Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007828.1

Orthogroup ID

OG0010612

Physical Location & Seq

Genomic Coordinates Forward (+)

12845 .. 17083

Gene Structure 4239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007828.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgaaaggcaagcttgatgagactagggctacgcttgaggtgaaggagtccagagttgctgaactggaagatactggtaacattagaaagtcttttaaagaagaattaggtagtatgaagtcgtcgcctggcaagcagatgacggtgacgaaaccttttcggcggattttgggacaactcggatctgtttctcgatccaaatcttggccaagtcttccttggggaacccgacggcgacgaagactcaaggtggttgaggttgaggtcggcggtggtgcggtggaggaagaagccgcaggagaccaactcgtcggcccaaagcttgaagacctgcctgtccgatatcgagttcaagatctgccgggaccggtcgccggattccggtcaccagtcaccggttgccaacgccctgccactggtcaccggaggccggcaaggcaggcagagagctatagaacacaccatcacaacgcaaagagagaaatccaagatctgaagcagaatcgcctcaaccagggtcaggtgctctgtgcaatctttcttactgcttttccgttgggggttgtcgataaactctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006996 GO:0006997 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046982 GO:0046983 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.43

Weight (kDa)

10.2

Isoelectric Point (pI)

60.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010612)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0359781 RchiOBHm_Chr2g0138061 RchiOBHm_Chr2g0148721 RchiOBHm_Chr7g0216041
rosa_laevigata	RLG00000028710
rosa_multiflora	Rmu_sc0000124.1_g000025 Rmu_sc0007828.1_g000006
rosa_roxburghii	Rroxscaffold_1G00070670 Rroxscaffold_3G00243710 Rroxscaffold_4G00286700 Rroxscaffold_4G00287320 Rroxscaffold_5G00348630 Rroxscaffold_5G00379830 Rroxscaffold_6G00391350
rosa_samantha	Rh2AG198900 Rh2CG110500 Rh2DG206500 Rh6BG130400 Rh6CG128600 Rh6DG115800 Rh7BG287800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	308, 335
Acc36I	ACCTGC	1 cut(s)	339
AccB7I	CCANNNNNTGG	1 cut(s)	204
AciI	CCGC	4 cut(s)	163, 270, 278, 294
AclWI	GGATC	2 cut(s)	189, 190
AcoI	YGGCCR	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	515
AfiI	CCNNNNNNNGG	8 cut(s)	204, 374, 381, 395, 416, 430, 514, 520
AgeI	ACCGGT	2 cut(s)	367, 395
AgsI	TTSAA	2 cut(s)	326, 353
AjnI	CCWGG	2 cut(s)	127, 513
AluBI	AGCT	3 cut(s)	13, 322, 450
AluI	AGCT	3 cut(s)	13, 322, 450
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	2 cut(s)	14, 294
AlwI	GGATC	2 cut(s)	189, 190
AoxI	GGCC	3 cut(s)	206, 313, 428
AsiGI	ACCGGT	2 cut(s)	367, 395
AspS9I	GGNCC	2 cut(s)	314, 365
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	5 cut(s)	52, 157, 378, 385, 413
AvaII	GGWCC	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	208
BbsI	GAAGAC	3 cut(s)	206, 247, 333
Bbv12I	GWGCWC	1 cut(s)	528
BccI	CCATC	1 cut(s)	471
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	2 cut(s)	129, 515
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	14, 294
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	451
BfuAI	ACCTGC	1 cut(s)	339
BglI	GCCNNNNNGGC	1 cut(s)	436
BglII	AGATCT	2 cut(s)	355, 490
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	3 cut(s)	129, 363, 515
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	2 cut(s)	314, 365
BmiI	GGNNCC	2 cut(s)	226, 366
BmrFI	CCNGG	3 cut(s)	129, 363, 515
BpiI	GAAGAC	3 cut(s)	206, 247, 333
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
BpuEI	CTTGAG	2 cut(s)	56, 230
BpuMI	CCSGG	1 cut(s)	363
BsaBI	GATNNNNATC	1 cut(s)	199
BsaI	GGTCTC	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	218, 514
BsaWI	WCCGGW	4 cut(s)	367, 381, 395, 423
Bsc4I	CCNNNNNNNGG	8 cut(s)	204, 374, 381, 395, 416, 430, 514, 520
Bse118I	RCCGGY	3 cut(s)	367, 395, 430
Bse1I	ACTGG	4 cut(s)	69, 79, 389, 421
Bse8I	GATNNNNATC	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	129, 515
BseDI	CCNNGG	2 cut(s)	218, 514
BseJI	GATNNNNATC	1 cut(s)	199
BseLI	CCNNNNNNNGG	8 cut(s)	204, 374, 381, 395, 416, 430, 514, 520
BseNI	ACTGG	4 cut(s)	69, 79, 389, 421
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	3 cut(s)	208, 315, 430
BshTI	ACCGGT	2 cut(s)	367, 395
BsiEI	CGRYCG	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	528
BsiSI	CCGG	7 cut(s)	362, 368, 375, 382, 396, 424, 431
BslFI	GGGAC	2 cut(s)	186, 378
BslI	CCNNNNNNNGG	8 cut(s)	204, 374, 381, 395, 416, 430, 514, 520
BsmAI	GTCTC	2 cut(s)	14, 294
BsmFI	GGGAC	2 cut(s)	186, 378
BsnI	GGCC	3 cut(s)	208, 315, 430
Bso31I	GGTCTC	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp143I	GATC	4 cut(s)	182, 194, 355, 490
BspACI	CCGC	4 cut(s)	163, 270, 278, 294
BspANI	GGCC	3 cut(s)	208, 315, 430
BspLI	GGNNCC	2 cut(s)	226, 366
BspMI	ACCTGC	1 cut(s)	339
BspPI	GGATC	2 cut(s)	189, 190
BspTNI	GGTCTC	1 cut(s)	294
BsrFI	RCCGGY	3 cut(s)	367, 395, 430
BsrI	ACTGG	4 cut(s)	69, 79, 389, 421
BssAI	RCCGGY	3 cut(s)	367, 395, 430
BssECI	CCNNGG	2 cut(s)	218, 514
BssMI	GATC	4 cut(s)	182, 194, 355, 490
BssT1I	CCWWGG	1 cut(s)	218
Bst2UI	CCWGG	2 cut(s)	129, 515
Bst4CI	ACNGT	1 cut(s)	145
BstC8I	GCNNGC	4 cut(s)	11, 134, 432, 441
BstEII	GGTNACC	2 cut(s)	384, 419
BstENI	CCTNNNNNAGG	1 cut(s)	512
BstKTI	GATC	4 cut(s)	185, 197, 358, 493
BstMAI	GTCTC	2 cut(s)	14, 294
BstMBI	GATC	4 cut(s)	182, 194, 355, 490
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 436, 440
BstNI	CCWGG	2 cut(s)	129, 515
BstPI	GGTNACC	2 cut(s)	384, 419
BstSCI	CCNGG	3 cut(s)	127, 361, 513
BstSFI	CTRYAG	1 cut(s)	451
BstV2I	GAAGAC	3 cut(s)	206, 247, 333
BstX2I	RGATCY	3 cut(s)	182, 355, 490
BstYI	RGATCY	3 cut(s)	182, 355, 490
BsuRI	GGCC	3 cut(s)	208, 315, 430
BtsIMutI	CAGTG	1 cut(s)	414
BveI	ACCTGC	1 cut(s)	339
Cac8I	GCNNGC	4 cut(s)	11, 134, 432, 441
Cfr10I	RCCGGY	3 cut(s)	367, 395, 430
Cfr13I	GGNCC	2 cut(s)	314, 365
CspAI	ACCGGT	2 cut(s)	367, 395
CviJI	RGCY	8 cut(s)	13, 29, 208, 293, 315, 322, 430, 450
CviKI_1	RGCY	8 cut(s)	13, 29, 208, 293, 315, 322, 430, 450
DpnI	GATC	4 cut(s)	184, 196, 357, 492
DpnII	GATC	4 cut(s)	182, 194, 355, 490
DraI	TTTAAA	1 cut(s)	97
DrdI	GACNNNNNNGTC	2 cut(s)	308, 335
DseDI	GACNNNNNNGTC	2 cut(s)	308, 335
EaeI	YGGCCR	1 cut(s)	206
EciI	GGCGGA	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	218
Eco31I	GGTCTC	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	515
Eco91I	GGTNACC	2 cut(s)	384, 419
EcoNI	CCTNNNNNAGG	1 cut(s)	512
EcoO65I	GGTNACC	2 cut(s)	384, 419
EcoRII	CCWGG	2 cut(s)	127, 513
EcoRV	GATATC	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaiI	YATR	2 cut(s)	116, 453
FalI	AAGNNNNNCTT	3 cut(s)	29, 202, 234
FaqI	GGGAC	2 cut(s)	186, 378
Fnu4HI	GCNGC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	1 cut(s)	294
HaeIII	GGCC	3 cut(s)	208, 315, 430
HapII	CCGG	7 cut(s)	362, 368, 375, 382, 396, 424, 431
HindIII	AAGCTT	2 cut(s)	11, 320
HinfI	GANTC	4 cut(s)	47, 243, 378, 502
HpaII	CCGG	7 cut(s)	362, 368, 375, 382, 396, 424, 431
HphI	GGTGA	5 cut(s)	52, 157, 378, 385, 413
Hpy188I	TCNGA	4 cut(s)	182, 341, 495, 578
Hpy188III	TCNNGA	3 cut(s)	51, 192, 353
Hpy99I	CGWCG	4 cut(s)	127, 234, 240, 314
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	1 cut(s)	533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 436, 440
KroI	GCCGGC	1 cut(s)	430
KroNI	GCCGGC	1 cut(s)	432
Kzo9I	GATC	4 cut(s)	182, 194, 355, 490
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	5 cut(s)	77, 145, 384, 391, 419
MalI	GATC	4 cut(s)	184, 196, 357, 492
MboI	GATC	4 cut(s)	182, 194, 355, 490
MboII	GAAGA	6 cut(s)	80, 113, 206, 252, 299, 338
MflI	RGATCY	3 cut(s)	182, 355, 490
MhlI	GDGCHC	1 cut(s)	528
MlsI	TGGCCA	1 cut(s)	208
MluCI	AATT	1 cut(s)	104
MluNI	TGGCCA	1 cut(s)	208
MlyI	GAGTC	2 cut(s)	56, 237
MnlI	CCTC	6 cut(s)	31, 250, 256, 277, 420, 518
Mox20I	TGGCCA	1 cut(s)	208
MroNI	GCCGGC	1 cut(s)	430
MscI	TGGCCA	1 cut(s)	208
MseI	TTAA	1 cut(s)	96
Msp20I	TGGCCA	1 cut(s)	208
MspI	CCGG	7 cut(s)	362, 368, 375, 382, 396, 424, 431
MspR9I	CCNGG	3 cut(s)	129, 363, 515
MvaI	CCWGG	2 cut(s)	129, 515
MwoI	GCNNNNNNNGC	3 cut(s)	133, 436, 440
NaeI	GCCGGC	1 cut(s)	432
NciI	CCSGG	1 cut(s)	363
NdeII	GATC	4 cut(s)	182, 194, 355, 490
NgoMIV	GCCGGC	1 cut(s)	430
NlaIV	GGNNCC	2 cut(s)	226, 366
NmuCI	GTSAC	4 cut(s)	145, 384, 391, 419
PdiI	GCCGGC	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	378, 502
PflMI	CCANNNNNTGG	1 cut(s)	204
PinAI	ACCGGT	2 cut(s)	367, 395
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	2 cut(s)	55, 237
PpsI	GAGTC	2 cut(s)	55, 237
Psp6I	CCWGG	2 cut(s)	127, 513
PspEI	GGTNACC	2 cut(s)	384, 419
PspGI	CCWGG	2 cut(s)	127, 513
PspN4I	GGNNCC	2 cut(s)	226, 366
PspPI	GGNCC	2 cut(s)	314, 365
PsuI	RGATCY	3 cut(s)	182, 355, 490
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	4 cut(s)	182, 194, 355, 490
Sau96I	GGNCC	2 cut(s)	314, 365
SchI	GAGTC	2 cut(s)	56, 237
ScrFI	CCNGG	3 cut(s)	129, 363, 515
SduI	GDGCHC	1 cut(s)	528
SfcI	CTRYAG	1 cut(s)	451
SinI	GGWCC	1 cut(s)	365
SmlI	CTYRAG	2 cut(s)	35, 245
SmoI	CTYRAG	2 cut(s)	35, 245
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	4 cut(s)	163, 270, 278, 294
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	3 cut(s)	127, 361, 513
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	145
TaqI	TCGA	3 cut(s)	193, 346, 567
TasI	AATT	1 cut(s)	104
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	2 cut(s)	378, 502
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	4 cut(s)	145, 384, 391, 419
Tsp45I	GTSAC	4 cut(s)	145, 384, 391, 419
TspDTI	ATGAA	2 cut(s)	17, 131
TspGWI	ACGGA	1 cut(s)	543
TspRI	CASTG	1 cut(s)	421
Van91I	CCANNNNNTGG	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	365
XagI	CCTNNNNNAGG	1 cut(s)	512
XcmI	CCANNNNNNNNNTGG	1 cut(s)	216
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.