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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g03071 |
| rosa_chinensis | RchiOBHm_Chr6g0247941 |
| rosa_laevigata | RLG00000015171 |
| rosa_multiflora | Rmu_sc0006106.1_g000013 |
| rosa_roxburghii | Rroxscaffold_180G00433170 Rroxscaffold_7G00213570 |
| rosa_rugosa | Rorug05G0529600 |
| rosa_samantha | Rh6AG044400 Rh6BG039200 Rh6BG039300 Rh6CG038000 Rh6DG035000 |
| rosa_wichuraiana | Rw6G003860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 3 cut(s) | 595, 931, 1270 |
| Acc36I | ACCTGC | 3 cut(s) | 595, 931, 1270 |
| AccB1I | GGYRCC | 2 cut(s) | 1655, 2490 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1826, 1940 |
| AciI | CCGC | 1 cut(s) | 946 |
| AclWI | GGATC | 8 cut(s) | 39, 404, 735, 1578, 1938, 1951, 2010, 2023 |
| AcsI | RAATTY | 5 cut(s) | 2323, 2362, 2617, 2637, 2797 |
| AcyI | GRCGYC | 1 cut(s) | 2491 |
| AfaI | GTAC | 7 cut(s) | 75, 475, 811, 1007, 1150, 1346, 2729 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1665, 1826, 1940, 2166 |
| AhlI | ACTAGT | 1 cut(s) | 533 |
| AjnI | CCWGG | 2 cut(s) | 2268, 2486 |
| Alw21I | GWGCWC | 1 cut(s) | 124 |
| Alw26I | GTCTC | 7 cut(s) | 73, 184, 703, 767, 1042, 1106, 1381 |
| AlwI | GGATC | 8 cut(s) | 39, 404, 735, 1578, 1938, 1951, 2010, 2023 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 149, 1930, 1940 |
| ApoI | RAATTY | 5 cut(s) | 2323, 2362, 2617, 2637, 2797 |
| ArsI | GACNNNNNNTTYG | 8 cut(s) | 577, 609, 913, 945, 1252, 1284, 2308, 2340 |
| AspLEI | GCGC | 2 cut(s) | 2185, 2493 |
| AspS9I | GGNCC | 3 cut(s) | 660, 999, 1813 |
| AsuHPI | GGTGA | 2 cut(s) | 1708, 1972 |
| AsuII | TTCGAA | 1 cut(s) | 1685 |
| AsuNHI | GCTAGC | 1 cut(s) | 2348 |
| AvaII | GGWCC | 3 cut(s) | 660, 999, 1813 |
| BamHI | GGATCC | 2 cut(s) | 1943, 2015 |
| BanI | GGYRCC | 2 cut(s) | 1655, 2490 |
| BanII | GRGCYC | 4 cut(s) | 567, 903, 1242, 2692 |
| BbsI | GAAGAC | 3 cut(s) | 186, 378, 2387 |
| Bbv12I | GWGCWC | 1 cut(s) | 124 |
| BccI | CCATC | 5 cut(s) | 2613, 2660, 2703, 2750, 2793 |
| BceAI | ACGGC | 1 cut(s) | 255 |
| BciT130I | CCWGG | 2 cut(s) | 2270, 2488 |
| BclI | TGATCA | 4 cut(s) | 640, 979, 1318, 1474 |
| BcoDI | GTCTC | 7 cut(s) | 73, 184, 703, 767, 1042, 1106, 1381 |
| BcuI | ACTAGT | 1 cut(s) | 533 |
| BfaI | CTAG | 5 cut(s) | 167, 534, 1529, 1623, 2349 |
| BfmI | CTRYAG | 4 cut(s) | 85, 141, 2243, 2838 |
| BfoI | RGCGCY | 2 cut(s) | 2186, 2494 |
| BfuAI | ACCTGC | 3 cut(s) | 595, 931, 1270 |
| BlpI | GCTNAGC | 1 cut(s) | 2201 |
| Bme1390I | CCNGG | 2 cut(s) | 2270, 2488 |
| Bme18I | GGWCC | 3 cut(s) | 660, 999, 1813 |
| BmgT120I | GGNCC | 3 cut(s) | 660, 999, 1813 |
| BmiI | GGNNCC | 6 cut(s) | 564, 1239, 1657, 1945, 2017, 2492 |
| BmrFI | CCNGG | 2 cut(s) | 2270, 2488 |
| BmsI | GCATC | 8 cut(s) | 241, 580, 916, 1255, 1606, 1805, 2258, 2563 |
| BmtI | GCTAGC | 1 cut(s) | 2352 |
| BpiI | GAAGAC | 3 cut(s) | 186, 378, 2387 |
| BpmI | CTGGAG | 6 cut(s) | 566, 755, 902, 1094, 1241, 1433 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2201 |
| Bpu14I | TTCGAA | 1 cut(s) | 1685 |
| BpuEI | CTTGAG | 1 cut(s) | 120 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1569 |
| BsaHI | GRCGYC | 1 cut(s) | 2491 |
| BsaJI | CCNNGG | 4 cut(s) | 1947, 1956, 2186, 2486 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1839, 1869, 2751, 2781 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1665, 1826, 1940, 2166 |
| Bse3DI | GCAATG | 4 cut(s) | 705, 1044, 1383, 2309 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1569 |
| BseBI | CCWGG | 2 cut(s) | 2270, 2488 |
| BseDI | CCNNGG | 4 cut(s) | 1947, 1956, 2186, 2486 |
| BseJI | GATNNNNATC | 1 cut(s) | 1569 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1665, 1826, 1940, 2166 |
| BseMI | GCAATG | 4 cut(s) | 705, 1044, 1383, 2309 |
| BseRI | GAGGAG | 7 cut(s) | 449, 785, 1124, 2295, 2493, 2670, 2763 |
| BshNI | GGYRCC | 2 cut(s) | 1655, 2490 |
| BsiHKAI | GWGCWC | 1 cut(s) | 124 |
| BslFI | GGGAC | 1 cut(s) | 2469 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1665, 1826, 1940, 2166 |
| BsmAI | GTCTC | 7 cut(s) | 73, 184, 703, 767, 1042, 1106, 1381 |
| BsmFI | GGGAC | 1 cut(s) | 2469 |
| BsmI | GAATGC | 1 cut(s) | 2191 |
| Bsp119I | TTCGAA | 1 cut(s) | 1685 |
| Bsp1286I | GDGCHC | 5 cut(s) | 124, 567, 903, 1242, 2692 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2201 |
| Bsp19I | CCATGG | 2 cut(s) | 1956, 2186 |
| BspACI | CCGC | 1 cut(s) | 946 |
| BspLI | GGNNCC | 6 cut(s) | 564, 1239, 1657, 1945, 2017, 2492 |
| BspMAI | CTGCAG | 3 cut(s) | 145, 2247, 2842 |
| BspMI | ACCTGC | 3 cut(s) | 595, 931, 1270 |
| BspOI | GCTAGC | 1 cut(s) | 2352 |
| BspPI | GGATC | 8 cut(s) | 39, 404, 735, 1578, 1938, 1951, 2010, 2023 |
| BspQI | GCTCTTC | 1 cut(s) | 2574 |
| BspT104I | TTCGAA | 1 cut(s) | 1685 |
| BspT107I | GGYRCC | 2 cut(s) | 1655, 2490 |
| BsrDI | GCAATG | 4 cut(s) | 705, 1044, 1383, 2309 |
| BssECI | CCNNGG | 4 cut(s) | 1947, 1956, 2186, 2486 |
| BssNI | GRCGYC | 1 cut(s) | 2491 |
| BssT1I | CCWWGG | 3 cut(s) | 1947, 1956, 2186 |
| Bst2UI | CCWGG | 2 cut(s) | 2270, 2488 |
| Bst4CI | ACNGT | 5 cut(s) | 456, 792, 1131, 1590, 2396 |
| Bst6I | CTCTTC | 7 cut(s) | 1878, 2167, 2210, 2270, 2472, 2574, 2598 |
| BstACI | GRCGYC | 1 cut(s) | 2491 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 149, 332, 964 |
| BstBI | TTCGAA | 1 cut(s) | 1685 |
| BstC8I | GCNNGC | 8 cut(s) | 573, 909, 1248, 2247, 2335, 2346, 2350, 2692 |
| BstDSI | CCRYGG | 2 cut(s) | 1956, 2186 |
| BstH2I | RGCGCY | 2 cut(s) | 2186, 2494 |
| BstHHI | GCGC | 2 cut(s) | 2185, 2493 |
| BstMAI | GTCTC | 7 cut(s) | 73, 184, 703, 767, 1042, 1106, 1381 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 140, 146, 149, 332, 964, 2098, 2197 |
| BstNI | CCWGG | 2 cut(s) | 2270, 2488 |
| BstNSI | RCATGY | 4 cut(s) | 575, 911, 2130, 2660 |
| BstSCI | CCNGG | 2 cut(s) | 2268, 2486 |
| BstSFI | CTRYAG | 4 cut(s) | 85, 141, 2243, 2838 |
| BstV2I | GAAGAC | 3 cut(s) | 186, 378, 2387 |
| BstX2I | RGATCY | 2 cut(s) | 1943, 2015 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2702, 2792 |
| BstYI | RGATCY | 2 cut(s) | 1943, 2015 |
| BtgI | CCRYGG | 2 cut(s) | 1956, 2186 |
| BtsI | GCAGTG | 7 cut(s) | 643, 982, 1321, 1548, 2087, 2133, 2847 |
| BtsIMutI | CAGTG | 9 cut(s) | 466, 643, 982, 1321, 1548, 1728, 2087, 2133, 2847 |
| BveI | ACCTGC | 3 cut(s) | 595, 931, 1270 |
| Cac8I | GCNNGC | 8 cut(s) | 573, 909, 1248, 2247, 2335, 2346, 2350, 2692 |
| CaiI | CAGNNNCTG | 3 cut(s) | 149, 1930, 1940 |
| CfoI | GCGC | 2 cut(s) | 2185, 2493 |
| Cfr13I | GGNCC | 3 cut(s) | 660, 999, 1813 |
| CseI | GACGC | 1 cut(s) | 300 |
| Csp6I | GTAC | 7 cut(s) | 74, 474, 810, 1006, 1149, 1345, 2728 |
| CviQI | GTAC | 7 cut(s) | 74, 474, 810, 1006, 1149, 1345, 2728 |
| DinI | GGCGCC | 1 cut(s) | 2492 |
| Eam1104I | CTCTTC | 7 cut(s) | 1878, 2167, 2210, 2270, 2472, 2574, 2598 |
| EarI | CTCTTC | 7 cut(s) | 1878, 2167, 2210, 2270, 2472, 2574, 2598 |
| Eco130I | CCWWGG | 3 cut(s) | 1947, 1956, 2186 |
| Eco24I | GRGCYC | 4 cut(s) | 567, 903, 1242, 2692 |
| Eco32I | GATATC | 1 cut(s) | 1620 |
| Eco47I | GGWCC | 3 cut(s) | 660, 999, 1813 |
| EcoRII | CCWGG | 2 cut(s) | 2268, 2486 |
| EcoRV | GATATC | 1 cut(s) | 1620 |
| EcoT14I | CCWWGG | 3 cut(s) | 1947, 1956, 2186 |
| EcoT38I | GRGCYC | 4 cut(s) | 567, 903, 1242, 2692 |
| EgeI | GGCGCC | 1 cut(s) | 2492 |
| EheI | GGCGCC | 1 cut(s) | 2492 |
| ErhI | CCWWGG | 3 cut(s) | 1947, 1956, 2186 |
| FaqI | GGGAC | 1 cut(s) | 2469 |
| FauI | CCCGC | 1 cut(s) | 939 |
| FauNDI | CATATG | 2 cut(s) | 2431, 2521 |
| FbaI | TGATCA | 4 cut(s) | 640, 979, 1318, 1474 |
| FriOI | GRGCYC | 4 cut(s) | 567, 903, 1242, 2692 |
| FspBI | CTAG | 5 cut(s) | 167, 534, 1529, 1623, 2349 |
| GlaI | GCGC | 2 cut(s) | 2184, 2492 |
| GsuI | CTGGAG | 6 cut(s) | 566, 755, 902, 1094, 1241, 1433 |
| HaeII | RGCGCY | 2 cut(s) | 2186, 2494 |
| HgaI | GACGC | 1 cut(s) | 300 |
| HhaI | GCGC | 2 cut(s) | 2185, 2493 |
| Hin1I | GRCGYC | 1 cut(s) | 2491 |
| Hin6I | GCGC | 2 cut(s) | 2183, 2491 |
| HinP1I | GCGC | 2 cut(s) | 2183, 2491 |
| HincII | GTYRAC | 3 cut(s) | 403, 1498, 1903 |
| HindII | GTYRAC | 3 cut(s) | 403, 1498, 1903 |
| HindIII | AAGCTT | 4 cut(s) | 9, 489, 825, 1164 |
| HphI | GGTGA | 2 cut(s) | 1708, 1972 |
| Hpy166II | GTNNAC | 6 cut(s) | 403, 680, 1019, 1358, 1498, 1903 |
| Hpy188III | TCNNGA | 8 cut(s) | 109, 1457, 1574, 2117, 2212, 2557, 2737, 2828 |
| Hpy8I | GTNNAC | 6 cut(s) | 403, 680, 1019, 1358, 1498, 1903 |
| HpyAV | CCTTC | 7 cut(s) | 651, 990, 1329, 1513, 1681, 2035, 2446 |
| HpyCH4III | ACNGT | 5 cut(s) | 456, 792, 1131, 1590, 2396 |
| HpyCH4IV | ACGT | 2 cut(s) | 1008, 1347 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 140, 146, 149, 332, 964, 2098, 2197 |
| HpySE526I | ACGT | 2 cut(s) | 1008, 1347 |
| Hsp92I | GRCGYC | 1 cut(s) | 2491 |
| HspAI | GCGC | 2 cut(s) | 2183, 2491 |
| KasI | GGCGCC | 1 cut(s) | 2490 |
| Ksp22I | TGATCA | 4 cut(s) | 640, 979, 1318, 1474 |
| LguI | GCTCTTC | 1 cut(s) | 2574 |
| LmnI | GCTCC | 9 cut(s) | 562, 743, 937, 1082, 1237, 1421, 1538, 1829, 2282 |
| LweI | GCATC | 8 cut(s) | 241, 580, 916, 1255, 1606, 1805, 2258, 2563 |
| MaeI | CTAG | 5 cut(s) | 167, 534, 1529, 1623, 2349 |
| MaeII | ACGT | 2 cut(s) | 1008, 1347 |
| MaeIII | GTNAC | 7 cut(s) | 553, 889, 1228, 1645, 2129, 2587, 2767 |
| MfeI | CAATTG | 5 cut(s) | 687, 1026, 1365, 2102, 2495 |
| MflI | RGATCY | 2 cut(s) | 1943, 2015 |
| MhlI | GDGCHC | 5 cut(s) | 124, 567, 903, 1242, 2692 |
| Mly113I | GGCGCC | 1 cut(s) | 2491 |
| MseI | TTAA | 6 cut(s) | 128, 1503, 2009, 2178, 2646, 2672 |
| MslI | CAYNNNNRTG | 7 cut(s) | 249, 2571, 2610, 2661, 2700, 2751, 2790 |
| MspA1I | CMGCKG | 1 cut(s) | 1835 |
| MspR9I | CCNGG | 2 cut(s) | 2270, 2488 |
| MunI | CAATTG | 5 cut(s) | 687, 1026, 1365, 2102, 2495 |
| Mva1269I | GAATGC | 1 cut(s) | 2191 |
| MvaI | CCWGG | 2 cut(s) | 2270, 2488 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 140, 146, 149, 332, 964, 2098, 2197 |
| NarI | GGCGCC | 1 cut(s) | 2491 |
| NcoI | CCATGG | 2 cut(s) | 1956, 2186 |
| NdeI | CATATG | 2 cut(s) | 2431, 2521 |
| NheI | GCTAGC | 1 cut(s) | 2348 |
| NlaIV | GGNNCC | 6 cut(s) | 564, 1239, 1657, 1945, 2017, 2492 |
| NmuCI | GTSAC | 4 cut(s) | 553, 889, 1228, 1645 |
| NspI | RCATGY | 4 cut(s) | 575, 911, 2130, 2660 |
| NspV | TTCGAA | 1 cut(s) | 1685 |
| PaeI | GCATGC | 2 cut(s) | 575, 911 |
| PaqCI | CACCTGC | 3 cut(s) | 595, 931, 1270 |
| PciSI | GCTCTTC | 1 cut(s) | 2574 |
| PctI | GAATGC | 1 cut(s) | 2191 |
| PfeI | GAWTC | 8 cut(s) | 448, 505, 784, 841, 1123, 1180, 2059, 2426 |
| PflFI | GACNNNGTC | 1 cut(s) | 2294 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1826, 1940 |
| PfoI | TCCNGGA | 1 cut(s) | 2268 |
| PluTI | GGCGCC | 1 cut(s) | 2494 |
| Psp6I | CCWGG | 2 cut(s) | 2268, 2486 |
| PspGI | CCWGG | 2 cut(s) | 2268, 2486 |
| PspN4I | GGNNCC | 6 cut(s) | 564, 1239, 1657, 1945, 2017, 2492 |
| PspPI | GGNCC | 3 cut(s) | 660, 999, 1813 |
| PstI | CTGCAG | 3 cut(s) | 145, 2247, 2842 |
| PstNI | CAGNNNCTG | 3 cut(s) | 149, 1930, 1940 |
| PsuI | RGATCY | 2 cut(s) | 1943, 2015 |
| PsyI | GACNNNGTC | 1 cut(s) | 2294 |
| PvuII | CAGCTG | 1 cut(s) | 1835 |
| RsaI | GTAC | 7 cut(s) | 75, 475, 811, 1007, 1150, 1346, 2729 |
| RsaNI | GTAC | 7 cut(s) | 74, 474, 810, 1006, 1149, 1345, 2728 |
| RseI | CAYNNNNRTG | 7 cut(s) | 249, 2571, 2610, 2661, 2700, 2751, 2790 |
| SapI | GCTCTTC | 1 cut(s) | 2574 |
| SaqAI | TTAA | 6 cut(s) | 128, 1503, 2009, 2178, 2646, 2672 |
| Sau96I | GGNCC | 3 cut(s) | 660, 999, 1813 |
| ScrFI | CCNGG | 2 cut(s) | 2270, 2488 |
| SduI | GDGCHC | 5 cut(s) | 124, 567, 903, 1242, 2692 |
| SfaNI | GCATC | 8 cut(s) | 241, 580, 916, 1255, 1606, 1805, 2258, 2563 |
| SfcI | CTRYAG | 4 cut(s) | 85, 141, 2243, 2838 |
| SfoI | GGCGCC | 1 cut(s) | 2492 |
| SfuI | TTCGAA | 1 cut(s) | 1685 |
| SinI | GGWCC | 3 cut(s) | 660, 999, 1813 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 249, 2571, 2610, 2661, 2700, 2751, 2790 |
| SmlI | CTYRAG | 1 cut(s) | 135 |
| SmoI | CTYRAG | 1 cut(s) | 135 |
| SpeI | ACTAGT | 1 cut(s) | 533 |
| SphI | GCATGC | 2 cut(s) | 575, 911 |
| SsiI | CCGC | 1 cut(s) | 946 |
| SspDI | GGCGCC | 1 cut(s) | 2490 |
| SspMI | CTAG | 5 cut(s) | 167, 534, 1529, 1623, 2349 |
| StyD4I | CCNGG | 2 cut(s) | 2268, 2486 |
| StyI | CCWWGG | 3 cut(s) | 1947, 1956, 2186 |
| TaaI | ACNGT | 5 cut(s) | 456, 792, 1131, 1590, 2396 |
| TaiI | ACGT | 2 cut(s) | 1011, 1350 |
| TaqI | TCGA | 3 cut(s) | 108, 1458, 1685 |
| TaqII | GACCGA | 2 cut(s) | 677, 1016 |
| TfiI | GAWTC | 8 cut(s) | 448, 505, 784, 841, 1123, 1180, 2059, 2426 |
| Tru1I | TTAA | 6 cut(s) | 128, 1503, 2009, 2178, 2646, 2672 |
| Tru9I | TTAA | 6 cut(s) | 128, 1503, 2009, 2178, 2646, 2672 |
| TscAI | CASTG | 9 cut(s) | 466, 643, 982, 1321, 1548, 1735, 2094, 2140, 2847 |
| TseFI | GTSAC | 4 cut(s) | 553, 889, 1228, 1645 |
| Tsp45I | GTSAC | 4 cut(s) | 553, 889, 1228, 1645 |
| TspGWI | ACGGA | 5 cut(s) | 541, 950, 1216, 1752, 2303 |
| TspRI | CASTG | 9 cut(s) | 466, 643, 982, 1321, 1548, 1735, 2094, 2140, 2847 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2294 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1826, 1940 |
| VpaK11BI | GGWCC | 3 cut(s) | 660, 999, 1813 |
| XapI | RAATTY | 5 cut(s) | 2323, 2362, 2617, 2637, 2797 |
| XceI | RCATGY | 4 cut(s) | 575, 911, 2130, 2660 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1823, 1954 |
| XspI | CTAG | 5 cut(s) | 167, 534, 1529, 1623, 2349 |