RchiOBHm_Chr1g0359781

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0010612
Physical Location & Seq
Reverse (-)
51631525 .. 51633663
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58481

Sequence Viewer

Length: 435 bp
ATGACGGTGACGAAGCCTTTCCTGCTGATTTTGGGACAACTTGGATCTGTTTCTCGATCCGAATCTTGGCCGGGTCTTCCTTGGGGAACCCGACGGCGACGAAGACTTAAGGTGGTTGAGGTTGAGGTCAGCGGTGGTGCGGTGGAGGAAGAAGCTGCGGGAGACGAGCTCGTCAGCCCAAAGCTTCAAGATCTGCCGGTCCGATATCGAGTTCTTCGTCCCCAATCAAAACCTTTGTTATCCATCTCCCATAAAGCAAGAACTCTGGTCTTTACTCATAAGAGGAGTGTAAGACCATATTCACAAGCTTTCTTTATGAATGTGGAGTATAATCATGTCGCATTTCAGTATGTGTTGAATACTAGACCCAAATCACAGAATCAAGTTGTCATACACCGTGGGTTTGCTTCGGTTGGGTACGCATATTTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.41

Weight (kDa)

10.49

Isoelectric Point (pI)

63.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AciI CCGC 3 cut(s) 132, 140, 158
AclWI GGATC 2 cut(s) 51, 52
AcoI YGGCCR 1 cut(s) 68
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 1 cut(s) 66
AflII CTTAAG 1 cut(s) 107
AgsI TTSAA 3 cut(s) 188, 358, 430
AluBI AGCT 4 cut(s) 155, 169, 184, 308
AluI AGCT 4 cut(s) 155, 169, 184, 308
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 2 cut(s) 51, 52
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 171
BbsI GAAGAC 2 cut(s) 68, 109
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 251
BceAI ACGGC 1 cut(s) 110
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 1 cut(s) 363
BfrI CTTAAG 1 cut(s) 107
BglII AGATCT 1 cut(s) 190
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 72
BpiI GAAGAC 2 cut(s) 68, 109
BplI GAGNNNNNCTC 2 cut(s) 153, 185
BpuMI CCSGG 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 61
BsaJI CCNNGG 2 cut(s) 80, 397
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse118I RCCGGY 1 cut(s) 196
Bse8I GATNNNNATC 1 cut(s) 61
BseDI CCNNGG 2 cut(s) 80, 397
BseJI GATNNNNATC 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 298
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 2 cut(s) 71, 197
BslFI GGGAC 2 cut(s) 48, 204
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 156
BsmBI CGTCTC 1 cut(s) 156
BsmFI GGGAC 2 cut(s) 48, 204
BsnI GGCC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 3 cut(s) 44, 56, 190
BspACI CCGC 3 cut(s) 132, 140, 158
BspANI GGCC 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 88
BspPI GGATC 2 cut(s) 51, 52
BspTI CTTAAG 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 80, 397
BssMI GATC 3 cut(s) 44, 56, 190
BssT1I CCWWGG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 7, 398
BstAFI CTTAAG 1 cut(s) 107
BstDSI CCRYGG 1 cut(s) 397
BstKTI GATC 3 cut(s) 47, 59, 193
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 3 cut(s) 44, 56, 190
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 2 cut(s) 68, 109
BstX2I RGATCY 2 cut(s) 44, 190
BstYI RGATCY 2 cut(s) 44, 190
BsuRI GGCC 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 397
Cfr10I RCCGGY 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 199
CpoI CGGWCCG 1 cut(s) 199
Csp6I GTAC 1 cut(s) 418
CspI CGGWCCG 1 cut(s) 199
CviAII CATG 1 cut(s) 335
CviJI RGCY 7 cut(s) 16, 70, 155, 169, 177, 184, 308
CviKI_1 RGCY 7 cut(s) 16, 70, 155, 169, 177, 184, 308
CviQI GTAC 1 cut(s) 418
DpnI GATC 3 cut(s) 46, 58, 192
DpnII GATC 3 cut(s) 44, 56, 190
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
EaeI YGGCCR 1 cut(s) 68
Ecl136II GAGCTC 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 171
Eco32I GATATC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 199
Eco53kI GAGCTC 1 cut(s) 169
EcoICRI GAGCTC 1 cut(s) 169
EcoRV GATATC 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 80
Esp3I CGTCTC 1 cut(s) 156
FaeI CATG 1 cut(s) 338
FaiI YATR 9 cut(s) 252, 279, 298, 317, 330, 336, 351, 392, 424
FaqI GGGAC 2 cut(s) 48, 204
FatI CATG 1 cut(s) 334
FauI CCCGC 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 156
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 363
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 70
HapII CCGG 2 cut(s) 71, 197
Hin1II CATG 1 cut(s) 338
HindIII AAGCTT 2 cut(s) 182, 306
HinfI GANTC 2 cut(s) 62, 379
HpaII CCGG 2 cut(s) 71, 197
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 2 cut(s) 61, 203
Hpy188III TCNNGA 2 cut(s) 54, 188
Hpy99I CGWCG 2 cut(s) 96, 102
HpyCH4III ACNGT 2 cut(s) 7, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
Hsp92II CATG 1 cut(s) 338
Kzo9I GATC 3 cut(s) 44, 56, 190
LpnPI CCDG 4 cut(s) 35, 84, 210, 251
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 7
MalI GATC 3 cut(s) 46, 58, 192
MboI GATC 3 cut(s) 44, 56, 190
MboII GAAGA 4 cut(s) 68, 114, 161, 206
MflI RGATCY 2 cut(s) 44, 190
MhlI GDGCHC 1 cut(s) 171
MnlI CCTC 4 cut(s) 112, 118, 139, 276
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 132
MspCI CTTAAG 1 cut(s) 107
MspI CCGG 2 cut(s) 71, 197
MspR9I CCNGG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 22
NciI CCSGG 1 cut(s) 72
NdeII GATC 3 cut(s) 44, 56, 190
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 7
PcsI WCGNNNNNNNCGW 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 62, 379
PkrI GCNGC 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 199
PsuI RGATCY 2 cut(s) 44, 190
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
Rsr2I CGGWCCG 1 cut(s) 199
RsrII CGGWCCG 1 cut(s) 199
SacI GAGCTC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 3 cut(s) 44, 56, 190
Sau96I GGNCC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 1 cut(s) 171
SetI ASST 8 cut(s) 114, 123, 129, 157, 171, 186, 235, 310
SinI GGWCC 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SsiI CCGC 3 cut(s) 132, 140, 158
SspMI CTAG 1 cut(s) 363
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 70
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 2 cut(s) 7, 398
TaqI TCGA 2 cut(s) 55, 208
TfiI GAWTC 2 cut(s) 62, 379
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 332
Vha464I CTTAAG 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 199
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.