Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000124.1

Orthogroup ID

OG0010612

Physical Location & Seq

Genomic Coordinates Forward (+)

90947 .. 97462

Gene Structure 6516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000124.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atgacggtgacgaaacctttccggcggattttgggacaactcagatctgtttctccatctgaatcttggccgggtcttccttgggtaacccgacggcgacgaagactcaaggtggttgaggttgaggtcggcggaggtgcggtggaggaagaagccgcaggagacgagctcgttggcccaaagcttgaagacctgcctgtccgatatcgagttcaagatttgccggtccgattcgtccccatcatcggtcgccggatttcggttaccggtttccggaatccggtcaccgttagccggagtccggtcaccggtcgccggattccggtcgccggagaccgcgccggccactggtcaccggagcacagcaaggtggaaggaaaaagtgaatccctccctctcttacctcgctctctctctcgacctccccagcaccgctgcgatgacgccgtacgacgtcccaccgccatcactgattaccacaagaggttacttcagcacaaggagctcaaatccagagtccgcggaagtcaaattcgcactccaaatcctccttattcatgttcgattctgcatctgcaaccggagagtgtctccctcaccatcggcaaactagctcacaagcaatgtggtagtcgagagtatgctggtggggacatgcttgagccaagggaagctgatatacctgccttgttcttggttttcattgtgcttcctttgcttgcttatgttttaattggaaaatggagtgaggcatctaagaagagtgagagggtaagtctattgattcctggtatggttttggttgatgcttttgcttttggtcagatacttggattctacaaccttctgagaggaaaagtagttgctagaaatgatggtatgcgaccaagtctttatcaggaagctgctactggtttaattgctggagcagctggagtgtatctcagctttccatttgttgtagcttgtcaacataagcaggttgaatccatgggaccaattgcagagcgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04964 map04964

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

337

Amino Acids

37.34

Weight (kDa)

10.04

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010612)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0359781 RchiOBHm_Chr2g0138061 RchiOBHm_Chr2g0148721 RchiOBHm_Chr7g0216041
rosa_laevigata	RLG00000028710
rosa_multiflora	Rmu_sc0000124.1_g000025 Rmu_sc0007828.1_g000006
rosa_roxburghii	Rroxscaffold_1G00070670 Rroxscaffold_3G00243710 Rroxscaffold_4G00286700 Rroxscaffold_4G00287320 Rroxscaffold_5G00348630 Rroxscaffold_5G00379830 Rroxscaffold_6G00391350
rosa_samantha	Rh2AG198900 Rh2CG110500 Rh2DG206500 Rh6BG130400 Rh6CG128600 Rh6DG115800 Rh7BG287800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	197
AatII	GACGTC	1 cut(s)	457
Acc36I	ACCTGC	3 cut(s)	201, 691, 970
AccII	CGCG	2 cut(s)	339, 522
AccIII	TCCGGA	1 cut(s)	273
AciI	CCGC	9 cut(s)	25, 132, 140, 156, 337, 433, 462, 520, 522
AcoI	YGGCCR	2 cut(s)	68, 343
AcsI	RAATTY	1 cut(s)	531
AcuI	CTGAAG	1 cut(s)	476
AcyI	GRCGYC	2 cut(s)	444, 454
AfaI	GTAC	1 cut(s)	450
AgeI	ACCGGT	2 cut(s)	266, 308
AgsI	TTSAA	3 cut(s)	188, 215, 986
AjnI	CCWGG	1 cut(s)	787
AluBI	AGCT	9 cut(s)	169, 184, 505, 614, 674, 905, 932, 948, 965
AluI	AGCT	9 cut(s)	169, 184, 505, 614, 674, 905, 932, 948, 965
Alw21I	GWGCWC	3 cut(s)	171, 363, 507
Alw26I	GTCTC	3 cut(s)	156, 327, 595
Aor13HI	TCCGGA	1 cut(s)	273
AoxI	GGCC	3 cut(s)	68, 175, 343
ApeKI	GCWGC	3 cut(s)	435, 905, 929
ApoI	RAATTY	1 cut(s)	531
ArsI	GACNNNNNNTTYG	2 cut(s)	501, 533
AsiGI	ACCGGT	2 cut(s)	266, 308
Asp700I	GAANNNNTTC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	3 cut(s)	176, 226, 995
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	5 cut(s)	19, 277, 298, 345, 589
AvaII	GGWCC	2 cut(s)	226, 995
BanII	GRGCYC	2 cut(s)	171, 507
BarI	GAAGNNNNNNTAC	2 cut(s)	663, 695
BbsI	GAAGAC	3 cut(s)	68, 109, 195
Bbv12I	GWGCWC	3 cut(s)	171, 363, 507
BbvI	GCAGC	3 cut(s)	422, 892, 941
BccI	CCATC	5 cut(s)	64, 248, 473, 608, 869
BceAI	ACGGC	2 cut(s)	110, 431
BciT130I	CCWGG	1 cut(s)	789
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	3 cut(s)	156, 327, 595
BfaI	CTAG	2 cut(s)	611, 867
BfuAI	ACCTGC	3 cut(s)	201, 691, 970
BglII	AGATCT	1 cut(s)	44
BisI	GCNGC	4 cut(s)	156, 436, 906, 930
BlsI	GCNGC	4 cut(s)	157, 437, 907, 931
Bme1390I	CCNGG	2 cut(s)	72, 789
Bme18I	GGWCC	2 cut(s)	226, 995
BmgT120I	GGNCC	3 cut(s)	176, 226, 995
BmiI	GGNNCC	1 cut(s)	996
BmrFI	CCNGG	2 cut(s)	72, 789
BmsI	GCATC	3 cut(s)	580, 761, 796
BpiI	GAAGAC	3 cut(s)	68, 109, 195
BplI	GAGNNNNNCTC	6 cut(s)	153, 185, 575, 607, 927, 959
BpmI	CTGGAG	2 cut(s)	945, 954
BpuEI	CTTGAG	2 cut(s)	92, 680
BpuMI	CCSGG	1 cut(s)	72
BsaHI	GRCGYC	2 cut(s)	444, 454
BsaI	GGTCTC	1 cut(s)	327
BsaJI	CCNNGG	4 cut(s)	80, 520, 665, 990
BsaWI	WCCGGW	8 cut(s)	266, 273, 280, 301, 308, 322, 355, 580
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bse118I	RCCGGY	4 cut(s)	223, 266, 308, 341
Bse1I	ACTGG	2 cut(s)	353, 916
Bse3DI	GCAATG	1 cut(s)	629
BseAI	TCCGGA	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	789
BseDI	CCNNGG	4 cut(s)	80, 520, 665, 990
BseMI	GCAATG	1 cut(s)	629
BseMII	CTCAG	3 cut(s)	55, 839, 958
BseNI	ACTGG	2 cut(s)	353, 916
BseXI	GCAGC	3 cut(s)	422, 892, 941
BseYI	CCCAGC	1 cut(s)	426
Bsh1236I	CGCG	2 cut(s)	339, 522
Bsh1285I	CGRYCG	3 cut(s)	250, 313, 327
BshFI	GGCC	3 cut(s)	70, 177, 345
BshTI	ACCGGT	2 cut(s)	266, 308
BsiEI	CGRYCG	3 cut(s)	250, 313, 327
BsiHKAI	GWGCWC	3 cut(s)	171, 363, 507
BsiWI	CGTACG	1 cut(s)	448
BslFI	GGGAC	5 cut(s)	48, 221, 441, 665, 1008
BsmAI	GTCTC	3 cut(s)	156, 327, 595
BsmBI	CGTCTC	1 cut(s)	156
BsmFI	GGGAC	5 cut(s)	48, 221, 441, 665, 1008
BsnI	GGCC	3 cut(s)	70, 177, 345
Bso31I	GGTCTC	1 cut(s)	327
Bsp1286I	GDGCHC	3 cut(s)	171, 363, 507
Bsp13I	TCCGGA	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	44
Bsp19I	CCATGG	1 cut(s)	990
BspACI	CCGC	9 cut(s)	25, 132, 140, 156, 337, 433, 462, 520, 522
BspANI	GGCC	3 cut(s)	70, 177, 345
BspCNI	CTCAG	3 cut(s)	54, 840, 957
BspEI	TCCGGA	1 cut(s)	273
BspFNI	CGCG	2 cut(s)	339, 522
BspLI	GGNNCC	1 cut(s)	996
BspMI	ACCTGC	3 cut(s)	201, 691, 970
BspTNI	GGTCTC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	629
BsrFI	RCCGGY	4 cut(s)	223, 266, 308, 341
BsrI	ACTGG	2 cut(s)	353, 916
BssAI	RCCGGY	4 cut(s)	223, 266, 308, 341
BssECI	CCNNGG	4 cut(s)	80, 520, 665, 990
BssMI	GATC	1 cut(s)	44
BssNI	GRCGYC	2 cut(s)	444, 454
BssT1I	CCWWGG	3 cut(s)	80, 665, 990
Bst2UI	CCWGG	1 cut(s)	789
Bst4CI	ACNGT	2 cut(s)	7, 289
Bst6I	CTCTTC	1 cut(s)	755
BstACI	GRCGYC	2 cut(s)	444, 454
BstC8I	GCNNGC	2 cut(s)	343, 720
BstDEI	CTNAG	4 cut(s)	41, 756, 848, 944
BstDSI	CCRYGG	2 cut(s)	520, 990
BstEII	GGTNACC	5 cut(s)	85, 262, 283, 304, 351
BstFNI	CGCG	2 cut(s)	339, 522
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	1 cut(s)	47
BstMAI	GTCTC	3 cut(s)	156, 327, 595
BstMBI	GATC	1 cut(s)	44
BstMCI	CGRYCG	3 cut(s)	250, 313, 327
BstMWI	GCNNNNNNNGC	3 cut(s)	502, 715, 929
BstNI	CCWGG	1 cut(s)	789
BstNSI	RCATGY	1 cut(s)	658
BstPI	GGTNACC	5 cut(s)	85, 262, 283, 304, 351
BstSCI	CCNGG	2 cut(s)	70, 787
BstUI	CGCG	2 cut(s)	339, 522
BstV1I	GCAGC	3 cut(s)	422, 892, 941
BstV2I	GAAGAC	3 cut(s)	68, 109, 195
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	3 cut(s)	70, 177, 345
BtgI	CCRYGG	2 cut(s)	520, 990
BtgZI	GCGATG	1 cut(s)	453
BtsIMutI	CAGTG	2 cut(s)	346, 468
BveI	ACCTGC	3 cut(s)	201, 691, 970
Cac8I	GCNNGC	2 cut(s)	343, 720
CfoI	GCGC	1 cut(s)	341
Cfr10I	RCCGGY	4 cut(s)	223, 266, 308, 341
Cfr13I	GGNCC	3 cut(s)	176, 226, 995
Cfr42I	CCGCGG	1 cut(s)	523
CpoI	CGGWCCG	1 cut(s)	226
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	449
CspAI	ACCGGT	2 cut(s)	266, 308
CspCI	CAANNNNNGTGG	2 cut(s)	607, 642
CspI	CGGWCCG	1 cut(s)	226
CviAII	CATG	3 cut(s)	558, 655, 991
CviQI	GTAC	1 cut(s)	449
DdeI	CTNAG	4 cut(s)	41, 756, 848, 944
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
EaeI	YGGCCR	2 cut(s)	68, 343
Eam1104I	CTCTTC	1 cut(s)	755
EarI	CTCTTC	1 cut(s)	755
EciI	GGCGGA	2 cut(s)	40, 147
Ecl136II	GAGCTC	2 cut(s)	169, 505
Eco130I	CCWWGG	3 cut(s)	80, 665, 990
Eco24I	GRGCYC	2 cut(s)	171, 507
Eco31I	GGTCTC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	206
Eco47I	GGWCC	2 cut(s)	226, 995
Eco53kI	GAGCTC	2 cut(s)	169, 505
Eco57I	CTGAAG	1 cut(s)	476
Eco91I	GGTNACC	5 cut(s)	85, 262, 283, 304, 351
EcoICRI	GAGCTC	2 cut(s)	169, 505
EcoO65I	GGTNACC	5 cut(s)	85, 262, 283, 304, 351
EcoRII	CCWGG	1 cut(s)	787
EcoRV	GATATC	1 cut(s)	206
EcoT14I	CCWWGG	3 cut(s)	80, 665, 990
EcoT38I	GRGCYC	2 cut(s)	171, 507
ErhI	CCWWGG	3 cut(s)	80, 665, 990
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	3 cut(s)	561, 658, 994
FaiI	YATR	9 cut(s)	559, 642, 656, 680, 726, 794, 881, 975, 992
FaqI	GGGAC	5 cut(s)	48, 221, 441, 665, 1008
FatI	CATG	3 cut(s)	557, 654, 990
Fnu4HI	GCNGC	4 cut(s)	156, 436, 906, 930
FriOI	GRGCYC	2 cut(s)	171, 507
Fsp4HI	GCNGC	4 cut(s)	156, 436, 906, 930
FspBI	CTAG	2 cut(s)	611, 867
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	4 cut(s)	156, 436, 906, 930
GsaI	CCCAGC	1 cut(s)	430
GsuI	CTGGAG	2 cut(s)	945, 954
HaeIII	GGCC	3 cut(s)	70, 177, 345
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	1 cut(s)	341
Hin1I	GRCGYC	2 cut(s)	444, 454
Hin1II	CATG	3 cut(s)	561, 658, 994
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HincII	GTYRAC	1 cut(s)	971
HindII	GTYRAC	1 cut(s)	971
HindIII	AAGCTT	1 cut(s)	182
HphI	GGTGA	5 cut(s)	19, 277, 298, 345, 589
Hpy166II	GTNNAC	1 cut(s)	971
Hpy188I	TCNGA	6 cut(s)	44, 61, 203, 230, 825, 849
Hpy188III	TCNNGA	6 cut(s)	215, 274, 417, 513, 635, 899
Hpy8I	GTNNAC	1 cut(s)	971
Hpy99I	CGWCG	3 cut(s)	96, 102, 456
HpyAV	CCTTC	2 cut(s)	368, 854
HpyCH4III	ACNGT	2 cut(s)	7, 289
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	3 cut(s)	571, 577, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	502, 715, 929
HpyF3I	CTNAG	4 cut(s)	41, 756, 848, 944
HpySE526I	ACGT	1 cut(s)	454
Hsp92I	GRCGYC	2 cut(s)	444, 454
Hsp92II	CATG	3 cut(s)	561, 658, 994
HspAI	GCGC	1 cut(s)	339
Kpn2I	TCCGGA	1 cut(s)	273
KroI	GCCGGC	1 cut(s)	341
KroNI	GCCGGC	1 cut(s)	343
KspI	CCGCGG	1 cut(s)	523
Kzo9I	GATC	1 cut(s)	44
LmnI	GCTCC	3 cut(s)	358, 502, 926
Lsp1109I	GCAGC	3 cut(s)	422, 892, 941
LweI	GCATC	3 cut(s)	580, 761, 796
MaeI	CTAG	2 cut(s)	611, 867
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	7 cut(s)	7, 85, 262, 283, 304, 351, 486
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MboII	GAAGA	5 cut(s)	68, 114, 161, 200, 772
MfeI	CAATTG	1 cut(s)	999
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	3 cut(s)	171, 363, 507
MluCI	AATT	4 cut(s)	531, 732, 918, 999
MlyI	GAGTC	3 cut(s)	99, 307, 525
MroI	TCCGGA	1 cut(s)	273
MroNI	GCCGGC	1 cut(s)	341
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	2 cut(s)	731, 917
MspA1I	CMGCKG	3 cut(s)	435, 522, 932
MspR9I	CCNGG	2 cut(s)	72, 789
MunI	CAATTG	1 cut(s)	999
MvaI	CCWGG	1 cut(s)	789
MvnI	CGCG	2 cut(s)	339, 522
MwoI	GCNNNNNNNGC	3 cut(s)	502, 715, 929
NaeI	GCCGGC	1 cut(s)	343
NciI	CCSGG	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	990
NdeII	GATC	1 cut(s)	44
NgoMIV	GCCGGC	1 cut(s)	341
NlaIII	CATG	3 cut(s)	561, 658, 994
NlaIV	GGNNCC	1 cut(s)	996
NmuCI	GTSAC	4 cut(s)	7, 283, 304, 351
NspI	RCATGY	1 cut(s)	658
PdiI	GCCGGC	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	9 cut(s)	62, 231, 277, 319, 386, 565, 784, 834, 986
Pfl23II	CGTACG	1 cut(s)	448
PflFI	GACNNNGTC	1 cut(s)	888
PinAI	ACCGGT	2 cut(s)	266, 308
PkrI	GCNGC	4 cut(s)	157, 437, 907, 931
PleI	GAGTC	3 cut(s)	99, 306, 524
PpsI	GAGTC	3 cut(s)	99, 306, 524
Psp124BI	GAGCTC	2 cut(s)	171, 507
Psp6I	CCWGG	1 cut(s)	787
PspEI	GGTNACC	5 cut(s)	85, 262, 283, 304, 351
PspFI	CCCAGC	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	787
PspLI	CGTACG	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	996
PspPI	GGNCC	3 cut(s)	176, 226, 995
PsuI	RGATCY	1 cut(s)	44
PsyI	GACNNNGTC	1 cut(s)	888
PvuII	CAGCTG	1 cut(s)	932
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
Rsr2I	CGGWCCG	1 cut(s)	226
RsrII	CGGWCCG	1 cut(s)	226
SacI	GAGCTC	2 cut(s)	171, 507
SacII	CCGCGG	1 cut(s)	523
SaqAI	TTAA	2 cut(s)	731, 917
SatI	GCNGC	4 cut(s)	156, 436, 906, 930
Sau3AI	GATC	1 cut(s)	44
Sau96I	GGNCC	3 cut(s)	176, 226, 995
SchI	GAGTC	3 cut(s)	99, 307, 525
ScrFI	CCNGG	2 cut(s)	72, 789
SduI	GDGCHC	3 cut(s)	171, 363, 507
SfaNI	GCATC	3 cut(s)	580, 761, 796
Sfr303I	CCGCGG	1 cut(s)	523
SgrBI	CCGCGG	1 cut(s)	523
SinI	GGWCC	2 cut(s)	226, 995
SmlI	CTYRAG	2 cut(s)	107, 659
SmoI	CTYRAG	2 cut(s)	107, 659
Sse9I	AATT	4 cut(s)	531, 732, 918, 999
SsiI	CCGC	9 cut(s)	25, 132, 140, 156, 337, 433, 462, 520, 522
SspMI	CTAG	2 cut(s)	611, 867
SstI	GAGCTC	2 cut(s)	171, 507
StyD4I	CCNGG	2 cut(s)	70, 787
StyI	CCWWGG	3 cut(s)	80, 665, 990
TaaI	ACNGT	2 cut(s)	7, 289
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	4 cut(s)	208, 418, 563, 634
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	4 cut(s)	531, 732, 918, 999
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	9 cut(s)	62, 231, 277, 319, 386, 565, 784, 834, 986
Tru1I	TTAA	2 cut(s)	731, 917
Tru9I	TTAA	2 cut(s)	731, 917
TscAI	CASTG	2 cut(s)	353, 475
TseFI	GTSAC	4 cut(s)	7, 283, 304, 351
TseI	GCWGC	3 cut(s)	435, 905, 929
Tsp45I	GTSAC	4 cut(s)	7, 283, 304, 351
TspDTI	ATGAA	2 cut(s)	546, 691
TspRI	CASTG	2 cut(s)	353, 475
Tth111I	GACNNNGTC	1 cut(s)	888
VpaK11BI	GGWCC	2 cut(s)	226, 995
XapI	RAATTY	1 cut(s)	531
XceI	RCATGY	1 cut(s)	658
XcmI	CCANNNNNNNNNTGG	1 cut(s)	63
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	2 cut(s)	611, 867
ZraI	GACGTC	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.