RchiOBHm_Chr2g0138061

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010612
Physical Location & Seq
Reverse (-)
55868627 .. 55869236
610 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50877

Sequence Viewer

Length: 294 bp
ATGACGGTGACGAAACCTTTCCAGCGGATTTTGGGACAACTCAGATCTGTTTCTCGATCTGAATCTTGGCCGGGTCTTCCTTGGGTAACCCGACGGCGACGAAGACTCAAGGTGGTTGAGGTTGAGGTCGGCGGAGGTGCGGTGGAGGAAGAAGCCGCAGGAGACGAGCTCATTGGCCCAAAGCTTGAAGACCTGCCTGTCCGATATCGAGTTCAAGATTTGCCGGTCCGATTCGTCCCCAGTCATTCTGATCTGGTGCCCAGATCAATTTTTTTTTTTTTTTGTACATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.11

Weight (kDa)

9.61

Isoelectric Point (pI)

79.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
Acc36I ACCTGC 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 256
AciI CCGC 4 cut(s) 25, 132, 140, 156
AcoI YGGCCR 1 cut(s) 68
AfaI GTAC 1 cut(s) 286
AgsI TTSAA 2 cut(s) 188, 215
AluBI AGCT 2 cut(s) 169, 184
AluI AGCT 2 cut(s) 169, 184
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 156
AoxI GGCC 2 cut(s) 68, 175
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 176, 226
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 261
BanI GGYRCC 1 cut(s) 256
BanII GRGCYC 1 cut(s) 171
BbsI GAAGAC 3 cut(s) 68, 109, 195
Bbv12I GWGCWC 1 cut(s) 171
BceAI ACGGC 1 cut(s) 110
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 156
BfuAI ACCTGC 1 cut(s) 201
BglII AGATCT 1 cut(s) 44
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 176, 226
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 72
BmrI ACTGGG 1 cut(s) 234
BmuI ACTGGG 1 cut(s) 234
BpiI GAAGAC 3 cut(s) 68, 109, 195
BplI GAGNNNNNCTC 2 cut(s) 153, 185
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bse118I RCCGGY 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 240
Bse8I GATNNNNATC 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 80
BseJI GATNNNNATC 1 cut(s) 61
BseMII CTCAG 1 cut(s) 55
BseNI ACTGG 1 cut(s) 240
BseSI GKGCMC 1 cut(s) 261
BshFI GGCC 2 cut(s) 70, 177
BshNI GGYRCC 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 2 cut(s) 71, 224
BslFI GGGAC 2 cut(s) 48, 221
BsmAI GTCTC 1 cut(s) 156
BsmBI CGTCTC 1 cut(s) 156
BsmFI GGGAC 2 cut(s) 48, 221
BsnI GGCC 2 cut(s) 70, 177
Bsp1286I GDGCHC 2 cut(s) 171, 261
Bsp1407I TGTACA 1 cut(s) 284
Bsp143I GATC 4 cut(s) 44, 56, 250, 263
BspACI CCGC 4 cut(s) 25, 132, 140, 156
BspANI GGCC 2 cut(s) 70, 177
BspCNI CTCAG 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 258
BspMI ACCTGC 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 223
BsrGI TGTACA 1 cut(s) 284
BsrI ACTGG 1 cut(s) 240
BssAI RCCGGY 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 4 cut(s) 44, 56, 250, 263
BssT1I CCWWGG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 7
BstAUI TGTACA 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 41
BstEII GGTNACC 1 cut(s) 85
BstKTI GATC 4 cut(s) 47, 59, 253, 266
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 4 cut(s) 44, 56, 250, 263
BstPI GGTNACC 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 70
BstSLI GKGCMC 1 cut(s) 261
BstV2I GAAGAC 3 cut(s) 68, 109, 195
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BsuRI GGCC 2 cut(s) 70, 177
BveI ACCTGC 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 223
Cfr13I GGNCC 2 cut(s) 176, 226
CpoI CGGWCCG 1 cut(s) 226
Csp6I GTAC 1 cut(s) 285
CspI CGGWCCG 1 cut(s) 226
CviJI RGCY 5 cut(s) 70, 155, 169, 177, 184
CviKI_1 RGCY 5 cut(s) 70, 155, 169, 177, 184
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 1 cut(s) 41
DpnI GATC 4 cut(s) 46, 58, 252, 265
DpnII GATC 4 cut(s) 44, 56, 250, 263
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 68
EciI GGCGGA 1 cut(s) 147
Ecl136II GAGCTC 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 171
Eco32I GATATC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 169
Eco91I GGTNACC 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 169
EcoO65I GGTNACC 1 cut(s) 85
EcoRV GATATC 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 80
Esp3I CGTCTC 1 cut(s) 156
FaqI GGGAC 2 cut(s) 48, 221
Fnu4HI GCNGC 1 cut(s) 156
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 2 cut(s) 70, 177
HapII CCGG 2 cut(s) 71, 224
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 3 cut(s) 62, 105, 231
HpaII CCGG 2 cut(s) 71, 224
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 5 cut(s) 44, 61, 203, 230, 250
Hpy188III TCNNGA 2 cut(s) 54, 215
Hpy99I CGWCG 2 cut(s) 96, 102
HpyCH4III ACNGT 1 cut(s) 7
HpyF3I CTNAG 1 cut(s) 41
Kzo9I GATC 4 cut(s) 44, 56, 250, 263
LpnPI CCDG 9 cut(s) 35, 84, 144, 206, 210, 237, 239, 253, 274
MaeIII GTNAC 2 cut(s) 7, 85
MalI GATC 4 cut(s) 46, 58, 252, 265
MboI GATC 4 cut(s) 44, 56, 250, 263
MboII GAAGA 4 cut(s) 68, 114, 161, 200
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 2 cut(s) 171, 261
MluCI AATT 1 cut(s) 267
MlyI GAGTC 1 cut(s) 99
MnlI CCTC 4 cut(s) 112, 118, 128, 139
MroXI GAANNNNTTC 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 2 cut(s) 71, 224
MspR9I CCNGG 1 cut(s) 72
NciI CCSGG 1 cut(s) 72
NdeII GATC 4 cut(s) 44, 56, 250, 263
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 62, 231
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
Psp124BI GAGCTC 1 cut(s) 171
PspEI GGTNACC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 2 cut(s) 176, 226
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
Rsr2I CGGWCCG 1 cut(s) 226
RsrII CGGWCCG 1 cut(s) 226
SacI GAGCTC 1 cut(s) 171
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 4 cut(s) 44, 56, 250, 263
Sau96I GGNCC 2 cut(s) 176, 226
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 2 cut(s) 171, 261
SetI ASST 8 cut(s) 19, 114, 123, 129, 139, 171, 186, 195
SinI GGWCC 1 cut(s) 226
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 1 cut(s) 267
SsiI CCGC 4 cut(s) 25, 132, 140, 156
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 70
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 1 cut(s) 7
TaqI TCGA 2 cut(s) 55, 208
TasI AATT 1 cut(s) 267
TatI WGTACW 1 cut(s) 284
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 2 cut(s) 62, 231
TseFI GTSAC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 226
XmnI GAANNNNTTC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.