RchiOBHm_Chr6g0247941

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017235
Physical Location & Seq
Forward (+)
3933323 .. 3934879
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1065 bp
ATGAGTGCTTCGAAGGAGGGGGACCAGCCAGAGATTGGAGCAGCTGATGACATTGGAGAAATAGTGGTTGATCTCAAATATAAAGTTGATGAAGAGGCTGAAGCAAAAGTTGACAATGAGGCTTTGGAAGTTCAGGGTCTGCCAGAAACTGAATCCAAGGTTTCCATGGTGAATGTTGTAGTTCTGTCTATAATGATTTCAGCATTGATTTCTGTCTTAATCGGATCCACAGCCTTCAGTTATGTGAAGAAAGGAAGCTCAACCTTGAATCTTGCTATCTCTATGTGCCAACAATCACTGCCAAATAAGCAATTGAATGCAAGTCCTGATGTGGCATGTAACACTGCTCACATTTTCCAGCACATACCCTCTTCTTGGAACTGGATTAAAGCGCCATGGCATTCCAAGCTGAGCAGCTTCCAGAAGAGTTCATCATATTGCTTGATAGGACTGCAGGCATCAACTGAAGATGAAGTCCAGGAGAAGAGAGGAGCTACGGACTCTGTCTGTCAACAACCATTGCTGACTAAAAATTTGAGTGCAAGCTCTATGCCAGCTAGCACCACGCAGAATTTTCATTGTGAAATGAAGAGCTTACAGAACAGTTCATTTTACCAAACACAAGGACTGAATGAATCATATGAAGCTGAAAGGCAGGAGAAGGGTGGCTCAGAAAGAACTTTTGAAGAGAGTCCCTGGCTCCAATTGACTCCTCAATGGGATTATTCATATGGGAGTTTTACAACAACTGAGAAAAGCATAATCAAGAATGGACATGGAGATGCTGAAGAGCTTGCTACTCTTCAACCACACCATCTTTATGGGAATTTTACTGAAGATGAGAAAATTTCAATTAAGAATGGATCTGCAGATGATGAGTTAATTTCTCCTCAATGGGCTCGCCATCTTTATGGGAGTTTTACAACACAGGAGATGTACCCAATCAAGAATAGGCATAGAGATGATGAAGAGGCTGTTACTCCTCAACCTTACCATCTTTATGGGAATTTTACAACAGATGAAAAAACTTCAAATCAAGAATGTGCTGCAGTGAAATGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

354

Amino Acids

39.46

Weight (kDa)

4.89

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03071
rosa_chinensis RchiOBHm_Chr6g0247941
rosa_laevigata RLG00000015171
rosa_multiflora Rmu_sc0006106.1_g000013
rosa_roxburghii Rroxscaffold_180G00433170 Rroxscaffold_7G00213570
rosa_rugosa Rorug05G0529600
rosa_samantha Rh6AG044400 Rh6BG039200 Rh6BG039300 Rh6CG038000 Rh6DG035000
rosa_wichuraiana Rw6G003860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 35
AclWI GGATC 3 cut(s) 219, 232, 871
AcsI RAATTY 5 cut(s) 532, 571, 826, 846, 1006
AcuI CTGAAG 5 cut(s) 120, 220, 486, 807, 855
AfaI GTAC 1 cut(s) 938
AfiI CCNNNNNNNGG 2 cut(s) 35, 375
AgsI TTSAA 6 cut(s) 268, 316, 686, 806, 852, 1032
AjnI CCWGG 2 cut(s) 477, 695
AlwI GGATC 3 cut(s) 219, 232, 871
AlwNI CAGNNNCTG 2 cut(s) 139, 149
ApeKI GCWGC 3 cut(s) 41, 414, 1046
ApoI RAATTY 5 cut(s) 532, 571, 826, 846, 1006
ArsI GACNNNNNNTTYG 2 cut(s) 517, 549
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 181
AsuII TTCGAA 1 cut(s) 11
AsuNHI GCTAGC 1 cut(s) 557
AvaII GGWCC 1 cut(s) 22
BamHI GGATCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 901
BbvI GCAGC 3 cut(s) 53, 426, 1033
BccI CCATC 3 cut(s) 822, 912, 1002
BciT130I CCWGG 2 cut(s) 479, 697
BfaI CTAG 1 cut(s) 558
BfmI CTRYAG 3 cut(s) 452, 867, 1047
BfoI RGCGCY 1 cut(s) 395
BisI GCNGC 3 cut(s) 42, 415, 1047
BlpI GCTNAGC 1 cut(s) 410
BlsI GCNGC 3 cut(s) 43, 416, 1048
Bme1390I CCNGG 2 cut(s) 479, 697
Bme18I GGWCC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 3 cut(s) 23, 226, 701
BmrFI CCNGG 2 cut(s) 479, 697
BmsI GCATC 2 cut(s) 467, 772
BmtI GCTAGC 1 cut(s) 561
Bpu1102I GCTNAGC 1 cut(s) 410
Bpu14I TTCGAA 1 cut(s) 11
BsaJI CCNNGG 4 cut(s) 156, 165, 395, 695
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 375
Bse1I ACTGG 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 518
BseBI CCWGG 2 cut(s) 479, 697
BseDI CCNNGG 4 cut(s) 156, 165, 395, 695
BseLI CCNNNNNNNGG 2 cut(s) 35, 375
BseMI GCAATG 1 cut(s) 518
BseMII CTCAG 3 cut(s) 401, 684, 741
BseNI ACTGG 1 cut(s) 386
BseRI GAGGAG 4 cut(s) 504, 702, 879, 972
BseXI GCAGC 3 cut(s) 53, 426, 1033
BslFI GGGAC 2 cut(s) 35, 678
BslI CCNNNNNNNGG 2 cut(s) 35, 375
BsmFI GGGAC 2 cut(s) 35, 678
BsmI GAATGC 2 cut(s) 322, 400
Bsp119I TTCGAA 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 901
Bsp143I GATC 3 cut(s) 70, 224, 863
Bsp1720I GCTNAGC 1 cut(s) 410
Bsp19I CCATGG 2 cut(s) 165, 395
BspCNI CTCAG 3 cut(s) 402, 683, 742
BspLI GGNNCC 3 cut(s) 23, 226, 701
BspMAI CTGCAG 3 cut(s) 456, 871, 1051
BspOI GCTAGC 1 cut(s) 561
BspPI GGATC 3 cut(s) 219, 232, 871
BspQI GCTCTTC 2 cut(s) 584, 783
BspT104I TTCGAA 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 518
BsrI ACTGG 1 cut(s) 386
BssECI CCNNGG 4 cut(s) 156, 165, 395, 695
BssMI GATC 3 cut(s) 70, 224, 863
BssT1I CCWWGG 3 cut(s) 156, 165, 395
Bst2UI CCWGG 2 cut(s) 479, 697
Bst4CI ACNGT 1 cut(s) 605
Bst6I CTCTTC 9 cut(s) 87, 376, 419, 479, 584, 681, 783, 807, 963
BstBI TTCGAA 1 cut(s) 11
BstC8I GCNNGC 6 cut(s) 456, 544, 555, 559, 795, 901
BstDEI CTNAG 3 cut(s) 410, 670, 750
BstDSI CCRYGG 2 cut(s) 165, 395
BstH2I RGCGCY 1 cut(s) 395
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 3 cut(s) 73, 227, 866
BstMBI GATC 3 cut(s) 70, 224, 863
BstMWI GCNNNNNNNGC 2 cut(s) 307, 406
BstNI CCWGG 2 cut(s) 479, 697
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 2 cut(s) 477, 695
BstSFI CTRYAG 3 cut(s) 452, 867, 1047
BstV1I GCAGC 3 cut(s) 53, 426, 1033
BstX2I RGATCY 2 cut(s) 224, 863
BstXI CCANNNNNNTGG 3 cut(s) 821, 911, 1001
BstYI RGATCY 2 cut(s) 224, 863
BtgI CCRYGG 2 cut(s) 165, 395
BtsI GCAGTG 3 cut(s) 296, 342, 1056
BtsIMutI CAGTG 3 cut(s) 296, 342, 1056
Cac8I GCNNGC 6 cut(s) 456, 544, 555, 559, 795, 901
CaiI CAGNNNCTG 2 cut(s) 139, 149
CfoI GCGC 1 cut(s) 394
Cfr13I GGNCC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 937
CviAII CATG 4 cut(s) 166, 336, 396, 776
CviQI GTAC 1 cut(s) 937
DdeI CTNAG 3 cut(s) 410, 670, 750
DpnI GATC 3 cut(s) 72, 226, 865
DpnII GATC 3 cut(s) 70, 224, 863
Eam1104I CTCTTC 9 cut(s) 87, 376, 419, 479, 584, 681, 783, 807, 963
EarI CTCTTC 9 cut(s) 87, 376, 419, 479, 584, 681, 783, 807, 963
Eco130I CCWWGG 3 cut(s) 156, 165, 395
Eco24I GRGCYC 1 cut(s) 901
Eco47I GGWCC 1 cut(s) 22
Eco57I CTGAAG 5 cut(s) 120, 220, 486, 807, 855
EcoRII CCWGG 2 cut(s) 477, 695
EcoT14I CCWWGG 3 cut(s) 156, 165, 395
EcoT38I GRGCYC 1 cut(s) 901
ErhI CCWWGG 3 cut(s) 156, 165, 395
FaeI CATG 4 cut(s) 169, 339, 399, 779
FaqI GGGAC 2 cut(s) 35, 678
FatI CATG 4 cut(s) 165, 335, 395, 775
FauNDI CATATG 2 cut(s) 640, 730
Fnu4HI GCNGC 3 cut(s) 42, 415, 1047
FriOI GRGCYC 1 cut(s) 901
Fsp4HI GCNGC 3 cut(s) 42, 415, 1047
FspBI CTAG 1 cut(s) 558
GlaI GCGC 1 cut(s) 393
GluI GCNGC 3 cut(s) 42, 415, 1047
HaeII RGCGCY 1 cut(s) 395
HhaI GCGC 1 cut(s) 394
Hin1II CATG 4 cut(s) 169, 339, 399, 779
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HincII GTYRAC 2 cut(s) 112, 512
HindII GTYRAC 2 cut(s) 112, 512
HinfI GANTC 6 cut(s) 152, 268, 500, 635, 691, 709
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 2 cut(s) 112, 512
Hpy188I TCNGA 2 cut(s) 224, 673
Hpy188III TCNNGA 5 cut(s) 326, 421, 766, 946, 1037
Hpy8I GTNNAC 2 cut(s) 112, 512
HpyAV CCTTC 3 cut(s) 7, 244, 655
HpyCH4III ACNGT 1 cut(s) 605
HpyCH4V TGCA 5 cut(s) 320, 454, 542, 869, 1049
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 406
HpyF3I CTNAG 3 cut(s) 410, 670, 750
Hsp92II CATG 4 cut(s) 169, 339, 399, 779
HspAI GCGC 1 cut(s) 392
Kzo9I GATC 3 cut(s) 70, 224, 863
LguI GCTCTTC 2 cut(s) 584, 783
LmnI GCTCC 3 cut(s) 38, 491, 705
Lsp1109I GCAGC 3 cut(s) 53, 426, 1033
LweI GCATC 2 cut(s) 467, 772
MaeI CTAG 1 cut(s) 558
MaeIII GTNAC 2 cut(s) 338, 976
MalI GATC 3 cut(s) 72, 226, 865
MboI GATC 3 cut(s) 70, 224, 863
MfeI CAATTG 2 cut(s) 311, 704
MflI RGATCY 2 cut(s) 224, 863
MhlI GDGCHC 1 cut(s) 901
MluCI AATT 9 cut(s) 311, 532, 571, 704, 826, 846, 852, 882, 1006
MlyI GAGTC 3 cut(s) 494, 700, 703
MseI TTAA 4 cut(s) 218, 387, 855, 881
MslI CAYNNNNRTG 5 cut(s) 780, 819, 909, 960, 999
MspA1I CMGCKG 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 479, 697
MunI CAATTG 2 cut(s) 311, 704
Mva1269I GAATGC 2 cut(s) 322, 400
MvaI CCWGG 2 cut(s) 479, 697
MwoI GCNNNNNNNGC 2 cut(s) 307, 406
NcoI CCATGG 2 cut(s) 165, 395
NdeI CATATG 2 cut(s) 640, 730
NdeII GATC 3 cut(s) 70, 224, 863
NheI GCTAGC 1 cut(s) 557
NlaIII CATG 4 cut(s) 169, 339, 399, 779
NlaIV GGNNCC 3 cut(s) 23, 226, 701
NspI RCATGY 1 cut(s) 339
NspV TTCGAA 1 cut(s) 11
PciSI GCTCTTC 2 cut(s) 584, 783
PctI GAATGC 2 cut(s) 322, 400
PfeI GAWTC 3 cut(s) 152, 268, 635
PflFI GACNNNGTC 1 cut(s) 503
PflMI CCANNNNNTGG 1 cut(s) 35
PfoI TCCNGGA 1 cut(s) 477
PkrI GCNGC 3 cut(s) 43, 416, 1048
PleI GAGTC 3 cut(s) 494, 699, 703
PpsI GAGTC 3 cut(s) 494, 699, 703
Psp6I CCWGG 2 cut(s) 477, 695
PspGI CCWGG 2 cut(s) 477, 695
PspN4I GGNNCC 3 cut(s) 23, 226, 701
PspPI GGNCC 1 cut(s) 22
PstI CTGCAG 3 cut(s) 456, 871, 1051
PstNI CAGNNNCTG 2 cut(s) 139, 149
PsuI RGATCY 2 cut(s) 224, 863
PsyI GACNNNGTC 1 cut(s) 503
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 938
RsaNI GTAC 1 cut(s) 937
RseI CAYNNNNRTG 5 cut(s) 780, 819, 909, 960, 999
SapI GCTCTTC 2 cut(s) 584, 783
SaqAI TTAA 4 cut(s) 218, 387, 855, 881
SatI GCNGC 3 cut(s) 42, 415, 1047
Sau3AI GATC 3 cut(s) 70, 224, 863
Sau96I GGNCC 1 cut(s) 22
SchI GAGTC 3 cut(s) 494, 700, 703
ScrFI CCNGG 2 cut(s) 479, 697
SduI GDGCHC 1 cut(s) 901
SfaNI GCATC 2 cut(s) 467, 772
SfcI CTRYAG 3 cut(s) 452, 867, 1047
SfuI TTCGAA 1 cut(s) 11
SinI GGWCC 1 cut(s) 22
SmiMI CAYNNNNRTG 5 cut(s) 780, 819, 909, 960, 999
Sse9I AATT 9 cut(s) 311, 532, 571, 704, 826, 846, 852, 882, 1006
SspMI CTAG 1 cut(s) 558
StyD4I CCNGG 2 cut(s) 477, 695
StyI CCWWGG 3 cut(s) 156, 165, 395
TaaI ACNGT 1 cut(s) 605
TaqI TCGA 1 cut(s) 11
TasI AATT 9 cut(s) 311, 532, 571, 704, 826, 846, 852, 882, 1006
TfiI GAWTC 3 cut(s) 152, 268, 635
Tru1I TTAA 4 cut(s) 218, 387, 855, 881
Tru9I TTAA 4 cut(s) 218, 387, 855, 881
TscAI CASTG 3 cut(s) 303, 349, 1056
TseI GCWGC 3 cut(s) 41, 414, 1046
TspGWI ACGGA 1 cut(s) 512
TspRI CASTG 3 cut(s) 303, 349, 1056
Tth111I GACNNNGTC 1 cut(s) 503
Van91I CCANNNNNTGG 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 22
XapI RAATTY 5 cut(s) 532, 571, 826, 846, 1006
XceI RCATGY 1 cut(s) 339
XcmI CCANNNNNNNNNTGG 2 cut(s) 32, 163
XspI CTAG 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.