Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010612

Physical Location & Seq

Genomic Coordinates Forward (+)

36171302 .. 36172291

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00243710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTTGAATTCGACTATCATGCATATGGAAAATGTGATAAAGGATCTAAAGCAGAACGTTTCAAACGCTGAAAGTTGGGTTGACAGTGTAGAGGAAAAGTGTATAATAATATCAGAATCCAATGCAGCACTAAATGATAAAGTAAGCTTTCTGACGAGTAGATTGAAATGCATGGAGGCAGCTTTGTATCAAGCGGAGGAAGCAAAAATAGCTACTGCAATTGTTATTGAGTACATTGCAACTGAATCCGGTCACATATTTCAAGCAGTTTTCATTGGAGCTGCAATTTTCCTGATAGCACATGTATTGAGTTTGAAACAACATGTGAAACTTATGGAAGGCAAGCTGGATGAGACTAGGGCTACGCTTGAGGTGAGGGAGTCCAGAGTTGTTGAACTGGCGGATACTGGTAACATTAGAAAGTCTTTTAAAGAAGAATTAGGTAGTATGGTAGAGTTACACAACAATATAGAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.74

Weight (kDa)

5.14

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010612)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0359781 RchiOBHm_Chr2g0138061 RchiOBHm_Chr2g0148721 RchiOBHm_Chr7g0216041
rosa_laevigata	RLG00000028710
rosa_multiflora	Rmu_sc0000124.1_g000025 Rmu_sc0007828.1_g000006
rosa_roxburghii	Rroxscaffold_1G00070670 Rroxscaffold_3G00243710 Rroxscaffold_4G00286700 Rroxscaffold_4G00287320 Rroxscaffold_5G00348630 Rroxscaffold_5G00379830 Rroxscaffold_6G00391350
rosa_samantha	Rh2AG198900 Rh2CG110500 Rh2DG206500 Rh6BG130400 Rh6CG128600 Rh6DG115800 Rh7BG287800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	194, 401
AclI	AACGTT	1 cut(s)	57
AclWI	GGATC	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	7
AfaI	GTAC	1 cut(s)	233
AflIII	ACRYGT	2 cut(s)	301, 322
AgsI	TTSAA	6 cut(s)	7, 63, 166, 263, 316, 395
AluBI	AGCT	6 cut(s)	147, 182, 212, 281, 346, 477
AluI	AGCT	6 cut(s)	147, 182, 212, 281, 346, 477
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	51
ApeKI	GCWGC	3 cut(s)	125, 179, 281
ApoI	RAATTY	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	385
BbvI	GCAGC	3 cut(s)	137, 191, 268
BcgI	CGANNNNNNTGC	1 cut(s)	35
BciVI	GTATCC	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	2 cut(s)	357, 478
BfuI	GTATCC	1 cut(s)	397
BisI	GCNGC	3 cut(s)	126, 180, 282
BlsI	GCNGC	3 cut(s)	127, 181, 283
BpuEI	CTTGAG	1 cut(s)	389
BsaWI	WCCGGW	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	402, 412
Bse3DI	GCAATG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	355
BseMI	GCAATG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	402, 412
BseXI	GCAGC	3 cut(s)	137, 191, 268
BsiSI	CCGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	347
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	2 cut(s)	194, 401
BspPI	GGATC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	2 cut(s)	402, 412
BssMI	GATC	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	355
BstKTI	GATC	1 cut(s)	46
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 209
BstNSI	RCATGY	2 cut(s)	305, 326
BstV1I	GCAGC	3 cut(s)	137, 191, 268
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuI	GTATCC	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	355
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	4 cut(s)	19, 172, 302, 323
CviJI	RGCY	7 cut(s)	147, 182, 212, 281, 346, 362, 477
CviKI_1	RGCY	7 cut(s)	147, 182, 212, 281, 346, 362, 477
CviQI	GTAC	1 cut(s)	232
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
DraI	TTTAAA	1 cut(s)	430
EciI	GGCGGA	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	7
EcoT22I	ATGCAT	2 cut(s)	24, 173
FaeI	CATG	4 cut(s)	22, 175, 305, 326
FatI	CATG	4 cut(s)	18, 171, 301, 322
FauNDI	CATATG	1 cut(s)	24
Fnu4HI	GCNGC	3 cut(s)	126, 180, 282
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	3 cut(s)	126, 180, 282
FspBI	CTAG	2 cut(s)	357, 478
GluI	GCNGC	3 cut(s)	126, 180, 282
HapII	CCGG	1 cut(s)	249
Hin1II	CATG	4 cut(s)	22, 175, 305, 326
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	3 cut(s)	116, 245, 380
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	115, 153
Hpy188III	TCNNGA	2 cut(s)	292, 384
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	332
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	6 cut(s)	22, 125, 171, 218, 239, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 209
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	4 cut(s)	22, 175, 305, 326
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	278
LpnPI	CCDG	6 cut(s)	262, 305, 332, 383, 393, 397
Lsp1109I	GCAGC	3 cut(s)	137, 191, 268
MaeI	CTAG	2 cut(s)	357, 478
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	3 cut(s)	251, 410, 456
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	1 cut(s)	446
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	1 cut(s)	43
MluCI	AATT	4 cut(s)	7, 219, 285, 437
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	5 cut(s)	85, 169, 190, 364, 369
Mph1103I	ATGCAT	2 cut(s)	24, 173
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	23
MspI	CCGG	1 cut(s)	249
MunI	CAATTG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	200, 209
NdeI	CATATG	1 cut(s)	24
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	4 cut(s)	22, 175, 305, 326
NmuCI	GTSAC	1 cut(s)	251
NsiI	ATGCAT	2 cut(s)	24, 173
NspI	RCATGY	2 cut(s)	305, 326
PciI	ACATGT	2 cut(s)	301, 322
PfeI	GAWTC	2 cut(s)	116, 245
PkrI	GCNGC	3 cut(s)	127, 181, 283
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PscI	ACATGT	2 cut(s)	301, 322
Psp1406I	AACGTT	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	3 cut(s)	126, 180, 282
Sau3AI	GATC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	389
SetI	ASST	9 cut(s)	60, 149, 184, 214, 283, 348, 375, 445, 479
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	4 cut(s)	7, 219, 285, 437
SsiI	CCGC	2 cut(s)	194, 401
SspMI	CTAG	2 cut(s)	357, 478
TaaI	ACNGT	1 cut(s)	86
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	11
TasI	AATT	4 cut(s)	7, 219, 285, 437
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	116, 245
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	3 cut(s)	125, 179, 281
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	262
TspRI	CASTG	1 cut(s)	91
XapI	RAATTY	1 cut(s)	7
XceI	RCATGY	2 cut(s)	305, 326
XspI	CTAG	2 cut(s)	357, 478
Zsp2I	ATGCAT	2 cut(s)	24, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.