No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g03071 |
| rosa_chinensis | RchiOBHm_Chr6g0247941 |
| rosa_laevigata | RLG00000015171 |
| rosa_multiflora | Rmu_sc0006106.1_g000013 |
| rosa_roxburghii | Rroxscaffold_180G00433170 Rroxscaffold_7G00213570 |
| rosa_rugosa | Rorug05G0529600 |
| rosa_samantha | Rh6AG044400 Rh6BG039200 Rh6BG039300 Rh6CG038000 Rh6DG035000 |
| rosa_wichuraiana | Rw6G003860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 70 |
| Acc36I | ACCTGC | 1 cut(s) | 70 |
| AccI | GTMKAC | 1 cut(s) | 539 |
| AciI | CCGC | 1 cut(s) | 85 |
| AclWI | GGATC | 2 cut(s) | 213, 495 |
| AcuI | CTGAAG | 2 cut(s) | 306, 570 |
| AfaI | GTAC | 1 cut(s) | 146 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 582 |
| AgsI | TTSAA | 4 cut(s) | 17, 197, 404, 521 |
| AluBI | AGCT | 7 cut(s) | 57, 191, 211, 284, 328, 445, 524 |
| AluI | AGCT | 7 cut(s) | 57, 191, 211, 284, 328, 445, 524 |
| Alw26I | GTCTC | 1 cut(s) | 181 |
| AlwI | GGATC | 2 cut(s) | 213, 495 |
| ApeKI | GCWGC | 2 cut(s) | 188, 572 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 52, 84 |
| AsuII | TTCGAA | 1 cut(s) | 36 |
| BauI | CACGAG | 1 cut(s) | 9 |
| BbvI | GCAGC | 2 cut(s) | 200, 559 |
| BccI | CCATC | 1 cut(s) | 614 |
| BclI | TGATCA | 2 cut(s) | 118, 274 |
| BcoDI | GTCTC | 1 cut(s) | 181 |
| BfaI | CTAG | 1 cut(s) | 446 |
| BfuAI | ACCTGC | 1 cut(s) | 70 |
| BisI | GCNGC | 2 cut(s) | 189, 573 |
| BlsI | GCNGC | 2 cut(s) | 190, 574 |
| BmsI | GCATC | 1 cut(s) | 523 |
| BpmI | CTGGAG | 3 cut(s) | 41, 233, 350 |
| Bpu14I | TTCGAA | 1 cut(s) | 36 |
| BsaBI | GATNNNNATC | 2 cut(s) | 486, 624 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 596, 626 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 582 |
| Bse1I | ACTGG | 4 cut(s) | 24, 293, 410, 547 |
| Bse3DI | GCAATG | 1 cut(s) | 183 |
| Bse8I | GATNNNNATC | 2 cut(s) | 486, 624 |
| BseJI | GATNNNNATC | 2 cut(s) | 486, 624 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 582 |
| BseMI | GCAATG | 1 cut(s) | 183 |
| BseMII | CTCAG | 1 cut(s) | 192 |
| BseNI | ACTGG | 4 cut(s) | 24, 293, 410, 547 |
| BseXI | GCAGC | 2 cut(s) | 200, 559 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 582 |
| BsmAI | GTCTC | 1 cut(s) | 181 |
| Bsp119I | TTCGAA | 1 cut(s) | 36 |
| Bsp143I | GATC | 6 cut(s) | 118, 205, 253, 274, 370, 487 |
| BspACI | CCGC | 1 cut(s) | 85 |
| BspCNI | CTCAG | 1 cut(s) | 191 |
| BspMI | ACCTGC | 1 cut(s) | 70 |
| BspPI | GGATC | 2 cut(s) | 213, 495 |
| BspT104I | TTCGAA | 1 cut(s) | 36 |
| BsrDI | GCAATG | 1 cut(s) | 183 |
| BsrI | ACTGG | 4 cut(s) | 24, 293, 410, 547 |
| BssMI | GATC | 6 cut(s) | 118, 205, 253, 274, 370, 487 |
| BssSI | CACGAG | 1 cut(s) | 9 |
| Bst2BI | CACGAG | 1 cut(s) | 9 |
| Bst4CI | ACNGT | 1 cut(s) | 507 |
| BstBI | TTCGAA | 1 cut(s) | 36 |
| BstC8I | GCNNGC | 2 cut(s) | 48, 512 |
| BstDEI | CTNAG | 2 cut(s) | 141, 178 |
| BstKTI | GATC | 6 cut(s) | 121, 208, 256, 277, 373, 490 |
| BstMAI | GTCTC | 1 cut(s) | 181 |
| BstMBI | GATC | 6 cut(s) | 118, 205, 253, 274, 370, 487 |
| BstNSI | RCATGY | 1 cut(s) | 50 |
| BstV1I | GCAGC | 2 cut(s) | 200, 559 |
| BtsI | GCAGTG | 2 cut(s) | 121, 649 |
| BtsIMutI | CAGTG | 2 cut(s) | 121, 649 |
| BveI | ACCTGC | 1 cut(s) | 70 |
| Cac8I | GCNNGC | 2 cut(s) | 48, 512 |
| Csp6I | GTAC | 1 cut(s) | 145 |
| CviAII | CATG | 3 cut(s) | 47, 122, 592 |
| CviJI | RGCY | 9 cut(s) | 57, 191, 211, 284, 328, 445, 524, 572, 624 |
| CviKI_1 | RGCY | 9 cut(s) | 57, 191, 211, 284, 328, 445, 524, 572, 624 |
| CviQI | GTAC | 1 cut(s) | 145 |
| DdeI | CTNAG | 2 cut(s) | 141, 178 |
| DpnI | GATC | 6 cut(s) | 120, 207, 255, 276, 372, 489 |
| DpnII | GATC | 6 cut(s) | 118, 205, 253, 274, 370, 487 |
| Eco57I | CTGAAG | 2 cut(s) | 306, 570 |
| FaeI | CATG | 3 cut(s) | 50, 125, 595 |
| FaiI | YATR | 9 cut(s) | 48, 102, 123, 156, 162, 264, 381, 498, 593 |
| FatI | CATG | 3 cut(s) | 46, 121, 591 |
| FauI | CCCGC | 1 cut(s) | 78 |
| FbaI | TGATCA | 2 cut(s) | 118, 274 |
| FblI | GTMKAC | 1 cut(s) | 539 |
| Fnu4HI | GCNGC | 2 cut(s) | 189, 573 |
| Fsp4HI | GCNGC | 2 cut(s) | 189, 573 |
| FspBI | CTAG | 1 cut(s) | 446 |
| GluI | GCNGC | 2 cut(s) | 189, 573 |
| GsuI | CTGGAG | 3 cut(s) | 41, 233, 350 |
| Hin1II | CATG | 3 cut(s) | 50, 125, 595 |
| HincII | GTYRAC | 2 cut(s) | 298, 415 |
| HindII | GTYRAC | 2 cut(s) | 298, 415 |
| HinfI | GANTC | 2 cut(s) | 23, 599 |
| Hpy166II | GTNNAC | 3 cut(s) | 298, 415, 540 |
| Hpy188I | TCNGA | 2 cut(s) | 181, 604 |
| Hpy188III | TCNNGA | 2 cut(s) | 257, 374 |
| Hpy8I | GTNNAC | 3 cut(s) | 298, 415, 540 |
| HpyAV | CCTTC | 3 cut(s) | 129, 313, 430 |
| HpyCH4III | ACNGT | 1 cut(s) | 507 |
| HpyCH4IV | ACGT | 1 cut(s) | 147 |
| HpyCH4V | TGCA | 5 cut(s) | 46, 114, 188, 580, 642 |
| HpyF3I | CTNAG | 2 cut(s) | 141, 178 |
| HpySE526I | ACGT | 1 cut(s) | 147 |
| Hsp92II | CATG | 3 cut(s) | 50, 125, 595 |
| Ksp22I | TGATCA | 2 cut(s) | 118, 274 |
| Kzo9I | GATC | 6 cut(s) | 118, 205, 253, 274, 370, 487 |
| LmnI | GCTCC | 1 cut(s) | 76 |
| LpnPI | CCDG | 8 cut(s) | 5, 65, 114, 197, 306, 314, 423, 528 |
| Lsp1109I | GCAGC | 2 cut(s) | 200, 559 |
| LweI | GCATC | 1 cut(s) | 523 |
| MaeI | CTAG | 1 cut(s) | 446 |
| MaeII | ACGT | 1 cut(s) | 147 |
| MaeIII | GTNAC | 2 cut(s) | 28, 562 |
| MalI | GATC | 6 cut(s) | 120, 207, 255, 276, 372, 489 |
| MboI | GATC | 6 cut(s) | 118, 205, 253, 274, 370, 487 |
| MboII | GAAGA | 4 cut(s) | 209, 278, 395, 509 |
| MfeI | CAATTG | 1 cut(s) | 165 |
| MluCI | AATT | 3 cut(s) | 109, 165, 649 |
| MlyI | GAGTC | 1 cut(s) | 32 |
| MnlI | CCTC | 7 cut(s) | 125, 215, 241, 332, 358, 469, 598 |
| MseI | TTAA | 5 cut(s) | 108, 303, 390, 420, 648 |
| MspA1I | CMGCKG | 2 cut(s) | 211, 328 |
| MunI | CAATTG | 1 cut(s) | 165 |
| NdeII | GATC | 6 cut(s) | 118, 205, 253, 274, 370, 487 |
| NlaIII | CATG | 3 cut(s) | 50, 125, 595 |
| NmuCI | GTSAC | 2 cut(s) | 28, 562 |
| NspI | RCATGY | 1 cut(s) | 50 |
| NspV | TTCGAA | 1 cut(s) | 36 |
| PaeI | GCATGC | 1 cut(s) | 50 |
| PaqCI | CACCTGC | 1 cut(s) | 70 |
| PfeI | GAWTC | 1 cut(s) | 599 |
| PkrI | GCNGC | 2 cut(s) | 190, 574 |
| PleI | GAGTC | 1 cut(s) | 31 |
| PpsI | GAGTC | 1 cut(s) | 31 |
| PvuII | CAGCTG | 2 cut(s) | 211, 328 |
| RsaI | GTAC | 1 cut(s) | 146 |
| RsaNI | GTAC | 1 cut(s) | 145 |
| SaqAI | TTAA | 5 cut(s) | 108, 303, 390, 420, 648 |
| SatI | GCNGC | 2 cut(s) | 189, 573 |
| Sau3AI | GATC | 6 cut(s) | 118, 205, 253, 274, 370, 487 |
| SchI | GAGTC | 1 cut(s) | 32 |
| SfaNI | GCATC | 1 cut(s) | 523 |
| SfuI | TTCGAA | 1 cut(s) | 36 |
| SphI | GCATGC | 1 cut(s) | 50 |
| Sse9I | AATT | 3 cut(s) | 109, 165, 649 |
| SsiI | CCGC | 1 cut(s) | 85 |
| SspMI | CTAG | 1 cut(s) | 446 |
| TaaI | ACNGT | 1 cut(s) | 507 |
| TaiI | ACGT | 1 cut(s) | 150 |
| TaqI | TCGA | 3 cut(s) | 36, 258, 375 |
| TasI | AATT | 3 cut(s) | 109, 165, 649 |
| TfiI | GAWTC | 1 cut(s) | 599 |
| Tru1I | TTAA | 5 cut(s) | 108, 303, 390, 420, 648 |
| Tru9I | TTAA | 5 cut(s) | 108, 303, 390, 420, 648 |
| TscAI | CASTG | 2 cut(s) | 121, 649 |
| TseFI | GTSAC | 2 cut(s) | 28, 562 |
| TseI | GCWGC | 2 cut(s) | 188, 572 |
| Tsp45I | GTSAC | 2 cut(s) | 28, 562 |
| TspDTI | ATGAA | 3 cut(s) | 279, 396, 513 |
| TspGWI | ACGGA | 1 cut(s) | 89 |
| TspRI | CASTG | 2 cut(s) | 121, 649 |
| XceI | RCATGY | 1 cut(s) | 50 |
| XmiI | GTMKAC | 1 cut(s) | 539 |
| XspI | CTAG | 1 cut(s) | 446 |