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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g03071 |
| rosa_chinensis | RchiOBHm_Chr6g0247941 |
| rosa_laevigata | RLG00000015171 |
| rosa_multiflora | Rmu_sc0006106.1_g000013 |
| rosa_roxburghii | Rroxscaffold_180G00433170 Rroxscaffold_7G00213570 |
| rosa_rugosa | Rorug05G0529600 |
| rosa_samantha | Rh6AG044400 Rh6BG039200 Rh6BG039300 Rh6CG038000 Rh6DG035000 |
| rosa_wichuraiana | Rw6G003860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 3 cut(s) | 652, 991, 1312 |
| Acc36I | ACCTGC | 4 cut(s) | 652, 991, 997, 1312 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1841 |
| AccIII | TCCGGA | 1 cut(s) | 1948 |
| AciI | CCGC | 1 cut(s) | 667 |
| AclI | AACGTT | 1 cut(s) | 1806 |
| AclWI | GGATC | 5 cut(s) | 795, 1134, 1593, 2025, 2038 |
| AcsI | RAATTY | 3 cut(s) | 1164, 2338, 2377 |
| AcuI | CTGAAG | 7 cut(s) | 903, 1224, 1521, 1668, 1926, 2026, 2292 |
| AfaI | GTAC | 7 cut(s) | 532, 728, 871, 1067, 1192, 1260, 1360 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1841, 2181 |
| AjnI | CCWGG | 2 cut(s) | 2283, 2501 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 56, 88 |
| Alw21I | GWGCWC | 3 cut(s) | 100, 181, 291 |
| Alw26I | GTCTC | 7 cut(s) | 79, 241, 488, 763, 827, 1102, 2642 |
| Alw44I | GTGCAC | 1 cut(s) | 287 |
| AlwI | GGATC | 5 cut(s) | 795, 1134, 1593, 2025, 2038 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 206, 209 |
| Aor13HI | TCCGGA | 1 cut(s) | 1948 |
| ApaLI | GTGCAC | 1 cut(s) | 287 |
| ApoI | RAATTY | 3 cut(s) | 1164, 2338, 2377 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 634, 666, 973, 1005, 1294, 1326 |
| AspLEI | GCGC | 2 cut(s) | 2200, 2300 |
| AspS9I | GGNCC | 1 cut(s) | 1828 |
| AsuHPI | GGTGA | 2 cut(s) | 470, 1987 |
| AsuII | TTCGAA | 1 cut(s) | 1700 |
| AsuNHI | GCTAGC | 1 cut(s) | 2363 |
| AvaII | GGWCC | 1 cut(s) | 1828 |
| BaeGI | GKGCMC | 1 cut(s) | 291 |
| BamHI | GGATCC | 1 cut(s) | 2030 |
| BanII | GRGCYC | 4 cut(s) | 624, 963, 1284, 2617 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 352, 384 |
| BauI | CACGAG | 2 cut(s) | 591, 930 |
| BbsI | GAAGAC | 2 cut(s) | 243, 1937 |
| Bbv12I | GWGCWC | 3 cut(s) | 100, 181, 291 |
| BccI | CCATC | 3 cut(s) | 74, 1715, 2628 |
| BceAI | ACGGC | 1 cut(s) | 312 |
| BciT130I | CCWGG | 2 cut(s) | 2285, 2503 |
| BclI | TGATCA | 4 cut(s) | 19, 700, 1039, 1489 |
| BcoDI | GTCTC | 7 cut(s) | 79, 241, 488, 763, 827, 1102, 2642 |
| BfaI | CTAG | 5 cut(s) | 224, 1544, 1638, 2364, 2692 |
| BfmI | CTRYAG | 4 cut(s) | 198, 540, 811, 2258 |
| BfoI | RGCGCY | 2 cut(s) | 2201, 2301 |
| BfuAI | ACCTGC | 4 cut(s) | 652, 991, 997, 1312 |
| BlpI | GCTNAGC | 1 cut(s) | 2216 |
| Bme1390I | CCNGG | 2 cut(s) | 2285, 2503 |
| Bme18I | GGWCC | 1 cut(s) | 1828 |
| BmgT120I | GGNCC | 1 cut(s) | 1828 |
| BmiI | GGNNCC | 5 cut(s) | 621, 960, 1281, 2032, 2507 |
| BmrFI | CCNGG | 2 cut(s) | 2285, 2503 |
| BmrI | ACTGGG | 1 cut(s) | 1435 |
| BmsI | GCATC | 7 cut(s) | 457, 637, 976, 1297, 1621, 1820, 2273 |
| BmtI | GCTAGC | 1 cut(s) | 2367 |
| BmuI | ACTGGG | 1 cut(s) | 1435 |
| BpiI | GAAGAC | 2 cut(s) | 243, 1937 |
| BpmI | CTGGAG | 5 cut(s) | 623, 815, 962, 1154, 1283 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2216 |
| Bpu14I | TTCGAA | 1 cut(s) | 1700 |
| BpuEI | CTTGAG | 1 cut(s) | 177 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1584, 1725 |
| BsaJI | CCNNGG | 4 cut(s) | 1962, 1971, 2201, 2501 |
| BsaWI | WCCGGW | 1 cut(s) | 1948 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 160, 190, 1854, 1884 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1841, 2181 |
| Bse1I | ACTGG | 8 cut(s) | 606, 798, 945, 1137, 1266, 1430, 1508, 2192 |
| Bse3DI | GCAATG | 4 cut(s) | 765, 1104, 1397, 2324 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1584, 1725 |
| BseAI | TCCGGA | 1 cut(s) | 1948 |
| BseBI | CCWGG | 2 cut(s) | 2285, 2503 |
| BseDI | CCNNGG | 4 cut(s) | 1962, 1971, 2201, 2501 |
| BseGI | GGATG | 2 cut(s) | 22, 1716 |
| BseJI | GATNNNNATC | 2 cut(s) | 1584, 1725 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1841, 2181 |
| BseMI | GCAATG | 4 cut(s) | 765, 1104, 1397, 2324 |
| BseNI | ACTGG | 8 cut(s) | 606, 798, 945, 1137, 1266, 1430, 1508, 2192 |
| BseRI | GAGGAG | 8 cut(s) | 57, 60, 63, 506, 845, 1913, 2508, 2595 |
| BseSI | GKGCMC | 1 cut(s) | 291 |
| BsgI | GTGCAG | 1 cut(s) | 1025 |
| BsiHKAI | GWGCWC | 3 cut(s) | 100, 181, 291 |
| BsiSI | CCGG | 2 cut(s) | 157, 1949 |
| BslFI | GGGAC | 1 cut(s) | 2484 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1841, 2181 |
| BsmAI | GTCTC | 7 cut(s) | 79, 241, 488, 763, 827, 1102, 2642 |
| BsmFI | GGGAC | 1 cut(s) | 2484 |
| BsmI | GAATGC | 2 cut(s) | 2128, 2206 |
| Bsp119I | TTCGAA | 1 cut(s) | 1700 |
| Bsp1286I | GDGCHC | 7 cut(s) | 100, 181, 291, 624, 963, 1284, 2617 |
| Bsp13I | TCCGGA | 1 cut(s) | 1948 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2216 |
| Bsp19I | CCATGG | 1 cut(s) | 2201 |
| BspACI | CCGC | 1 cut(s) | 667 |
| BspEI | TCCGGA | 1 cut(s) | 1948 |
| BspHI | TCATGA | 2 cut(s) | 889, 1210 |
| BspLI | GGNNCC | 5 cut(s) | 621, 960, 1281, 2032, 2507 |
| BspMAI | CTGCAG | 2 cut(s) | 202, 2262 |
| BspMI | ACCTGC | 4 cut(s) | 652, 991, 997, 1312 |
| BspOI | GCTAGC | 1 cut(s) | 2367 |
| BspPI | GGATC | 5 cut(s) | 795, 1134, 1593, 2025, 2038 |
| BspQI | GCTCTTC | 2 cut(s) | 88, 2390 |
| BspT104I | TTCGAA | 1 cut(s) | 1700 |
| BsrDI | GCAATG | 4 cut(s) | 765, 1104, 1397, 2324 |
| BsrI | ACTGG | 8 cut(s) | 606, 798, 945, 1137, 1266, 1430, 1508, 2192 |
| BssECI | CCNNGG | 4 cut(s) | 1962, 1971, 2201, 2501 |
| BssSI | CACGAG | 2 cut(s) | 591, 930 |
| BssT1I | CCWWGG | 3 cut(s) | 1962, 1971, 2201 |
| Bst2BI | CACGAG | 2 cut(s) | 591, 930 |
| Bst2UI | CCWGG | 2 cut(s) | 2285, 2503 |
| Bst4CI | ACNGT | 6 cut(s) | 71, 852, 1173, 1605, 1745, 2411 |
| Bst6I | CTCTTC | 8 cut(s) | 88, 774, 1113, 2182, 2225, 2285, 2390, 2487 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 206, 1003 |
| BstBI | TTCGAA | 1 cut(s) | 1700 |
| BstC8I | GCNNGC | 8 cut(s) | 630, 969, 1290, 2262, 2350, 2361, 2365, 2617 |
| BstDSI | CCRYGG | 1 cut(s) | 2201 |
| BstEII | GGTNACC | 1 cut(s) | 458 |
| BstF5I | GGATG | 2 cut(s) | 22, 1716 |
| BstH2I | RGCGCY | 2 cut(s) | 2201, 2301 |
| BstHHI | GCGC | 2 cut(s) | 2200, 2300 |
| BstMAI | GTCTC | 7 cut(s) | 79, 241, 488, 763, 827, 1102, 2642 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 11, 197, 203, 206, 389, 1003, 2113, 2212 |
| BstNI | CCWGG | 2 cut(s) | 2285, 2503 |
| BstNSI | RCATGY | 5 cut(s) | 632, 971, 1292, 2145, 2585 |
| BstPI | GGTNACC | 1 cut(s) | 458 |
| BstSCI | CCNGG | 2 cut(s) | 2283, 2501 |
| BstSFI | CTRYAG | 4 cut(s) | 198, 540, 811, 2258 |
| BstSLI | GKGCMC | 1 cut(s) | 291 |
| BstV2I | GAAGAC | 2 cut(s) | 243, 1937 |
| BstX2I | RGATCY | 1 cut(s) | 2030 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2627 |
| BstYI | RGATCY | 1 cut(s) | 2030 |
| BtgI | CCRYGG | 1 cut(s) | 2201 |
| BtsCI | GGATG | 2 cut(s) | 22, 1716 |
| BtsI | GCAGTG | 3 cut(s) | 1563, 2102, 2148 |
| BtsIMutI | CAGTG | 5 cut(s) | 879, 1563, 1750, 2102, 2148 |
| BveI | ACCTGC | 4 cut(s) | 652, 991, 997, 1312 |
| Cac8I | GCNNGC | 8 cut(s) | 630, 969, 1290, 2262, 2350, 2361, 2365, 2617 |
| CaiI | CAGNNNCTG | 2 cut(s) | 206, 209 |
| CciI | TCATGA | 2 cut(s) | 889, 1210 |
| CfoI | GCGC | 2 cut(s) | 2200, 2300 |
| Cfr13I | GGNCC | 1 cut(s) | 1828 |
| CseI | GACGC | 1 cut(s) | 1003 |
| Csp6I | GTAC | 7 cut(s) | 531, 727, 870, 1066, 1191, 1259, 1359 |
| CviQI | GTAC | 7 cut(s) | 531, 727, 870, 1066, 1191, 1259, 1359 |
| Eam1104I | CTCTTC | 8 cut(s) | 88, 774, 1113, 2182, 2225, 2285, 2390, 2487 |
| EarI | CTCTTC | 8 cut(s) | 88, 774, 1113, 2182, 2225, 2285, 2390, 2487 |
| Eco130I | CCWWGG | 3 cut(s) | 1962, 1971, 2201 |
| Eco24I | GRGCYC | 4 cut(s) | 624, 963, 1284, 2617 |
| Eco47I | GGWCC | 1 cut(s) | 1828 |
| Eco57I | CTGAAG | 7 cut(s) | 903, 1224, 1521, 1668, 1926, 2026, 2292 |
| Eco91I | GGTNACC | 1 cut(s) | 458 |
| EcoO65I | GGTNACC | 1 cut(s) | 458 |
| EcoRII | CCWGG | 2 cut(s) | 2283, 2501 |
| EcoT14I | CCWWGG | 3 cut(s) | 1962, 1971, 2201 |
| EcoT38I | GRGCYC | 4 cut(s) | 624, 963, 1284, 2617 |
| ErhI | CCWWGG | 3 cut(s) | 1962, 1971, 2201 |
| FaqI | GGGAC | 1 cut(s) | 2484 |
| FauI | CCCGC | 1 cut(s) | 660 |
| FauNDI | CATATG | 2 cut(s) | 2446, 2536 |
| FbaI | TGATCA | 4 cut(s) | 19, 700, 1039, 1489 |
| FokI | GGATG | 2 cut(s) | 9, 1723 |
| FriOI | GRGCYC | 4 cut(s) | 624, 963, 1284, 2617 |
| FspBI | CTAG | 5 cut(s) | 224, 1544, 1638, 2364, 2692 |
| GlaI | GCGC | 2 cut(s) | 2199, 2299 |
| GsuI | CTGGAG | 5 cut(s) | 623, 815, 962, 1154, 1283 |
| HaeII | RGCGCY | 2 cut(s) | 2201, 2301 |
| HapII | CCGG | 2 cut(s) | 157, 1949 |
| HgaI | GACGC | 1 cut(s) | 1003 |
| HhaI | GCGC | 2 cut(s) | 2200, 2300 |
| Hin6I | GCGC | 2 cut(s) | 2198, 2298 |
| HinP1I | GCGC | 2 cut(s) | 2198, 2298 |
| HincII | GTYRAC | 3 cut(s) | 1513, 1918, 2318 |
| HindII | GTYRAC | 3 cut(s) | 1513, 1918, 2318 |
| HindIII | AAGCTT | 1 cut(s) | 546 |
| HpaII | CCGG | 2 cut(s) | 157, 1949 |
| HphI | GGTGA | 2 cut(s) | 470, 1987 |
| Hpy166II | GTNNAC | 8 cut(s) | 56, 289, 740, 1079, 1372, 1513, 1918, 2318 |
| Hpy188I | TCNGA | 9 cut(s) | 235, 331, 427, 763, 1102, 1395, 1765, 2030, 2479 |
| Hpy8I | GTNNAC | 8 cut(s) | 56, 289, 740, 1079, 1372, 1513, 1918, 2318 |
| HpyAV | CCTTC | 9 cut(s) | 711, 778, 1050, 1117, 1343, 1528, 1696, 2050, 2461 |
| HpyCH4III | ACNGT | 6 cut(s) | 71, 852, 1173, 1605, 1745, 2411 |
| HpyCH4IV | ACGT | 4 cut(s) | 729, 1068, 1361, 1806 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 11, 197, 203, 206, 389, 1003, 2113, 2212 |
| HpySE526I | ACGT | 4 cut(s) | 729, 1068, 1361, 1806 |
| HspAI | GCGC | 2 cut(s) | 2198, 2298 |
| Kpn2I | TCCGGA | 1 cut(s) | 1948 |
| Ksp22I | TGATCA | 4 cut(s) | 19, 700, 1039, 1489 |
| LguI | GCTCTTC | 2 cut(s) | 88, 2390 |
| LweI | GCATC | 7 cut(s) | 457, 637, 976, 1297, 1621, 1820, 2273 |
| MaeI | CTAG | 5 cut(s) | 224, 1544, 1638, 2364, 2692 |
| MaeII | ACGT | 4 cut(s) | 729, 1068, 1361, 1806 |
| MaeIII | GTNAC | 7 cut(s) | 458, 610, 949, 1270, 1660, 2144, 2387 |
| MfeI | CAATTG | 6 cut(s) | 747, 1086, 1379, 2117, 2510, 2553 |
| MflI | RGATCY | 1 cut(s) | 2030 |
| MhlI | GDGCHC | 7 cut(s) | 100, 181, 291, 624, 963, 1284, 2617 |
| MlyI | GAGTC | 9 cut(s) | 352, 448, 490, 614, 829, 953, 1274, 2506, 2509 |
| MmeI | TCCRAC | 2 cut(s) | 1200, 1827 |
| MroI | TCCGGA | 1 cut(s) | 1948 |
| MseI | TTAA | 6 cut(s) | 185, 1518, 2024, 2193, 2334, 2597 |
| MslI | CAYNNNNRTG | 4 cut(s) | 306, 516, 2586, 2625 |
| MspA1I | CMGCKG | 2 cut(s) | 206, 1850 |
| MspI | CCGG | 2 cut(s) | 157, 1949 |
| MspR9I | CCNGG | 2 cut(s) | 2285, 2503 |
| MunI | CAATTG | 6 cut(s) | 747, 1086, 1379, 2117, 2510, 2553 |
| Mva1269I | GAATGC | 2 cut(s) | 2128, 2206 |
| MvaI | CCWGG | 2 cut(s) | 2285, 2503 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 11, 197, 203, 206, 389, 1003, 2113, 2212 |
| NcoI | CCATGG | 1 cut(s) | 2201 |
| NdeI | CATATG | 2 cut(s) | 2446, 2536 |
| NheI | GCTAGC | 1 cut(s) | 2363 |
| NlaIV | GGNNCC | 5 cut(s) | 621, 960, 1281, 2032, 2507 |
| NmuCI | GTSAC | 4 cut(s) | 458, 610, 949, 2387 |
| NspI | RCATGY | 5 cut(s) | 632, 971, 1292, 2145, 2585 |
| NspV | TTCGAA | 1 cut(s) | 1700 |
| PaeI | GCATGC | 3 cut(s) | 632, 971, 1292 |
| PagI | TCATGA | 2 cut(s) | 889, 1210 |
| PaqCI | CACCTGC | 3 cut(s) | 652, 991, 1312 |
| PciSI | GCTCTTC | 2 cut(s) | 88, 2390 |
| PctI | GAATGC | 2 cut(s) | 2128, 2206 |
| PfeI | GAWTC | 9 cut(s) | 505, 562, 844, 901, 1222, 1958, 2074, 2306, 2441 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1841 |
| PfoI | TCCNGGA | 1 cut(s) | 2283 |
| PleI | GAGTC | 9 cut(s) | 351, 447, 490, 613, 829, 952, 1273, 2505, 2509 |
| PpsI | GAGTC | 9 cut(s) | 351, 447, 490, 613, 829, 952, 1273, 2505, 2509 |
| Psp1406I | AACGTT | 1 cut(s) | 1806 |
| Psp6I | CCWGG | 2 cut(s) | 2283, 2501 |
| PspEI | GGTNACC | 1 cut(s) | 458 |
| PspGI | CCWGG | 2 cut(s) | 2283, 2501 |
| PspN4I | GGNNCC | 5 cut(s) | 621, 960, 1281, 2032, 2507 |
| PspPI | GGNCC | 1 cut(s) | 1828 |
| PstI | CTGCAG | 2 cut(s) | 202, 2262 |
| PstNI | CAGNNNCTG | 2 cut(s) | 206, 209 |
| PsuI | RGATCY | 1 cut(s) | 2030 |
| PvuII | CAGCTG | 2 cut(s) | 206, 1850 |
| RsaI | GTAC | 7 cut(s) | 532, 728, 871, 1067, 1192, 1260, 1360 |
| RsaNI | GTAC | 7 cut(s) | 531, 727, 870, 1066, 1191, 1259, 1359 |
| RseI | CAYNNNNRTG | 4 cut(s) | 306, 516, 2586, 2625 |
| SapI | GCTCTTC | 2 cut(s) | 88, 2390 |
| SaqAI | TTAA | 6 cut(s) | 185, 1518, 2024, 2193, 2334, 2597 |
| Sau96I | GGNCC | 1 cut(s) | 1828 |
| SchI | GAGTC | 9 cut(s) | 352, 448, 490, 614, 829, 953, 1274, 2506, 2509 |
| ScrFI | CCNGG | 2 cut(s) | 2285, 2503 |
| SduI | GDGCHC | 7 cut(s) | 100, 181, 291, 624, 963, 1284, 2617 |
| SfaNI | GCATC | 7 cut(s) | 457, 637, 976, 1297, 1621, 1820, 2273 |
| SfcI | CTRYAG | 4 cut(s) | 198, 540, 811, 2258 |
| SfuI | TTCGAA | 1 cut(s) | 1700 |
| SinI | GGWCC | 1 cut(s) | 1828 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 306, 516, 2586, 2625 |
| SmlI | CTYRAG | 1 cut(s) | 192 |
| SmoI | CTYRAG | 1 cut(s) | 192 |
| SphI | GCATGC | 3 cut(s) | 632, 971, 1292 |
| SsiI | CCGC | 1 cut(s) | 667 |
| SspMI | CTAG | 5 cut(s) | 224, 1544, 1638, 2364, 2692 |
| StyD4I | CCNGG | 2 cut(s) | 2283, 2501 |
| StyI | CCWWGG | 3 cut(s) | 1962, 1971, 2201 |
| TaaI | ACNGT | 6 cut(s) | 71, 852, 1173, 1605, 1745, 2411 |
| TaiI | ACGT | 4 cut(s) | 732, 1071, 1364, 1809 |
| TaqI | TCGA | 6 cut(s) | 8, 130, 525, 1185, 1700, 2571 |
| TatI | WGTACW | 1 cut(s) | 1258 |
| TfiI | GAWTC | 9 cut(s) | 505, 562, 844, 901, 1222, 1958, 2074, 2306, 2441 |
| Tru1I | TTAA | 6 cut(s) | 185, 1518, 2024, 2193, 2334, 2597 |
| Tru9I | TTAA | 6 cut(s) | 185, 1518, 2024, 2193, 2334, 2597 |
| TscAI | CASTG | 5 cut(s) | 886, 1563, 1750, 2109, 2155 |
| TseFI | GTSAC | 4 cut(s) | 458, 610, 949, 2387 |
| Tsp45I | GTSAC | 4 cut(s) | 458, 610, 949, 2387 |
| TspGWI | ACGGA | 4 cut(s) | 598, 937, 1258, 2318 |
| TspRI | CASTG | 5 cut(s) | 886, 1563, 1750, 2109, 2155 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1841 |
| VneI | GTGCAC | 1 cut(s) | 287 |
| VpaK11BI | GGWCC | 1 cut(s) | 1828 |
| XapI | RAATTY | 3 cut(s) | 1164, 2338, 2377 |
| XceI | RCATGY | 5 cut(s) | 632, 971, 1292, 2145, 2585 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1838 |
| XspI | CTAG | 5 cut(s) | 224, 1544, 1638, 2364, 2692 |