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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g03071 |
| rosa_chinensis | RchiOBHm_Chr6g0247941 |
| rosa_laevigata | RLG00000015171 |
| rosa_multiflora | Rmu_sc0006106.1_g000013 |
| rosa_roxburghii | Rroxscaffold_180G00433170 Rroxscaffold_7G00213570 |
| rosa_rugosa | Rorug05G0529600 |
| rosa_samantha | Rh6AG044400 Rh6BG039200 Rh6BG039300 Rh6CG038000 Rh6DG035000 |
| rosa_wichuraiana | Rw6G003860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 166, 502 |
| Acc36I | ACCTGC | 3 cut(s) | 166, 502, 1897 |
| AccB1I | GGYRCC | 1 cut(s) | 887 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1058 |
| AciI | CCGC | 1 cut(s) | 181 |
| AclWI | GGATC | 4 cut(s) | 306, 810, 1242, 1255 |
| AcsI | RAATTY | 5 cut(s) | 1555, 1594, 1849, 1869, 2029 |
| AcuI | CTGAAG | 9 cut(s) | 78, 414, 738, 885, 1143, 1243, 1509, 1830, 1878 |
| AfaI | GTAC | 5 cut(s) | 46, 242, 382, 578, 1961 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 897, 1058, 1398 |
| AhlI | ACTAGT | 1 cut(s) | 104 |
| AjnI | CCWGG | 2 cut(s) | 1500, 1718 |
| Alw26I | GTCTC | 4 cut(s) | 2, 274, 338, 613 |
| AlwI | GGATC | 4 cut(s) | 306, 810, 1242, 1255 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1172 |
| ApeKI | GCWGC | 7 cut(s) | 281, 317, 620, 656, 1064, 1437, 2069 |
| ApoI | RAATTY | 5 cut(s) | 1555, 1594, 1849, 1869, 2029 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 148, 180, 484, 516, 1540, 1572 |
| AspLEI | GCGC | 1 cut(s) | 1417 |
| AspS9I | GGNCC | 3 cut(s) | 770, 1045, 1886 |
| AsuHPI | GGTGA | 2 cut(s) | 940, 1204 |
| AsuII | TTCGAA | 1 cut(s) | 917 |
| AsuNHI | GCTAGC | 1 cut(s) | 1580 |
| AvaII | GGWCC | 3 cut(s) | 770, 1045, 1886 |
| BamHI | GGATCC | 1 cut(s) | 1247 |
| BanI | GGYRCC | 1 cut(s) | 887 |
| BanII | GRGCYC | 3 cut(s) | 138, 474, 1924 |
| BbvI | GCAGC | 7 cut(s) | 293, 304, 632, 643, 1076, 1449, 2056 |
| BccI | CCATC | 5 cut(s) | 91, 932, 1845, 1935, 2025 |
| BciT130I | CCWGG | 2 cut(s) | 1502, 1720 |
| BclI | TGATCA | 3 cut(s) | 214, 550, 706 |
| BcoDI | GTCTC | 4 cut(s) | 2, 274, 338, 613 |
| BcuI | ACTAGT | 1 cut(s) | 104 |
| BfaI | CTAG | 4 cut(s) | 105, 761, 855, 1581 |
| BfmI | CTRYAG | 3 cut(s) | 1475, 1890, 2070 |
| BfoI | RGCGCY | 1 cut(s) | 1418 |
| BfuAI | ACCTGC | 3 cut(s) | 166, 502, 1897 |
| BisI | GCNGC | 7 cut(s) | 282, 318, 621, 657, 1065, 1438, 2070 |
| BlpI | GCTNAGC | 1 cut(s) | 1433 |
| BlsI | GCNGC | 7 cut(s) | 283, 319, 622, 658, 1066, 1439, 2071 |
| Bme1390I | CCNGG | 2 cut(s) | 1502, 1720 |
| Bme18I | GGWCC | 3 cut(s) | 770, 1045, 1886 |
| BmgT120I | GGNCC | 3 cut(s) | 770, 1045, 1886 |
| BmiI | GGNNCC | 5 cut(s) | 135, 471, 889, 1249, 1724 |
| BmrFI | CCNGG | 2 cut(s) | 1502, 1720 |
| BmsI | GCATC | 6 cut(s) | 151, 487, 838, 1037, 1490, 1795 |
| BmtI | GCTAGC | 1 cut(s) | 1584 |
| BpmI | CTGGAG | 3 cut(s) | 137, 473, 665 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1433 |
| Bpu14I | TTCGAA | 1 cut(s) | 917 |
| BsaBI | GATNNNNATC | 2 cut(s) | 801, 942 |
| BsaJI | CCNNGG | 4 cut(s) | 1179, 1188, 1418, 1718 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1071, 1101 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 897, 1058, 1398 |
| Bse1I | ACTGG | 7 cut(s) | 30, 120, 309, 456, 648, 725, 1409 |
| Bse3DI | GCAATG | 2 cut(s) | 615, 1541 |
| Bse8I | GATNNNNATC | 2 cut(s) | 801, 942 |
| BseBI | CCWGG | 2 cut(s) | 1502, 1720 |
| BseDI | CCNNGG | 4 cut(s) | 1179, 1188, 1418, 1718 |
| BseGI | GGATG | 1 cut(s) | 943 |
| BseJI | GATNNNNATC | 2 cut(s) | 801, 942 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 897, 1058, 1398 |
| BseMI | GCAATG | 2 cut(s) | 615, 1541 |
| BseMII | CTCAG | 8 cut(s) | 228, 285, 564, 624, 1032, 1424, 1707, 1764 |
| BseNI | ACTGG | 7 cut(s) | 30, 120, 309, 456, 648, 725, 1409 |
| BseRI | GAGGAG | 6 cut(s) | 20, 356, 1527, 1725, 1902, 1995 |
| BseXI | GCAGC | 7 cut(s) | 293, 304, 632, 643, 1076, 1449, 2056 |
| BshNI | GGYRCC | 1 cut(s) | 887 |
| BslFI | GGGAC | 1 cut(s) | 1701 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 897, 1058, 1398 |
| BsmAI | GTCTC | 4 cut(s) | 2, 274, 338, 613 |
| BsmFI | GGGAC | 1 cut(s) | 1701 |
| BsmI | GAATGC | 2 cut(s) | 1345, 1423 |
| Bsp119I | TTCGAA | 1 cut(s) | 917 |
| Bsp1286I | GDGCHC | 3 cut(s) | 138, 474, 1924 |
| Bsp143I | GATC | 8 cut(s) | 214, 298, 550, 685, 706, 802, 1093, 1247 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1433 |
| Bsp19I | CCATGG | 2 cut(s) | 1188, 1418 |
| BspACI | CCGC | 1 cut(s) | 181 |
| BspCNI | CTCAG | 8 cut(s) | 229, 284, 565, 623, 1031, 1425, 1706, 1765 |
| BspLI | GGNNCC | 5 cut(s) | 135, 471, 889, 1249, 1724 |
| BspMAI | CTGCAG | 3 cut(s) | 1479, 1894, 2074 |
| BspMI | ACCTGC | 3 cut(s) | 166, 502, 1897 |
| BspOI | GCTAGC | 1 cut(s) | 1584 |
| BspPI | GGATC | 4 cut(s) | 306, 810, 1242, 1255 |
| BspQI | GCTCTTC | 2 cut(s) | 1607, 1806 |
| BspT104I | TTCGAA | 1 cut(s) | 917 |
| BspT107I | GGYRCC | 1 cut(s) | 887 |
| BsrDI | GCAATG | 2 cut(s) | 615, 1541 |
| BsrI | ACTGG | 7 cut(s) | 30, 120, 309, 456, 648, 725, 1409 |
| BssECI | CCNNGG | 4 cut(s) | 1179, 1188, 1418, 1718 |
| BssMI | GATC | 8 cut(s) | 214, 298, 550, 685, 706, 802, 1093, 1247 |
| BssT1I | CCWWGG | 3 cut(s) | 1179, 1188, 1418 |
| Bst2UI | CCWGG | 2 cut(s) | 1502, 1720 |
| Bst4CI | ACNGT | 4 cut(s) | 27, 363, 822, 1628 |
| BstBI | TTCGAA | 1 cut(s) | 917 |
| BstC8I | GCNNGC | 8 cut(s) | 144, 480, 1479, 1567, 1578, 1582, 1818, 1924 |
| BstDEI | CTNAG | 8 cut(s) | 237, 271, 573, 610, 1018, 1433, 1693, 1773 |
| BstDSI | CCRYGG | 2 cut(s) | 1188, 1418 |
| BstF5I | GGATG | 1 cut(s) | 943 |
| BstH2I | RGCGCY | 1 cut(s) | 1418 |
| BstHHI | GCGC | 1 cut(s) | 1417 |
| BstKTI | GATC | 8 cut(s) | 217, 301, 553, 688, 709, 805, 1096, 1250 |
| BstMAI | GTCTC | 4 cut(s) | 2, 274, 338, 613 |
| BstMBI | GATC | 8 cut(s) | 214, 298, 550, 685, 706, 802, 1093, 1247 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1330, 1429 |
| BstNI | CCWGG | 2 cut(s) | 1502, 1720 |
| BstNSI | RCATGY | 3 cut(s) | 146, 482, 1362 |
| BstSCI | CCNGG | 2 cut(s) | 1500, 1718 |
| BstSFI | CTRYAG | 3 cut(s) | 1475, 1890, 2070 |
| BstV1I | GCAGC | 7 cut(s) | 293, 304, 632, 643, 1076, 1449, 2056 |
| BstX2I | RGATCY | 1 cut(s) | 1247 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1844, 1934, 2024 |
| BstYI | RGATCY | 1 cut(s) | 1247 |
| BtgI | CCRYGG | 2 cut(s) | 1188, 1418 |
| BtsCI | GGATG | 1 cut(s) | 943 |
| BtsI | GCAGTG | 5 cut(s) | 217, 553, 1319, 1365, 2079 |
| BtsIMutI | CAGTG | 7 cut(s) | 37, 217, 553, 960, 1319, 1365, 2079 |
| BveI | ACCTGC | 3 cut(s) | 166, 502, 1897 |
| Cac8I | GCNNGC | 8 cut(s) | 144, 480, 1479, 1567, 1578, 1582, 1818, 1924 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1172 |
| CfoI | GCGC | 1 cut(s) | 1417 |
| Cfr13I | GGNCC | 3 cut(s) | 770, 1045, 1886 |
| Csp6I | GTAC | 5 cut(s) | 45, 241, 381, 577, 1960 |
| CviQI | GTAC | 5 cut(s) | 45, 241, 381, 577, 1960 |
| DdeI | CTNAG | 8 cut(s) | 237, 271, 573, 610, 1018, 1433, 1693, 1773 |
| DpnI | GATC | 8 cut(s) | 216, 300, 552, 687, 708, 804, 1095, 1249 |
| DpnII | GATC | 8 cut(s) | 214, 298, 550, 685, 706, 802, 1093, 1247 |
| Eco130I | CCWWGG | 3 cut(s) | 1179, 1188, 1418 |
| Eco24I | GRGCYC | 3 cut(s) | 138, 474, 1924 |
| Eco32I | GATATC | 1 cut(s) | 852 |
| Eco47I | GGWCC | 3 cut(s) | 770, 1045, 1886 |
| Eco57I | CTGAAG | 9 cut(s) | 78, 414, 738, 885, 1143, 1243, 1509, 1830, 1878 |
| EcoRII | CCWGG | 2 cut(s) | 1500, 1718 |
| EcoRV | GATATC | 1 cut(s) | 852 |
| EcoT14I | CCWWGG | 3 cut(s) | 1179, 1188, 1418 |
| EcoT38I | GRGCYC | 3 cut(s) | 138, 474, 1924 |
| ErhI | CCWWGG | 3 cut(s) | 1179, 1188, 1418 |
| FaqI | GGGAC | 1 cut(s) | 1701 |
| FauI | CCCGC | 1 cut(s) | 174 |
| FauNDI | CATATG | 2 cut(s) | 1663, 1753 |
| FbaI | TGATCA | 3 cut(s) | 214, 550, 706 |
| Fnu4HI | GCNGC | 7 cut(s) | 282, 318, 621, 657, 1065, 1438, 2070 |
| FokI | GGATG | 1 cut(s) | 950 |
| FriOI | GRGCYC | 3 cut(s) | 138, 474, 1924 |
| Fsp4HI | GCNGC | 7 cut(s) | 282, 318, 621, 657, 1065, 1438, 2070 |
| FspBI | CTAG | 4 cut(s) | 105, 761, 855, 1581 |
| GlaI | GCGC | 1 cut(s) | 1416 |
| GluI | GCNGC | 7 cut(s) | 282, 318, 621, 657, 1065, 1438, 2070 |
| GsuI | CTGGAG | 3 cut(s) | 137, 473, 665 |
| HaeII | RGCGCY | 1 cut(s) | 1418 |
| HhaI | GCGC | 1 cut(s) | 1417 |
| Hin6I | GCGC | 1 cut(s) | 1415 |
| HinP1I | GCGC | 1 cut(s) | 1415 |
| HincII | GTYRAC | 4 cut(s) | 523, 730, 1135, 1535 |
| HindII | GTYRAC | 4 cut(s) | 523, 730, 1135, 1535 |
| HindIII | AAGCTT | 2 cut(s) | 60, 396 |
| HphI | GGTGA | 2 cut(s) | 940, 1204 |
| Hpy166II | GTNNAC | 6 cut(s) | 254, 523, 590, 730, 1135, 1535 |
| Hpy188I | TCNGA | 6 cut(s) | 274, 613, 982, 1021, 1247, 1696 |
| Hpy188III | TCNNGA | 7 cut(s) | 689, 806, 1349, 1444, 1789, 1969, 2060 |
| Hpy8I | GTNNAC | 6 cut(s) | 254, 523, 590, 730, 1135, 1535 |
| HpyAV | CCTTC | 7 cut(s) | 225, 289, 561, 745, 913, 1267, 1678 |
| HpyCH4III | ACNGT | 4 cut(s) | 27, 363, 822, 1628 |
| HpyCH4IV | ACGT | 3 cut(s) | 243, 579, 1023 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1330, 1429 |
| HpyF3I | CTNAG | 8 cut(s) | 237, 271, 573, 610, 1018, 1433, 1693, 1773 |
| HpySE526I | ACGT | 3 cut(s) | 243, 579, 1023 |
| HspAI | GCGC | 1 cut(s) | 1415 |
| Ksp22I | TGATCA | 3 cut(s) | 214, 550, 706 |
| Kzo9I | GATC | 8 cut(s) | 214, 298, 550, 685, 706, 802, 1093, 1247 |
| LguI | GCTCTTC | 2 cut(s) | 1607, 1806 |
| LmnI | GCTCC | 8 cut(s) | 133, 314, 469, 637, 653, 1061, 1514, 1728 |
| Lsp1109I | GCAGC | 7 cut(s) | 293, 304, 632, 643, 1076, 1449, 2056 |
| LweI | GCATC | 6 cut(s) | 151, 487, 838, 1037, 1490, 1795 |
| MaeI | CTAG | 4 cut(s) | 105, 761, 855, 1581 |
| MaeII | ACGT | 3 cut(s) | 243, 579, 1023 |
| MaeIII | GTNAC | 6 cut(s) | 124, 460, 490, 877, 1361, 1999 |
| MalI | GATC | 8 cut(s) | 216, 300, 552, 687, 708, 804, 1095, 1249 |
| MboI | GATC | 8 cut(s) | 214, 298, 550, 685, 706, 802, 1093, 1247 |
| MfeI | CAATTG | 3 cut(s) | 597, 1334, 1727 |
| MflI | RGATCY | 1 cut(s) | 1247 |
| MhlI | GDGCHC | 3 cut(s) | 138, 474, 1924 |
| MlyI | GAGTC | 7 cut(s) | 4, 128, 340, 464, 1517, 1723, 1726 |
| MseI | TTAA | 5 cut(s) | 735, 1241, 1410, 1878, 1904 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1803, 1842, 1932, 1983, 2022 |
| MspA1I | CMGCKG | 1 cut(s) | 1067 |
| MspR9I | CCNGG | 2 cut(s) | 1502, 1720 |
| MunI | CAATTG | 3 cut(s) | 597, 1334, 1727 |
| Mva1269I | GAATGC | 2 cut(s) | 1345, 1423 |
| MvaI | CCWGG | 2 cut(s) | 1502, 1720 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1330, 1429 |
| NcoI | CCATGG | 2 cut(s) | 1188, 1418 |
| NdeI | CATATG | 2 cut(s) | 1663, 1753 |
| NdeII | GATC | 8 cut(s) | 214, 298, 550, 685, 706, 802, 1093, 1247 |
| NheI | GCTAGC | 1 cut(s) | 1580 |
| NlaIV | GGNNCC | 5 cut(s) | 135, 471, 889, 1249, 1724 |
| NmuCI | GTSAC | 4 cut(s) | 124, 460, 490, 877 |
| NspI | RCATGY | 3 cut(s) | 146, 482, 1362 |
| NspV | TTCGAA | 1 cut(s) | 917 |
| PaeI | GCATGC | 2 cut(s) | 146, 482 |
| PaqCI | CACCTGC | 2 cut(s) | 166, 502 |
| PciSI | GCTCTTC | 2 cut(s) | 1607, 1806 |
| PctI | GAATGC | 2 cut(s) | 1345, 1423 |
| PfeI | GAWTC | 7 cut(s) | 19, 76, 355, 412, 1175, 1291, 1658 |
| PflFI | GACNNNGTC | 1 cut(s) | 1526 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1058 |
| PfoI | TCCNGGA | 1 cut(s) | 1500 |
| PkrI | GCNGC | 7 cut(s) | 283, 319, 622, 658, 1066, 1439, 2071 |
| PleI | GAGTC | 7 cut(s) | 4, 127, 340, 463, 1517, 1722, 1726 |
| PpsI | GAGTC | 7 cut(s) | 4, 127, 340, 463, 1517, 1722, 1726 |
| Psp6I | CCWGG | 2 cut(s) | 1500, 1718 |
| PspGI | CCWGG | 2 cut(s) | 1500, 1718 |
| PspN4I | GGNNCC | 5 cut(s) | 135, 471, 889, 1249, 1724 |
| PspPI | GGNCC | 3 cut(s) | 770, 1045, 1886 |
| PstI | CTGCAG | 3 cut(s) | 1479, 1894, 2074 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1172 |
| PsuI | RGATCY | 1 cut(s) | 1247 |
| PsyI | GACNNNGTC | 1 cut(s) | 1526 |
| PvuII | CAGCTG | 1 cut(s) | 1067 |
| RsaI | GTAC | 5 cut(s) | 46, 242, 382, 578, 1961 |
| RsaNI | GTAC | 5 cut(s) | 45, 241, 381, 577, 1960 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1803, 1842, 1932, 1983, 2022 |
| SapI | GCTCTTC | 2 cut(s) | 1607, 1806 |
| SaqAI | TTAA | 5 cut(s) | 735, 1241, 1410, 1878, 1904 |
| SatI | GCNGC | 7 cut(s) | 282, 318, 621, 657, 1065, 1438, 2070 |
| Sau3AI | GATC | 8 cut(s) | 214, 298, 550, 685, 706, 802, 1093, 1247 |
| Sau96I | GGNCC | 3 cut(s) | 770, 1045, 1886 |
| SchI | GAGTC | 7 cut(s) | 4, 128, 340, 464, 1517, 1723, 1726 |
| ScrFI | CCNGG | 2 cut(s) | 1502, 1720 |
| SduI | GDGCHC | 3 cut(s) | 138, 474, 1924 |
| SfaNI | GCATC | 6 cut(s) | 151, 487, 838, 1037, 1490, 1795 |
| SfcI | CTRYAG | 3 cut(s) | 1475, 1890, 2070 |
| SfuI | TTCGAA | 1 cut(s) | 917 |
| SinI | GGWCC | 3 cut(s) | 770, 1045, 1886 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1803, 1842, 1932, 1983, 2022 |
| SpeI | ACTAGT | 1 cut(s) | 104 |
| SphI | GCATGC | 2 cut(s) | 146, 482 |
| SsiI | CCGC | 1 cut(s) | 181 |
| SspMI | CTAG | 4 cut(s) | 105, 761, 855, 1581 |
| StyD4I | CCNGG | 2 cut(s) | 1500, 1718 |
| StyI | CCWWGG | 3 cut(s) | 1179, 1188, 1418 |
| TaaI | ACNGT | 4 cut(s) | 27, 363, 822, 1628 |
| TaiI | ACGT | 3 cut(s) | 246, 582, 1026 |
| TaqI | TCGA | 2 cut(s) | 375, 917 |
| TfiI | GAWTC | 7 cut(s) | 19, 76, 355, 412, 1175, 1291, 1658 |
| Tru1I | TTAA | 5 cut(s) | 735, 1241, 1410, 1878, 1904 |
| Tru9I | TTAA | 5 cut(s) | 735, 1241, 1410, 1878, 1904 |
| TscAI | CASTG | 7 cut(s) | 37, 217, 553, 967, 1326, 1372, 2079 |
| TseFI | GTSAC | 4 cut(s) | 124, 460, 490, 877 |
| TseI | GCWGC | 7 cut(s) | 281, 317, 620, 656, 1064, 1437, 2069 |
| Tsp45I | GTSAC | 4 cut(s) | 124, 460, 490, 877 |
| TspGWI | ACGGA | 4 cut(s) | 112, 448, 984, 1535 |
| TspRI | CASTG | 7 cut(s) | 37, 217, 553, 967, 1326, 1372, 2079 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1526 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1058 |
| VpaK11BI | GGWCC | 3 cut(s) | 770, 1045, 1886 |
| XapI | RAATTY | 5 cut(s) | 1555, 1594, 1849, 1869, 2029 |
| XceI | RCATGY | 3 cut(s) | 146, 482, 1362 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1055, 1186 |
| XspI | CTAG | 4 cut(s) | 105, 761, 855, 1581 |