Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010612

Physical Location & Seq

Genomic Coordinates Forward (+)

9247420 .. 9252422

Gene Structure 5003 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00391350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTTCCTGTTTCCTACGGAGAAAATTGTAAACGAAGTTGTCCTGATTATTGGAGGTCTTCAAGTCCTTCAACATAACATGTGGATTGATGTACCCCCTGTACCGGGTGCCCTAGTGGTTAACATTGGAGGATTATGTGATATGGGAGGCTTTGTGAAGACATTCAAGACACCACAAAATTCAAAATCAAAAGCCACAAACACTCCCCTTTCTCTTCCAAGTTTCGGCAACTTCAAGAACTCCAAAGTTCAAGGCCGTGAAGCATCCATTCATCCATTCAAGCATCCTTGCCATAGCACTCATCCAGTCCATCACCTTTTGAAGCTTCTTGCGTCCTTGAAGATCGAAAAGGCGGTGAAGACTTCGCTGCAGAAGTCGTCGCCCGGCGAGTCGATGACGGTGACGAAACCTTTCCGGAGGATTTTAGGCCCTCTCGGATCTGTTTCTCGGTCCGAATCTTGGCCGGGTCTTCCTTGGGGAACCCGACGGCGAAGAAGACGTAAGGTGGTTGAGGTTGAGGTCCGCAGTGGTGCGGTGGAGGAAGAAGCCGCGGGAGACAAGCTCGTCGGCCCAAAGCTTCAAGATCTGCCGATCCGATATCGAGTTTCTTCGTCCCCGTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

208

Amino Acids

22.9

Weight (kDa)

10.29

Isoelectric Point (pI)

62.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010612)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0359781 RchiOBHm_Chr2g0138061 RchiOBHm_Chr2g0148721 RchiOBHm_Chr7g0216041
rosa_laevigata	RLG00000028710
rosa_multiflora	Rmu_sc0000124.1_g000025 Rmu_sc0007828.1_g000006
rosa_roxburghii	Rroxscaffold_1G00070670 Rroxscaffold_3G00243710 Rroxscaffold_4G00286700 Rroxscaffold_4G00287320 Rroxscaffold_5G00348630 Rroxscaffold_5G00379830 Rroxscaffold_6G00391350
rosa_samantha	Rh2AG198900 Rh2CG110500 Rh2DG206500 Rh6BG130400 Rh6CG128600 Rh6DG115800 Rh7BG287800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	563
AccB1I	GGYRCC	1 cut(s)	107
AccII	CGCG	1 cut(s)	551
AccIII	TCCGGA	1 cut(s)	414
AciI	CCGC	5 cut(s)	353, 523, 533, 549, 551
AclWI	GGATC	2 cut(s)	445, 586
AcoI	YGGCCR	1 cut(s)	461
AcsI	RAATTY	1 cut(s)	178
AfaI	GTAC	2 cut(s)	93, 102
AfiI	CCNNNNNNNGG	4 cut(s)	103, 104, 224, 459
AflIII	ACRYGT	1 cut(s)	78
AluBI	AGCT	3 cut(s)	325, 562, 577
AluI	AGCT	3 cut(s)	325, 562, 577
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	2 cut(s)	445, 586
Aor13HI	TCCGGA	1 cut(s)	414
AoxI	GGCC	4 cut(s)	253, 427, 461, 568
ApeKI	GCWGC	1 cut(s)	367
ApoI	RAATTY	1 cut(s)	178
Asp700I	GAANNNNTTC	2 cut(s)	161, 410
AspS9I	GGNCC	4 cut(s)	428, 450, 520, 569
AsuC2I	CCSGG	3 cut(s)	105, 384, 465
AsuHPI	GGTGA	3 cut(s)	305, 367, 412
AvaII	GGWCC	2 cut(s)	450, 520
BaeGI	GKGCMC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	107
BbsI	GAAGAC	5 cut(s)	50, 164, 365, 461, 502
BbvI	GCAGC	1 cut(s)	354
BccI	CCATC	1 cut(s)	318
BceAI	ACGGC	2 cut(s)	240, 503
BcnI	CCSGG	3 cut(s)	105, 384, 465
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	1 cut(s)	113
BfmI	CTRYAG	1 cut(s)	368
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	2 cut(s)	368, 549
BlsI	GCNGC	2 cut(s)	369, 550
Bme1390I	CCNGG	3 cut(s)	105, 384, 465
Bme18I	GGWCC	2 cut(s)	450, 520
BmgT120I	GGNCC	4 cut(s)	428, 450, 520, 569
BmiI	GGNNCC	2 cut(s)	109, 481
BmrFI	CCNGG	3 cut(s)	105, 384, 465
BmsI	GCATC	2 cut(s)	272, 292
BpiI	GAAGAC	5 cut(s)	50, 164, 365, 461, 502
BplI	GAGNNNNNCTC	2 cut(s)	546, 578
BpuMI	CCSGG	3 cut(s)	105, 384, 465
BsaJI	CCNNGG	2 cut(s)	473, 549
BsaWI	WCCGGW	1 cut(s)	414
BsaXI	ACNNNNNCTCC	4 cut(s)	138, 168, 187, 217
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 104, 224, 459
Bse1I	ACTGG	1 cut(s)	305
BseAI	TCCGGA	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	473, 549
BseGI	GGATG	4 cut(s)	263, 271, 283, 301
BseLI	CCNNNNNNNGG	4 cut(s)	103, 104, 224, 459
BseNI	ACTGG	1 cut(s)	305
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	354
Bsh1236I	CGCG	1 cut(s)	551
BshFI	GGCC	4 cut(s)	255, 429, 463, 570
BshNI	GGYRCC	1 cut(s)	107
BsiSI	CCGG	4 cut(s)	104, 384, 415, 464
BslFI	GGGAC	1 cut(s)	598
BslI	CCNNNNNNNGG	4 cut(s)	103, 104, 224, 459
BsmAI	GTCTC	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	598
BsnI	GGCC	4 cut(s)	255, 429, 463, 570
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp13I	TCCGGA	1 cut(s)	414
Bsp143I	GATC	4 cut(s)	342, 437, 583, 591
BspACI	CCGC	5 cut(s)	353, 523, 533, 549, 551
BspANI	GGCC	4 cut(s)	255, 429, 463, 570
BspEI	TCCGGA	1 cut(s)	414
BspFNI	CGCG	1 cut(s)	551
BspLI	GGNNCC	2 cut(s)	109, 481
BspMAI	CTGCAG	1 cut(s)	372
BspPI	GGATC	2 cut(s)	445, 586
BspT107I	GGYRCC	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	473, 549
BssMI	GATC	4 cut(s)	342, 437, 583, 591
BssT1I	CCWWGG	1 cut(s)	473
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	549
BstF5I	GGATG	4 cut(s)	263, 271, 283, 301
BstFNI	CGCG	1 cut(s)	551
BstKTI	GATC	4 cut(s)	345, 440, 586, 594
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	4 cut(s)	342, 437, 583, 591
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	3 cut(s)	103, 382, 463
BstSFI	CTRYAG	1 cut(s)	368
BstSLI	GKGCMC	1 cut(s)	112
BstUI	CGCG	1 cut(s)	551
BstV1I	GCAGC	1 cut(s)	354
BstV2I	GAAGAC	5 cut(s)	50, 164, 365, 461, 502
BstX2I	RGATCY	2 cut(s)	437, 583
BstYI	RGATCY	2 cut(s)	437, 583
BsuRI	GGCC	4 cut(s)	255, 429, 463, 570
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	4 cut(s)	263, 271, 283, 301
BtsI	GCAGTG	1 cut(s)	532
BtsIMutI	CAGTG	1 cut(s)	532
Cfr13I	GGNCC	4 cut(s)	428, 450, 520, 569
Cfr42I	CCGCGG	1 cut(s)	552
CpoI	CGGWCCG	1 cut(s)	450
CseI	GACGC	1 cut(s)	321
Csp6I	GTAC	2 cut(s)	92, 101
CspI	CGGWCCG	1 cut(s)	450
CviAII	CATG	1 cut(s)	79
CviQI	GTAC	2 cut(s)	92, 101
DpnI	GATC	4 cut(s)	344, 439, 585, 593
DpnII	GATC	4 cut(s)	342, 437, 583, 591
DrdI	GACNNNNNNGTC	1 cut(s)	563
DseDI	GACNNNNNNGTC	1 cut(s)	563
EaeI	YGGCCR	1 cut(s)	461
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	473
Eco32I	GATATC	1 cut(s)	599
Eco47I	GGWCC	2 cut(s)	450, 520
EcoO109I	RGGNCCY	1 cut(s)	428
EcoRV	GATATC	1 cut(s)	599
EcoT14I	CCWWGG	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	1 cut(s)	82
FaiI	YATR	5 cut(s)	75, 80, 136, 143, 294
FaqI	GGGAC	1 cut(s)	598
FatI	CATG	1 cut(s)	78
FauI	CCCGC	1 cut(s)	544
Fnu4HI	GCNGC	2 cut(s)	368, 549
FokI	GGATG	4 cut(s)	250, 258, 270, 288
Fsp4HI	GCNGC	2 cut(s)	368, 549
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	2 cut(s)	368, 549
HaeIII	GGCC	4 cut(s)	255, 429, 463, 570
HapII	CCGG	4 cut(s)	104, 384, 415, 464
HgaI	GACGC	1 cut(s)	321
Hin1II	CATG	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	2 cut(s)	323, 575
HinfI	GANTC	2 cut(s)	389, 455
HpaI	GTTAAC	1 cut(s)	121
HpaII	CCGG	4 cut(s)	104, 384, 415, 464
HphI	GGTGA	3 cut(s)	305, 367, 412
Hpy166II	GTNNAC	2 cut(s)	31, 121
Hpy188I	TCNGA	3 cut(s)	437, 454, 596
Hpy188III	TCNNGA	5 cut(s)	43, 166, 235, 415, 581
Hpy8I	GTNNAC	2 cut(s)	31, 121
Hpy99I	CGWCG	3 cut(s)	382, 489, 569
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	1 cut(s)	370
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	1 cut(s)	82
Kpn2I	TCCGGA	1 cut(s)	414
KspAI	GTTAAC	1 cut(s)	121
KspI	CCGCGG	1 cut(s)	552
Kzo9I	GATC	4 cut(s)	342, 437, 583, 591
LpnPI	CCDG	8 cut(s)	20, 56, 111, 117, 318, 397, 428, 477
Lsp1109I	GCAGC	1 cut(s)	354
LweI	GCATC	2 cut(s)	272, 292
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	4 cut(s)	344, 439, 585, 593
MboI	GATC	4 cut(s)	342, 437, 583, 591
MflI	RGATCY	2 cut(s)	437, 583
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	2 cut(s)	24, 178
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	8 cut(s)	47, 122, 140, 411, 441, 505, 511, 532
MroI	TCCGGA	1 cut(s)	414
MroXI	GAANNNNTTC	2 cut(s)	161, 410
MseI	TTAA	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	551
MspI	CCGG	4 cut(s)	104, 384, 415, 464
MspR9I	CCNGG	3 cut(s)	105, 384, 465
MvnI	CGCG	1 cut(s)	551
NciI	CCSGG	3 cut(s)	105, 384, 465
NdeII	GATC	4 cut(s)	342, 437, 583, 591
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	2 cut(s)	109, 481
NmuCI	GTSAC	1 cut(s)	400
NspI	RCATGY	1 cut(s)	82
PciI	ACATGT	1 cut(s)	78
PdmI	GAANNNNTTC	2 cut(s)	161, 410
PfeI	GAWTC	1 cut(s)	455
PkrI	GCNGC	2 cut(s)	369, 550
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PscI	ACATGT	1 cut(s)	78
PspN4I	GGNNCC	2 cut(s)	109, 481
PspPI	GGNCC	4 cut(s)	428, 450, 520, 569
PstI	CTGCAG	1 cut(s)	372
PsuI	RGATCY	2 cut(s)	437, 583
RsaI	GTAC	2 cut(s)	93, 102
RsaNI	GTAC	2 cut(s)	92, 101
Rsr2I	CGGWCCG	1 cut(s)	450
RsrII	CGGWCCG	1 cut(s)	450
SacII	CCGCGG	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	2 cut(s)	368, 549
Sau3AI	GATC	4 cut(s)	342, 437, 583, 591
Sau96I	GGNCC	4 cut(s)	428, 450, 520, 569
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	3 cut(s)	105, 384, 465
SduI	GDGCHC	1 cut(s)	112
SfaNI	GCATC	2 cut(s)	272, 292
SfcI	CTRYAG	1 cut(s)	368
Sfr303I	CCGCGG	1 cut(s)	552
SgrBI	CCGCGG	1 cut(s)	552
SinI	GGWCC	2 cut(s)	450, 520
Sse9I	AATT	2 cut(s)	24, 178
SsiI	CCGC	5 cut(s)	353, 523, 533, 549, 551
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	3 cut(s)	103, 382, 463
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	3 cut(s)	345, 392, 601
TaqII	GACCGA	1 cut(s)	438
TasI	AATT	2 cut(s)	24, 178
TauI	GCSGC	1 cut(s)	551
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	532
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	1 cut(s)	367
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	1 cut(s)	260
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	532
VpaK11BI	GGWCC	2 cut(s)	450, 520
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	1 cut(s)	82
XmnI	GAANNNNTTC	2 cut(s)	161, 410
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.