RchiOBHm_Chr7g0241031

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
67003552 .. 67003911
360 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGCTCCATTGGTGTAGGGTCGTGGTGAAGCCGGTGGTGGATGACACGGTTTTTGGGGGAACTAGGGAGGAGAGGTGGGTGGAGAGGGGGGTGATGGCGGTGAGCTTTGGTTGGTTGTGGTGGTGGAGGTTGAGGAATGAGATTGAGTCTTTGGTGGTTGTGACTGTGGCTAAGAAAGACTTGTCAATGAATATAGGGATGGCTGACTTTGTTGGTTGGTGGTTGTATTATGTCACTGTAACTATTGGAATGGTTAGAGTTGTGAAGGGTTTTATGTGGCTTGCTATGGTTTTCTTATGTAGAAGAAGAGGAGGAAACAATGTTACGAACATATATGGTGATCCTGAAGACAAAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.93

Weight (kDa)

9.1

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 98
AclWI GGATC 1 cut(s) 335
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
AlwI GGATC 1 cut(s) 335
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AsuHPI GGTGA 4 cut(s) 37, 103, 112, 350
BbsI GAAGAC 1 cut(s) 354
BccI CCATC 2 cut(s) 88, 193
BfaI CTAG 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 354
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bse118I RCCGGY 1 cut(s) 31
BseGI GGATG 2 cut(s) 46, 204
BseRI GAGGAG 2 cut(s) 83, 324
BsiSI CCGG 1 cut(s) 32
Bsp143I GATC 1 cut(s) 340
BspACI CCGC 1 cut(s) 98
BspPI GGATC 1 cut(s) 335
BsrFI RCCGGY 1 cut(s) 31
BssAI RCCGGY 1 cut(s) 31
BssMI GATC 1 cut(s) 340
Bst4CI ACNGT 3 cut(s) 49, 166, 238
Bst6I CTCTTC 1 cut(s) 301
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 171
BstF5I GGATG 2 cut(s) 46, 204
BstKTI GATC 1 cut(s) 343
BstMBI GATC 1 cut(s) 340
BstV2I GAAGAC 1 cut(s) 354
BtsCI GGATG 2 cut(s) 46, 204
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 282
Cfr10I RCCGGY 1 cut(s) 31
CviJI RGCY 5 cut(s) 31, 105, 170, 203, 280
CviKI_1 RGCY 5 cut(s) 31, 105, 170, 203, 280
DdeI CTNAG 1 cut(s) 171
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
FaiI YATR 8 cut(s) 194, 231, 275, 287, 298, 332, 334, 336
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FokI GGATG 2 cut(s) 53, 211
FspBI CTAG 1 cut(s) 63
HapII CCGG 1 cut(s) 32
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 32
HphI GGTGA 4 cut(s) 37, 103, 112, 350
Hpy188I TCNGA 1 cut(s) 359
Hpy188III TCNNGA 1 cut(s) 344
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 3 cut(s) 49, 166, 238
HpyF3I CTNAG 1 cut(s) 171
Kzo9I GATC 1 cut(s) 340
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 1 cut(s) 45
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 4 cut(s) 160, 232, 238, 322
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MboII GAAGA 3 cut(s) 315, 318, 359
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 7 cut(s) 61, 66, 78, 120, 126, 302, 305
MspI CCGG 1 cut(s) 32
NdeII GATC 1 cut(s) 340
NmuCI GTSAC 2 cut(s) 160, 232
PflFI GACNNNGTC 1 cut(s) 353
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PsyI GACNNNGTC 1 cut(s) 353
Sau3AI GATC 1 cut(s) 340
SchI GAGTC 1 cut(s) 155
SetI ASST 3 cut(s) 77, 107, 131
SgeI CNNG 7 cut(s) 34, 44, 58, 75, 193, 293, 356
SsiI CCGC 1 cut(s) 98
SspMI CTAG 1 cut(s) 63
TaaI ACNGT 3 cut(s) 49, 166, 238
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 2 cut(s) 160, 232
Tsp45I GTSAC 2 cut(s) 160, 232
TspDTI ATGAA 1 cut(s) 203
TspRI CASTG 1 cut(s) 241
Tth111I GACNNNGTC 1 cut(s) 353
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.