Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010612

Physical Location & Seq

Genomic Coordinates Forward (+)

60055786 .. 60056031

Gene Structure 246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGACGGTGACGAAACCTTTCCGGCGGATTTTAGGCCCTCTCGGATCTGTTTCTCAATCCGAATCTTGGCCGCGTCTTCCTTGGGGAACCCGACGGCGACAAAGACGTAAGGTGGTTGAGGTTGAGGTCGGCGGTGGTGCGGTGGAGGAAGAAGCCACGGGAGACGAGCTCGTCGACCCAAAGCTTCAAGATCTGCCGGTCCGATATCAAGTTTCTTCGTCCCCGTCATTCGATGCGGGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

81

Amino Acids

8.95

Weight (kDa)

8.19

Isoelectric Point (pI)

80.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010612)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0359781 RchiOBHm_Chr2g0138061 RchiOBHm_Chr2g0148721 RchiOBHm_Chr7g0216041
rosa_laevigata	RLG00000028710
rosa_multiflora	Rmu_sc0000124.1_g000025 Rmu_sc0007828.1_g000006
rosa_roxburghii	Rroxscaffold_1G00070670 Rroxscaffold_3G00243710 Rroxscaffold_4G00286700 Rroxscaffold_4G00287320 Rroxscaffold_5G00348630 Rroxscaffold_5G00379830 Rroxscaffold_6G00391350
rosa_samantha	Rh2AG198900 Rh2CG110500 Rh2DG206500 Rh6BG130400 Rh6CG128600 Rh6DG115800 Rh7BG287800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	1 cut(s)	73
AciI	CCGC	5 cut(s)	25, 71, 132, 140, 236
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	1 cut(s)	188
AluBI	AGCT	2 cut(s)	169, 184
AluI	AGCT	2 cut(s)	169, 184
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	2 cut(s)	34, 68
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	2 cut(s)	35, 199
AsuHPI	GGTGA	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	171
BceAI	ACGGC	1 cut(s)	110
BcgI	CGANNNNNNTGC	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	244
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	2 cut(s)	35, 199
BmiI	GGNNCC	2 cut(s)	88, 241
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	68
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
BsaJI	CCNNGG	2 cut(s)	80, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	80, 156
BseLI	CCNNNNNNNGG	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	73
BshFI	GGCC	2 cut(s)	36, 70
BshNI	GGYRCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	22, 197
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	156
BsmBI	CGTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	36, 70
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	44, 190
BspACI	CCGC	5 cut(s)	25, 71, 132, 140, 236
BspANI	GGCC	2 cut(s)	36, 70
BspFNI	CGCG	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	88, 241
BspPI	GGATC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	80, 156
BssMI	GATC	2 cut(s)	44, 190
BssT1I	CCWWGG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	7
BstDSI	CCRYGG	1 cut(s)	156
BstFNI	CGCG	1 cut(s)	73
BstKTI	GATC	2 cut(s)	47, 193
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	2 cut(s)	44, 190
BstUI	CGCG	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	2 cut(s)	44, 190
BstYI	RGATCY	2 cut(s)	44, 190
BsuRI	GGCC	2 cut(s)	36, 70
BtgI	CCRYGG	1 cut(s)	156
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	35, 199
CpoI	CGGWCCG	1 cut(s)	199
CseI	GACGC	1 cut(s)	62
CspI	CGGWCCG	1 cut(s)	199
CviJI	RGCY	5 cut(s)	36, 70, 155, 169, 184
CviKI_1	RGCY	5 cut(s)	36, 70, 155, 169, 184
DpnI	GATC	2 cut(s)	46, 192
DpnII	GATC	2 cut(s)	44, 190
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	40
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	171
Eco32I	GATATC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	35
EcoRV	GATATC	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	80
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	80
Esp3I	CGTCTC	1 cut(s)	156
FaqI	GGGAC	1 cut(s)	205
FauI	CCCGC	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	71
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	71
FspBI	CTAG	1 cut(s)	244
GluI	GCNGC	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	36, 70
HapII	CCGG	2 cut(s)	22, 197
HgaI	GACGC	1 cut(s)	62
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	2 cut(s)	22, 197
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	3 cut(s)	44, 61, 203
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	2 cut(s)	96, 176
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	106
HpySE526I	ACGT	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	44, 190
LpnPI	CCDG	2 cut(s)	35, 210
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	244
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	2 cut(s)	46, 192
MboI	GATC	2 cut(s)	44, 190
MboII	GAAGA	3 cut(s)	68, 161, 207
MflI	RGATCY	2 cut(s)	44, 190
MhlI	GDGCHC	1 cut(s)	171
MnlI	CCTC	4 cut(s)	48, 112, 118, 139
MroXI	GAANNNNTTC	1 cut(s)	17
MspI	CCGG	2 cut(s)	22, 197
MvnI	CGCG	1 cut(s)	73
NdeII	GATC	2 cut(s)	44, 190
NlaIV	GGNNCC	2 cut(s)	88, 241
NmuCI	GTSAC	1 cut(s)	7
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	171
PspN4I	GGNNCC	2 cut(s)	88, 241
PspPI	GGNCC	2 cut(s)	35, 199
PsuI	RGATCY	2 cut(s)	44, 190
Rsr2I	CGGWCCG	1 cut(s)	199
RsrII	CGGWCCG	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	171
SalI	GTCGAC	1 cut(s)	173
SatI	GCNGC	1 cut(s)	71
Sau3AI	GATC	2 cut(s)	44, 190
Sau96I	GGNCC	2 cut(s)	35, 199
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	7 cut(s)	19, 109, 114, 123, 129, 171, 186
SfaNI	GCATC	1 cut(s)	223
SinI	GGWCC	1 cut(s)	199
SsiI	CCGC	5 cut(s)	25, 71, 132, 140, 236
SspMI	CTAG	1 cut(s)	244
SstI	GAGCTC	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	2 cut(s)	174, 231
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.