Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010612

Physical Location & Seq

Genomic Coordinates Reverse (-)

26835088 .. 26840019

Gene Structure 4932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028710

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGACAGTGACGAAACCTTTTCGGCAGATTTTGGGACAACTCGGATCTATTTCTCGATCCGAATCTTGGCCGGGTCTTCCTTGGGGAACCCGACGGCGACGAAGACTTAAGGTGGTTGAGGTTGAGGTCGGCGGTGGTGCGGTGGAGGAAGAAGCCGCGGGAGACGAGCTCGTCGGCCCAAAGCTTCAAGATCTGCCGGTCCGATATCGAGTTCAAGATCTGCAGCCTCAGCCTCAGCCTCACTCAGATCTAAAGCCTCAGCCTCACTCAGATCTAAATCTATCACTTTCCGGTCTCAGCCTCAGCCTCAGCCTCAGCCTCCTCTCGTCTCAGCCTCAGCCTCAGCCTCCTCTCGTCTCAGCCTCACTCTCTCGACGACTCTGTTCCTTCATAGCTCCTCAGCCTCCTCTCGTCTCTCGACGACTCTGTTCCTCCATAGCTCCTCAGCCTCCTCTAGTCTCTCGACGACTCTGTTCCTCCATAGCTCCTCAGCCTCCTCTCGTCTCTCGACGACTCTGTTCCTCCATAGCTCCTCAGCCTCCTCTGATCCATCGACTCACTTTCTCAGCCACGACTCAGGACAGTGAACGGGATCTGATCCGGCGAGTTGGACATGGCGGCTTCACGGCAAGTTGGATCTACTGTAGCAAACCCGGTCACGACGAGCTACTCTCTTCCTCTTCCTCATCTCACGGGCTGCAGGAGGGGATAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

25.93

Weight (kDa)

9.77

Isoelectric Point (pI)

82.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010612)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0359781 RchiOBHm_Chr2g0138061 RchiOBHm_Chr2g0148721 RchiOBHm_Chr7g0216041
rosa_laevigata	RLG00000028710
rosa_multiflora	Rmu_sc0000124.1_g000025 Rmu_sc0007828.1_g000006
rosa_roxburghii	Rroxscaffold_1G00070670 Rroxscaffold_3G00243710 Rroxscaffold_4G00286700 Rroxscaffold_4G00287320 Rroxscaffold_5G00348630 Rroxscaffold_5G00379830 Rroxscaffold_6G00391350
rosa_samantha	Rh2AG198900 Rh2CG110500 Rh2DG206500 Rh6BG130400 Rh6CG128600 Rh6DG115800 Rh7BG287800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AccII	CGCG	1 cut(s)	158
AciI	CCGC	5 cut(s)	132, 140, 156, 158, 618
AclWI	GGATC	6 cut(s)	51, 52, 541, 592, 600, 644
AcoI	YGGCCR	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	66
AflII	CTTAAG	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	188, 215
AluBI	AGCT	7 cut(s)	169, 184, 395, 440, 485, 530, 667
AluI	AGCT	7 cut(s)	169, 184, 395, 440, 485, 530, 667
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	7 cut(s)	156, 299, 333, 361, 418, 463, 508
AlwI	GGATC	6 cut(s)	51, 52, 541, 592, 600, 644
AoxI	GGCC	2 cut(s)	68, 175
ApeKI	GCWGC	2 cut(s)	223, 697
AspS9I	GGNCC	2 cut(s)	176, 199
AsuC2I	CCSGG	2 cut(s)	72, 654
AvaII	GGWCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	171
BbsI	GAAGAC	2 cut(s)	68, 109
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	235, 684
BccI	CCATC	1 cut(s)	558
BceAI	ACGGC	2 cut(s)	110, 642
BcnI	CCSGG	2 cut(s)	72, 654
BcoDI	GTCTC	7 cut(s)	156, 299, 333, 361, 418, 463, 508
BfaI	CTAG	1 cut(s)	455
BfmI	CTRYAG	3 cut(s)	221, 643, 698
BfrI	CTTAAG	1 cut(s)	107
BglII	AGATCT	4 cut(s)	190, 217, 247, 271
BisI	GCNGC	4 cut(s)	156, 224, 619, 698
BlsI	GCNGC	4 cut(s)	157, 225, 620, 699
Bme1390I	CCNGG	2 cut(s)	72, 654
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	2 cut(s)	176, 199
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	72, 654
BpiI	GAAGAC	2 cut(s)	68, 109
BplI	GAGNNNNNCTC	4 cut(s)	153, 185, 656, 688
BpuMI	CCSGG	2 cut(s)	72, 654
BsaBI	GATNNNNATC	2 cut(s)	61, 276
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	80, 156
BsaWI	WCCGGW	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	196
Bse8I	GATNNNNATC	2 cut(s)	61, 276
BseDI	CCNNGG	2 cut(s)	80, 156
BseJI	GATNNNNATC	2 cut(s)	61, 276
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	235, 684
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	2 cut(s)	70, 177
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	5 cut(s)	71, 197, 291, 601, 654
BslFI	GGGAC	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	7 cut(s)	156, 299, 333, 361, 418, 463, 508
BsmBI	CGTCTC	5 cut(s)	156, 333, 361, 418, 508
BsmFI	GGGAC	1 cut(s)	48
BsnI	GGCC	2 cut(s)	70, 177
Bso31I	GGTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	171
BspACI	CCGC	5 cut(s)	132, 140, 156, 158, 618
BspANI	GGCC	2 cut(s)	70, 177
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	1 cut(s)	88
BspMAI	CTGCAG	2 cut(s)	225, 702
BspPI	GGATC	6 cut(s)	51, 52, 541, 592, 600, 644
BspTI	CTTAAG	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	80, 156
BssT1I	CCWWGG	1 cut(s)	80
Bst4CI	ACNGT	3 cut(s)	7, 584, 644
Bst6I	CTCTTC	2 cut(s)	679, 685
BstAFI	CTTAAG	1 cut(s)	107
BstDSI	CCRYGG	1 cut(s)	156
BstFNI	CGCG	1 cut(s)	158
BstMAI	GTCTC	7 cut(s)	156, 299, 333, 361, 418, 463, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	70, 652
BstSFI	CTRYAG	3 cut(s)	221, 643, 698
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	235, 684
BstV2I	GAAGAC	2 cut(s)	68, 109
BstX2I	RGATCY	7 cut(s)	44, 190, 217, 247, 271, 592, 636
BstYI	RGATCY	7 cut(s)	44, 190, 217, 247, 271, 592, 636
BsuRI	GGCC	2 cut(s)	70, 177
BtgI	CCRYGG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	12, 589
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	176, 199
Cfr42I	CCGCGG	1 cut(s)	159
CpoI	CGGWCCG	1 cut(s)	199
CspI	CGGWCCG	1 cut(s)	199
CviAII	CATG	1 cut(s)	614
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	68
Eam1104I	CTCTTC	2 cut(s)	679, 685
EarI	CTCTTC	2 cut(s)	679, 685
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	299
Eco32I	GATATC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoRV	GATATC	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	80
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	80
Esp3I	CGTCTC	5 cut(s)	156, 333, 361, 418, 508
FaeI	CATG	1 cut(s)	617
FaiI	YATR	5 cut(s)	392, 437, 482, 527, 615
FaqI	GGGAC	1 cut(s)	48
FatI	CATG	1 cut(s)	613
FauI	CCCGC	1 cut(s)	151
Fnu4HI	GCNGC	4 cut(s)	156, 224, 619, 698
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	4 cut(s)	156, 224, 619, 698
FspBI	CTAG	1 cut(s)	455
GluI	GCNGC	4 cut(s)	156, 224, 619, 698
HaeIII	GGCC	2 cut(s)	70, 177
HapII	CCGG	5 cut(s)	71, 197, 291, 601, 654
Hin1II	CATG	1 cut(s)	617
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	7 cut(s)	62, 378, 423, 468, 513, 555, 574
HpaII	CCGG	5 cut(s)	71, 197, 291, 601, 654
Hpy166II	GTNNAC	1 cut(s)	587
Hpy188I	TCNGA	8 cut(s)	44, 61, 203, 247, 271, 546, 597, 716
Hpy188III	TCNNGA	9 cut(s)	54, 188, 215, 372, 417, 462, 507, 578, 659
Hpy8I	GTNNAC	1 cut(s)	587
Hpy99I	CGWCG	8 cut(s)	96, 102, 176, 378, 423, 468, 513, 665
HpyAV	CCTTC	1 cut(s)	397
HpyCH4III	ACNGT	3 cut(s)	7, 584, 644
HpyCH4V	TGCA	2 cut(s)	223, 700
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
Hsp92II	CATG	1 cut(s)	617
KspI	CCGCGG	1 cut(s)	159
LmnI	GCTCC	4 cut(s)	400, 445, 490, 535
LpnPI	CCDG	7 cut(s)	84, 210, 304, 563, 614, 667, 686
Lsp1109I	GCAGC	2 cut(s)	235, 684
MaeI	CTAG	1 cut(s)	455
MaeIII	GTNAC	2 cut(s)	7, 656
MboII	GAAGA	5 cut(s)	68, 114, 161, 666, 672
MflI	RGATCY	7 cut(s)	44, 190, 217, 247, 271, 592, 636
MhlI	GDGCHC	1 cut(s)	171
MlyI	GAGTC	6 cut(s)	372, 417, 462, 507, 549, 568
MmeI	TCCRAC	2 cut(s)	589, 614
MseI	TTAA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	158
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	5 cut(s)	71, 197, 291, 601, 654
MspR9I	CCNGG	2 cut(s)	72, 654
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	229
NciI	CCSGG	2 cut(s)	72, 654
NlaIII	CATG	1 cut(s)	617
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	2 cut(s)	7, 656
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	4 cut(s)	157, 225, 620, 699
PleI	GAGTC	6 cut(s)	372, 417, 462, 507, 549, 568
PpsI	GAGTC	6 cut(s)	372, 417, 462, 507, 549, 568
Psp124BI	GAGCTC	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	2 cut(s)	176, 199
PstI	CTGCAG	2 cut(s)	225, 702
PsuI	RGATCY	7 cut(s)	44, 190, 217, 247, 271, 592, 636
Rsr2I	CGGWCCG	1 cut(s)	199
RsrII	CGGWCCG	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	171
SacII	CCGCGG	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	4 cut(s)	156, 224, 619, 698
Sau96I	GGNCC	2 cut(s)	176, 199
SchI	GAGTC	6 cut(s)	372, 417, 462, 507, 549, 568
ScrFI	CCNGG	2 cut(s)	72, 654
SduI	GDGCHC	1 cut(s)	171
SfcI	CTRYAG	3 cut(s)	221, 643, 698
Sfr303I	CCGCGG	1 cut(s)	159
SgrBI	CCGCGG	1 cut(s)	159
SinI	GGWCC	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SsiI	CCGC	5 cut(s)	132, 140, 156, 158, 618
SspMI	CTAG	1 cut(s)	455
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	70, 652
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	3 cut(s)	7, 584, 644
TaqI	TCGA	7 cut(s)	55, 208, 373, 418, 463, 508, 553
TauI	GCSGC	2 cut(s)	158, 621
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	2 cut(s)	12, 589
TseFI	GTSAC	2 cut(s)	7, 656
TseI	GCWGC	2 cut(s)	223, 697
Tsp45I	GTSAC	2 cut(s)	7, 656
TspDTI	ATGAA	1 cut(s)	379
TspRI	CASTG	2 cut(s)	12, 589
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	199
XspI	CTAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.