Rmu_sc0006106.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006106.1
OG0017235
Physical Location & Seq
Reverse (-)
54078 .. 56181
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006106.1_g000013.1.cds

Sequence Viewer

Length: 1824 bp
atggaggagactctgctgattccacagtcctgtgaagttgaaagtaccattagtactgaagcttatgaagttgagaatcttcaagctcaaaatgagatgactactagtgttgaactggattccgtcactttggagcccttgcatgctgatagcttgactgatgctttgacagagcaggtgtgggttgatgagcattatgtgtgttgcggtgatcatggaacaggaggaaggaccgagtacgttgtgtgtggacatacaattgggagtgtctcagacattgcagcttttgaagagaaggatcaactggaaattggagctgccgacaccattgtagaagtagaggagactctgctgattccacagtccaatgaagtcgaaagtaccattactactgaagcttatgaagttgagaatcttcaagctcaaaacgagatgactactcgtgttgaactggagtccgtcactttggagcccttgcatgctgatagcttgactgatgctttgacagagcaggtgcgggttgatgagcattatgtgtgtgattgcagtgatcatggaacaggaggaaggactgagtacgttgtgtgtggacatacaattgggagtgtctcagacattgcagcttttgaagaaaaggagcaactggagattggagctgctgacagcattggagaagtagaggttgatctcgaatatgaagaagttgatcaacaagctgaagcaccagttgacattaaggatttggataagaagggtcagctaggggttggagcagtggggaacattgtagaagtagatttggatcaagaatatgaaaaaatgtgtgagcatcttgaagctcaaagtgagatatctagtggtgctgaagtggatgataacggaacaatgtctgactatgaagtgtttggaaatactatggggagtatctccgacgttgcatcttttgaagaaaaggaccagccagagattggagcagctgatgacattggagaaatagtggttgatctcaaatataaagttgatgaagaggctgaagaaaaagttgacaatgatgaggatttggaagttcagggtctgccagaaactgaatccaaggtttccatggtgaatgttgtagttctgtctataatgatttcagcattgatttctgtcttaatcggatccacagccttcagttatgtgaagaaaggaagctcaaccttgaatcttgctacctctatgtgccaacaatcactgccaaataagcaattgaatgcaagtcctgatgtggcatgtaacactgctcacattttccagcacataccctcttcttggaactggattaaagcgccatggcattctaagctgagcagcttccagaagagttcatcatattgcttgataggactgcaggcatcaactgaagatgaagtccaggagaagagaggagctacggactctgtctgtcaacaaccattgctgaccaaaaatttgagtgcaagctctatgccagctagcaccacgcagaattttcattgtgaaatgaagagcttacagaacagttcattttaccaaacacaaggactgaatgaatcatatgaagctgaaaggcaggagaagggtggctcagaaagaacttttgaagagagtccctggctccaattgactcctcaatgggattactcatatgggagttttacaaccactgagaaaagcataatcaagaatggacatgcagatgatgagttaatttctcctcaatgggctcaccatctttatgggagttttacaacacaggagacatacccaatcaagaatgtgagtatccacaatgctcattcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

607

Amino Acids

66.74

Weight (kDa)

4.18

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03071
rosa_chinensis RchiOBHm_Chr6g0247941
rosa_laevigata RLG00000015171
rosa_multiflora Rmu_sc0006106.1_g000013
rosa_roxburghii Rroxscaffold_180G00433170 Rroxscaffold_7G00213570
rosa_rugosa Rorug05G0529600
rosa_samantha Rh6AG044400 Rh6BG039200 Rh6BG039300 Rh6CG038000 Rh6DG035000
rosa_wichuraiana Rw6G003860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 166, 502
Acc36I ACCTGC 2 cut(s) 166, 502
AccB7I CCANNNNNTGG 1 cut(s) 968
AciI CCGC 2 cut(s) 207, 517
AclWI GGATC 4 cut(s) 306, 810, 1155, 1168
AcsI RAATTY 2 cut(s) 1468, 1507
AcuI CTGAAG 7 cut(s) 78, 414, 738, 885, 1053, 1156, 1422
AfaI GTAC 5 cut(s) 46, 55, 239, 382, 578
AfiI CCNNNNNNNGG 2 cut(s) 968, 1311
AhlI ACTAGT 1 cut(s) 104
AjnI CCWGG 2 cut(s) 1413, 1631
Alw26I GTCTC 5 cut(s) 2, 274, 338, 613, 1772
AlwI GGATC 4 cut(s) 306, 810, 1155, 1168
AlwNI CAGNNNCTG 2 cut(s) 1075, 1085
ApeKI GCWGC 6 cut(s) 281, 317, 620, 656, 974, 1350
ApoI RAATTY 2 cut(s) 1468, 1507
ArsI GACNNNNNNTTYG 6 cut(s) 148, 180, 484, 516, 1453, 1485
AspLEI GCGC 1 cut(s) 1330
AspS9I GGNCC 2 cut(s) 231, 955
AsuHPI GGTGA 3 cut(s) 221, 1117, 1739
AsuNHI GCTAGC 1 cut(s) 1493
AvaII GGWCC 2 cut(s) 231, 955
BamHI GGATCC 1 cut(s) 1160
BanII GRGCYC 3 cut(s) 138, 474, 1747
BauI CACGAG 1 cut(s) 441
BbvI GCAGC 6 cut(s) 293, 304, 632, 643, 986, 1362
BccI CCATC 1 cut(s) 1758
BciT130I CCWGG 2 cut(s) 1415, 1633
BciVI GTATCC 1 cut(s) 1814
BclI TGATCA 3 cut(s) 211, 550, 706
BcoDI GTCTC 5 cut(s) 2, 274, 338, 613, 1772
BcuI ACTAGT 1 cut(s) 104
BfaI CTAG 5 cut(s) 105, 761, 855, 1494, 1822
BfmI CTRYAG 1 cut(s) 1388
BfoI RGCGCY 1 cut(s) 1331
BfuAI ACCTGC 2 cut(s) 166, 502
BfuI GTATCC 1 cut(s) 1814
BisI GCNGC 6 cut(s) 282, 318, 621, 657, 975, 1351
BlpI GCTNAGC 1 cut(s) 1346
BlsI GCNGC 6 cut(s) 283, 319, 622, 658, 976, 1352
BmcAI AGTACT 1 cut(s) 55
Bme1390I CCNGG 2 cut(s) 1415, 1633
Bme18I GGWCC 2 cut(s) 231, 955
BmgT120I GGNCC 2 cut(s) 231, 955
BmiI GGNNCC 4 cut(s) 135, 471, 1162, 1637
BmrFI CCNGG 2 cut(s) 1415, 1633
BmsI GCATC 5 cut(s) 151, 487, 838, 947, 1403
BmtI GCTAGC 1 cut(s) 1497
BpmI CTGGAG 2 cut(s) 473, 665
Bpu1102I GCTNAGC 1 cut(s) 1346
BsaBI GATNNNNATC 1 cut(s) 801
BsaJI CCNNGG 4 cut(s) 1092, 1101, 1331, 1631
BsaXI ACNNNNNCTCC 2 cut(s) 981, 1011
Bsc4I CCNNNNNNNGG 2 cut(s) 968, 1311
Bse1I ACTGG 6 cut(s) 120, 309, 456, 648, 725, 1322
Bse3DI GCAATG 3 cut(s) 276, 615, 1454
Bse8I GATNNNNATC 1 cut(s) 801
BseBI CCWGG 2 cut(s) 1415, 1633
BseDI CCNNGG 4 cut(s) 1092, 1101, 1331, 1631
BseGI GGATG 1 cut(s) 877
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 2 cut(s) 968, 1311
BseMI GCAATG 3 cut(s) 276, 615, 1454
BseMII CTCAG 6 cut(s) 285, 564, 624, 1337, 1620, 1677
BseNI ACTGG 6 cut(s) 120, 309, 456, 648, 725, 1322
BseRI GAGGAG 5 cut(s) 20, 356, 1440, 1638, 1725
BseXI GCAGC 6 cut(s) 293, 304, 632, 643, 986, 1362
BslFI GGGAC 1 cut(s) 1614
BslI CCNNNNNNNGG 2 cut(s) 968, 1311
BsmAI GTCTC 5 cut(s) 2, 274, 338, 613, 1772
BsmFI GGGAC 1 cut(s) 1614
BsmI GAATGC 2 cut(s) 1258, 1336
Bsp1286I GDGCHC 3 cut(s) 138, 474, 1747
Bsp143I GATC 8 cut(s) 211, 298, 550, 685, 706, 802, 1003, 1160
Bsp1720I GCTNAGC 1 cut(s) 1346
Bsp19I CCATGG 2 cut(s) 1101, 1331
BspACI CCGC 2 cut(s) 207, 517
BspCNI CTCAG 6 cut(s) 284, 565, 623, 1338, 1619, 1678
BspLI GGNNCC 4 cut(s) 135, 471, 1162, 1637
BspMAI CTGCAG 1 cut(s) 1392
BspMI ACCTGC 2 cut(s) 166, 502
BspOI GCTAGC 1 cut(s) 1497
BspPI GGATC 4 cut(s) 306, 810, 1155, 1168
BspQI GCTCTTC 1 cut(s) 1520
BsrDI GCAATG 3 cut(s) 276, 615, 1454
BsrI ACTGG 6 cut(s) 120, 309, 456, 648, 725, 1322
BssECI CCNNGG 4 cut(s) 1092, 1101, 1331, 1631
BssMI GATC 8 cut(s) 211, 298, 550, 685, 706, 802, 1003, 1160
BssSI CACGAG 1 cut(s) 441
BssT1I CCWWGG 3 cut(s) 1092, 1101, 1331
Bst2BI CACGAG 1 cut(s) 441
Bst2UI CCWGG 2 cut(s) 1415, 1633
Bst4CI ACNGT 3 cut(s) 27, 363, 1541
Bst6I CTCTTC 7 cut(s) 285, 1020, 1312, 1355, 1415, 1520, 1617
BstC8I GCNNGC 6 cut(s) 144, 480, 1392, 1480, 1491, 1495
BstDEI CTNAG 7 cut(s) 271, 573, 610, 1341, 1346, 1606, 1686
BstDSI CCRYGG 2 cut(s) 1101, 1331
BstF5I GGATG 1 cut(s) 877
BstH2I RGCGCY 1 cut(s) 1331
BstHHI GCGC 1 cut(s) 1330
BstKTI GATC 8 cut(s) 214, 301, 553, 688, 709, 805, 1006, 1163
BstMAI GTCTC 5 cut(s) 2, 274, 338, 613, 1772
BstMBI GATC 8 cut(s) 211, 298, 550, 685, 706, 802, 1003, 1160
BstMWI GCNNNNNNNGC 2 cut(s) 1243, 1342
BstNI CCWGG 2 cut(s) 1415, 1633
BstNSI RCATGY 4 cut(s) 146, 482, 1275, 1715
BstSCI CCNGG 2 cut(s) 1413, 1631
BstSFI CTRYAG 1 cut(s) 1388
BstV1I GCAGC 6 cut(s) 293, 304, 632, 643, 986, 1362
BstX2I RGATCY 1 cut(s) 1160
BstXI CCANNNNNNTGG 1 cut(s) 1757
BstYI RGATCY 1 cut(s) 1160
BsuI GTATCC 1 cut(s) 1814
BtgI CCRYGG 2 cut(s) 1101, 1331
BtsCI GGATG 1 cut(s) 877
BtsI GCAGTG 4 cut(s) 553, 780, 1232, 1278
BtsIMutI CAGTG 5 cut(s) 553, 780, 1232, 1278, 1683
BveI ACCTGC 2 cut(s) 166, 502
Cac8I GCNNGC 6 cut(s) 144, 480, 1392, 1480, 1491, 1495
CaiI CAGNNNCTG 2 cut(s) 1075, 1085
CfoI GCGC 1 cut(s) 1330
Cfr13I GGNCC 2 cut(s) 231, 955
Csp6I GTAC 5 cut(s) 45, 54, 238, 381, 577
CviAII CATG 8 cut(s) 143, 215, 479, 554, 1102, 1272, 1332, 1712
CviQI GTAC 5 cut(s) 45, 54, 238, 381, 577
DdeI CTNAG 7 cut(s) 271, 573, 610, 1341, 1346, 1606, 1686
DpnI GATC 8 cut(s) 213, 300, 552, 687, 708, 804, 1005, 1162
DpnII GATC 8 cut(s) 211, 298, 550, 685, 706, 802, 1003, 1160
Eam1104I CTCTTC 7 cut(s) 285, 1020, 1312, 1355, 1415, 1520, 1617
EarI CTCTTC 7 cut(s) 285, 1020, 1312, 1355, 1415, 1520, 1617
Eco130I CCWWGG 3 cut(s) 1092, 1101, 1331
Eco24I GRGCYC 3 cut(s) 138, 474, 1747
Eco32I GATATC 1 cut(s) 852
Eco47I GGWCC 2 cut(s) 231, 955
Eco57I CTGAAG 7 cut(s) 78, 414, 738, 885, 1053, 1156, 1422
EcoRII CCWGG 2 cut(s) 1413, 1631
EcoRV GATATC 1 cut(s) 852
EcoT14I CCWWGG 3 cut(s) 1092, 1101, 1331
EcoT38I GRGCYC 3 cut(s) 138, 474, 1747
ErhI CCWWGG 3 cut(s) 1092, 1101, 1331
FaeI CATG 8 cut(s) 146, 218, 482, 557, 1105, 1275, 1335, 1715
FaqI GGGAC 1 cut(s) 1614
FatI CATG 8 cut(s) 142, 214, 478, 553, 1101, 1271, 1331, 1711
FauI CCCGC 1 cut(s) 510
FauNDI CATATG 2 cut(s) 1576, 1666
FbaI TGATCA 3 cut(s) 211, 550, 706
Fnu4HI GCNGC 6 cut(s) 282, 318, 621, 657, 975, 1351
FokI GGATG 1 cut(s) 884
FriOI GRGCYC 3 cut(s) 138, 474, 1747
Fsp4HI GCNGC 6 cut(s) 282, 318, 621, 657, 975, 1351
FspBI CTAG 5 cut(s) 105, 761, 855, 1494, 1822
GlaI GCGC 1 cut(s) 1329
GluI GCNGC 6 cut(s) 282, 318, 621, 657, 975, 1351
GsuI CTGGAG 2 cut(s) 473, 665
HaeII RGCGCY 1 cut(s) 1331
HhaI GCGC 1 cut(s) 1330
Hin1II CATG 8 cut(s) 146, 218, 482, 557, 1105, 1275, 1335, 1715
Hin6I GCGC 1 cut(s) 1328
HinP1I GCGC 1 cut(s) 1328
HincII GTYRAC 3 cut(s) 730, 1045, 1448
HindII GTYRAC 3 cut(s) 730, 1045, 1448
HindIII AAGCTT 2 cut(s) 60, 396
HphI GGTGA 3 cut(s) 221, 1117, 1739
Hpy166II GTNNAC 5 cut(s) 251, 590, 730, 1045, 1448
Hpy188I TCNGA 6 cut(s) 274, 613, 892, 931, 1160, 1609
Hpy188III TCNNGA 7 cut(s) 689, 806, 833, 1262, 1357, 1702, 1792
Hpy8I GTNNAC 5 cut(s) 251, 590, 730, 1045, 1448
Hpy99I CGWCG 1 cut(s) 935
HpyAV CCTTC 6 cut(s) 222, 289, 561, 745, 1180, 1591
HpyCH4III ACNGT 3 cut(s) 27, 363, 1541
HpyCH4IV ACGT 3 cut(s) 240, 579, 933
HpyF10VI GCNNNNNNNGC 2 cut(s) 1243, 1342
HpyF3I CTNAG 7 cut(s) 271, 573, 610, 1341, 1346, 1606, 1686
HpySE526I ACGT 3 cut(s) 240, 579, 933
Hsp92II CATG 8 cut(s) 146, 218, 482, 557, 1105, 1275, 1335, 1715
HspAI GCGC 1 cut(s) 1328
Ksp22I TGATCA 3 cut(s) 211, 550, 706
Kzo9I GATC 8 cut(s) 211, 298, 550, 685, 706, 802, 1003, 1160
LguI GCTCTTC 1 cut(s) 1520
LmnI GCTCC 9 cut(s) 133, 314, 469, 637, 653, 770, 971, 1427, 1641
Lsp1109I GCAGC 6 cut(s) 293, 304, 632, 643, 986, 1362
LweI GCATC 5 cut(s) 151, 487, 838, 947, 1403
MaeI CTAG 5 cut(s) 105, 761, 855, 1494, 1822
MaeII ACGT 3 cut(s) 240, 579, 933
MaeIII GTNAC 3 cut(s) 124, 460, 1274
MalI GATC 8 cut(s) 213, 300, 552, 687, 708, 804, 1005, 1162
MboI GATC 8 cut(s) 211, 298, 550, 685, 706, 802, 1003, 1160
MfeI CAATTG 4 cut(s) 258, 597, 1247, 1640
MflI RGATCY 1 cut(s) 1160
MhlI GDGCHC 3 cut(s) 138, 474, 1747
MluCI AATT 8 cut(s) 258, 309, 597, 1247, 1468, 1507, 1640, 1728
MlyI GAGTC 6 cut(s) 4, 340, 464, 1430, 1636, 1639
MmeI TCCRAC 2 cut(s) 748, 954
MseI TTAA 4 cut(s) 735, 1154, 1323, 1727
MslI CAYNNNNRTG 2 cut(s) 1716, 1755
MspA1I CMGCKG 1 cut(s) 977
MspR9I CCNGG 2 cut(s) 1415, 1633
MunI CAATTG 4 cut(s) 258, 597, 1247, 1640
Mva1269I GAATGC 2 cut(s) 1258, 1336
MvaI CCWGG 2 cut(s) 1415, 1633
MwoI GCNNNNNNNGC 2 cut(s) 1243, 1342
NcoI CCATGG 2 cut(s) 1101, 1331
NdeI CATATG 2 cut(s) 1576, 1666
NdeII GATC 8 cut(s) 211, 298, 550, 685, 706, 802, 1003, 1160
NheI GCTAGC 1 cut(s) 1493
NlaIII CATG 8 cut(s) 146, 218, 482, 557, 1105, 1275, 1335, 1715
NlaIV GGNNCC 4 cut(s) 135, 471, 1162, 1637
NmuCI GTSAC 2 cut(s) 124, 460
NspI RCATGY 4 cut(s) 146, 482, 1275, 1715
PaeI GCATGC 2 cut(s) 146, 482
PaqCI CACCTGC 2 cut(s) 166, 502
PciSI GCTCTTC 1 cut(s) 1520
PctI GAATGC 2 cut(s) 1258, 1336
PfeI GAWTC 8 cut(s) 19, 76, 119, 355, 412, 1088, 1204, 1571
PflFI GACNNNGTC 1 cut(s) 1439
PflMI CCANNNNNTGG 1 cut(s) 968
PfoI TCCNGGA 1 cut(s) 1413
PkrI GCNGC 6 cut(s) 283, 319, 622, 658, 976, 1352
PleI GAGTC 6 cut(s) 4, 340, 463, 1430, 1635, 1639
PpsI GAGTC 6 cut(s) 4, 340, 463, 1430, 1635, 1639
Psp6I CCWGG 2 cut(s) 1413, 1631
PspGI CCWGG 2 cut(s) 1413, 1631
PspN4I GGNNCC 4 cut(s) 135, 471, 1162, 1637
PspPI GGNCC 2 cut(s) 231, 955
PstI CTGCAG 1 cut(s) 1392
PstNI CAGNNNCTG 2 cut(s) 1075, 1085
PsuI RGATCY 1 cut(s) 1160
PsyI GACNNNGTC 1 cut(s) 1439
PvuII CAGCTG 1 cut(s) 977
RsaI GTAC 5 cut(s) 46, 55, 239, 382, 578
RsaNI GTAC 5 cut(s) 45, 54, 238, 381, 577
RseI CAYNNNNRTG 2 cut(s) 1716, 1755
SapI GCTCTTC 1 cut(s) 1520
SaqAI TTAA 4 cut(s) 735, 1154, 1323, 1727
SatI GCNGC 6 cut(s) 282, 318, 621, 657, 975, 1351
Sau3AI GATC 8 cut(s) 211, 298, 550, 685, 706, 802, 1003, 1160
Sau96I GGNCC 2 cut(s) 231, 955
ScaI AGTACT 1 cut(s) 55
SchI GAGTC 6 cut(s) 4, 340, 464, 1430, 1636, 1639
ScrFI CCNGG 2 cut(s) 1415, 1633
SduI GDGCHC 3 cut(s) 138, 474, 1747
SfaNI GCATC 5 cut(s) 151, 487, 838, 947, 1403
SfcI CTRYAG 1 cut(s) 1388
SinI GGWCC 2 cut(s) 231, 955
SmiMI CAYNNNNRTG 2 cut(s) 1716, 1755
SpeI ACTAGT 1 cut(s) 104
SphI GCATGC 2 cut(s) 146, 482
Sse9I AATT 8 cut(s) 258, 309, 597, 1247, 1468, 1507, 1640, 1728
SsiI CCGC 2 cut(s) 207, 517
SspMI CTAG 5 cut(s) 105, 761, 855, 1494, 1822
StyD4I CCNGG 2 cut(s) 1413, 1631
StyI CCWWGG 3 cut(s) 1092, 1101, 1331
TaaI ACNGT 3 cut(s) 27, 363, 1541
TaiI ACGT 3 cut(s) 243, 582, 936
TaqI TCGA 2 cut(s) 375, 690
TaqII GACCGA 1 cut(s) 248
TasI AATT 8 cut(s) 258, 309, 597, 1247, 1468, 1507, 1640, 1728
TatI WGTACW 1 cut(s) 53
TfiI GAWTC 8 cut(s) 19, 76, 119, 355, 412, 1088, 1204, 1571
Tru1I TTAA 4 cut(s) 735, 1154, 1323, 1727
Tru9I TTAA 4 cut(s) 735, 1154, 1323, 1727
TscAI CASTG 5 cut(s) 553, 780, 1239, 1285, 1690
TseFI GTSAC 2 cut(s) 124, 460
TseI GCWGC 6 cut(s) 281, 317, 620, 656, 974, 1350
Tsp45I GTSAC 2 cut(s) 124, 460
TspGWI ACGGA 4 cut(s) 112, 448, 894, 1448
TspRI CASTG 5 cut(s) 553, 780, 1239, 1285, 1690
Tth111I GACNNNGTC 1 cut(s) 1439
Van91I CCANNNNNTGG 1 cut(s) 968
VpaK11BI GGWCC 2 cut(s) 231, 955
XapI RAATTY 2 cut(s) 1468, 1507
XceI RCATGY 4 cut(s) 146, 482, 1275, 1715
XcmI CCANNNNNNNNNTGG 2 cut(s) 965, 1099
XspI CTAG 5 cut(s) 105, 761, 855, 1494, 1822
ZrmI AGTACT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.