451, 688
MfeI CAATTG 3 cut(s) 63, 487, 514
MhlI GDGCHC 3 cut(s) 58, 531, 596
MluCI AATT 9 cut(s) 63, 195, 206, 277, 328, 481, 487, 514, 532
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 6 cut(s) 15, 80, 376, 379, 657, 718
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 1 cut(s) 701
MspCI CTTAAG 1 cut(s) 700
MspI CCGG 4 cut(s) 167, 601, 638, 723
MspR9I CCNGG 1 cut(s) 94
MunI CAATTG 3 cut(s) 63, 487, 514
Mva1269I GAATGC 1 cut(s) 526
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 230, 691
NdeII GATC 1 cut(s) 441
NlaIII CATG 1 cut(s) 628
NlaIV GGNNCC 2 cut(s) 217, 636
NmeAIII GCCGAG 1 cut(s) 611
NmuCI GTSAC 2 cut(s) 509, 560
NsbI TGCGCA 1 cut(s) 122
PciSI GCTCTTC 2 cut(s) 267, 701
PctI GAATGC 1 cut(s) 526
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 3 cut(s) 176, 284, 586
PfoI TCCNGGA 1 cut(s) 92
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 2 cut(s) 217, 636
SapI GCTCTTC 2 cut(s) 267, 701
SaqAI TTAA 1 cut(s) 701
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 1 cut(s) 441
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 3 cut(s) 58, 531, 596
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 391
SmlI CTYRAG 1 cut(s) 700
SmoI CTYRAG 1 cut(s) 700
Sse9I AATT 9 cut(s) 63, 195, 206, 277, 328, 481, 487, 514, 532
SsiI CCGC 2 cut(s) 498, 524
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 92
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 1 cut(s) 616
TasI AATT 9 cut(s) 63, 195, 206, 277, 328, 481, 487, 514, 532
TfiI GAWTC 3 cut(s) 176, 284, 586
Tru1I TTAA 1 cut(s) 701
Tru9I TTAA 1 cut(s) 701
TseFI GTSAC 2 cut(s) 509, 560
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 2 cut(s) 509, 560
TspDTI ATGAA 2 cut(s) 53, 162
Vha464I CTTAAG 1 cut(s) 700
XapI RAATTY 3 cut(s) 195, 206, 277
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.