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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g03071 |
| rosa_chinensis | RchiOBHm_Chr6g0247941 |
| rosa_laevigata | RLG00000015171 |
| rosa_multiflora | Rmu_sc0006106.1_g000013 |
| rosa_roxburghii | Rroxscaffold_180G00433170 Rroxscaffold_7G00213570 |
| rosa_rugosa | Rorug05G0529600 |
| rosa_samantha | Rh6AG044400 Rh6BG039200 Rh6BG039300 Rh6CG038000 Rh6DG035000 |
| rosa_wichuraiana | Rw6G003860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 658, 997 |
| Acc36I | ACCTGC | 3 cut(s) | 658, 997, 1003 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1775 |
| AccIII | TCCGGA | 1 cut(s) | 1882 |
| AciI | CCGC | 1 cut(s) | 673 |
| AclI | AACGTT | 1 cut(s) | 1740 |
| AclWI | GGATC | 5 cut(s) | 801, 1140, 1527, 1959, 1972 |
| AcsI | RAATTY | 5 cut(s) | 1170, 2272, 2311, 2656, 2681 |
| AcuI | CTGAAG | 7 cut(s) | 909, 1230, 1455, 1602, 1860, 1960, 2226 |
| AfaI | GTAC | 6 cut(s) | 538, 734, 877, 1073, 1198, 1266 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1775, 2115 |
| AjnI | CCWGG | 2 cut(s) | 2217, 2435 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 62, 94 |
| Alw21I | GWGCWC | 3 cut(s) | 106, 187, 297 |
| Alw26I | GTCTC | 7 cut(s) | 85, 247, 494, 769, 833, 1108, 2576 |
| Alw44I | GTGCAC | 1 cut(s) | 293 |
| AlwI | GGATC | 5 cut(s) | 801, 1140, 1527, 1959, 1972 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 212, 215 |
| Aor13HI | TCCGGA | 1 cut(s) | 1882 |
| ApaLI | GTGCAC | 1 cut(s) | 293 |
| ApoI | RAATTY | 5 cut(s) | 1170, 2272, 2311, 2656, 2681 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 640, 672, 979, 1011, 1300, 1332 |
| AspLEI | GCGC | 2 cut(s) | 2134, 2234 |
| AspS9I | GGNCC | 1 cut(s) | 1762 |
| AsuHPI | GGTGA | 2 cut(s) | 476, 1921 |
| AsuII | TTCGAA | 1 cut(s) | 1634 |
| AsuNHI | GCTAGC | 1 cut(s) | 2297 |
| AvaII | GGWCC | 1 cut(s) | 1762 |
| BaeGI | GKGCMC | 1 cut(s) | 297 |
| BamHI | GGATCC | 1 cut(s) | 1964 |
| BanII | GRGCYC | 4 cut(s) | 630, 969, 1290, 2551 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 358, 390 |
| BauI | CACGAG | 2 cut(s) | 597, 936 |
| BbsI | GAAGAC | 2 cut(s) | 249, 1871 |
| Bbv12I | GWGCWC | 3 cut(s) | 106, 187, 297 |
| BccI | CCATC | 4 cut(s) | 80, 1649, 2562, 2652 |
| BceAI | ACGGC | 1 cut(s) | 318 |
| BciT130I | CCWGG | 2 cut(s) | 2219, 2437 |
| BclI | TGATCA | 4 cut(s) | 19, 706, 1045, 1423 |
| BcoDI | GTCTC | 7 cut(s) | 85, 247, 494, 769, 833, 1108, 2576 |
| BfaI | CTAG | 4 cut(s) | 230, 1478, 1572, 2298 |
| BfmI | CTRYAG | 4 cut(s) | 204, 546, 817, 2192 |
| BfoI | RGCGCY | 2 cut(s) | 2135, 2235 |
| BfuAI | ACCTGC | 3 cut(s) | 658, 997, 1003 |
| BlpI | GCTNAGC | 1 cut(s) | 2150 |
| Bme1390I | CCNGG | 2 cut(s) | 2219, 2437 |
| Bme18I | GGWCC | 1 cut(s) | 1762 |
| BmgT120I | GGNCC | 1 cut(s) | 1762 |
| BmiI | GGNNCC | 5 cut(s) | 627, 966, 1287, 1966, 2441 |
| BmrFI | CCNGG | 2 cut(s) | 2219, 2437 |
| BmrI | ACTGGG | 1 cut(s) | 1369 |
| BmsI | GCATC | 7 cut(s) | 463, 643, 982, 1303, 1555, 1754, 2207 |
| BmtI | GCTAGC | 1 cut(s) | 2301 |
| BmuI | ACTGGG | 1 cut(s) | 1369 |
| BpiI | GAAGAC | 2 cut(s) | 249, 1871 |
| BpmI | CTGGAG | 5 cut(s) | 629, 821, 968, 1160, 1289 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2150 |
| Bpu14I | TTCGAA | 1 cut(s) | 1634 |
| BpuEI | CTTGAG | 1 cut(s) | 183 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1518, 1659, 2673 |
| BsaJI | CCNNGG | 4 cut(s) | 1896, 1905, 2135, 2435 |
| BsaWI | WCCGGW | 1 cut(s) | 1882 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 166, 196, 1788, 1818 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1775, 2115 |
| Bse1I | ACTGG | 8 cut(s) | 612, 804, 951, 1143, 1272, 1364, 1442, 2126 |
| Bse3DI | GCAATG | 4 cut(s) | 771, 1110, 1331, 2258 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1518, 1659, 2673 |
| BseAI | TCCGGA | 1 cut(s) | 1882 |
| BseBI | CCWGG | 2 cut(s) | 2219, 2437 |
| BseDI | CCNNGG | 4 cut(s) | 1896, 1905, 2135, 2435 |
| BseGI | GGATG | 2 cut(s) | 22, 1650 |
| BseJI | GATNNNNATC | 3 cut(s) | 1518, 1659, 2673 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1775, 2115 |
| BseMI | GCAATG | 4 cut(s) | 771, 1110, 1331, 2258 |
| BseMII | CTCAG | 8 cut(s) | 200, 348, 720, 780, 1059, 1119, 2141, 2424 |
| BseNI | ACTGG | 8 cut(s) | 612, 804, 951, 1143, 1272, 1364, 1442, 2126 |
| BseRI | GAGGAG | 7 cut(s) | 66, 69, 512, 851, 1847, 2442, 2529 |
| BseSI | GKGCMC | 1 cut(s) | 297 |
| BsgI | GTGCAG | 1 cut(s) | 1031 |
| BsiHKAI | GWGCWC | 3 cut(s) | 106, 187, 297 |
| BsiSI | CCGG | 2 cut(s) | 163, 1883 |
| BslFI | GGGAC | 1 cut(s) | 2418 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1775, 2115 |
| BsmAI | GTCTC | 7 cut(s) | 85, 247, 494, 769, 833, 1108, 2576 |
| BsmFI | GGGAC | 1 cut(s) | 2418 |
| BsmI | GAATGC | 2 cut(s) | 2062, 2140 |
| Bsp119I | TTCGAA | 1 cut(s) | 1634 |
| Bsp1286I | GDGCHC | 7 cut(s) | 106, 187, 297, 630, 969, 1290, 2551 |
| Bsp13I | TCCGGA | 1 cut(s) | 1882 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2150 |
| Bsp19I | CCATGG | 1 cut(s) | 2135 |
| BspACI | CCGC | 1 cut(s) | 673 |
| BspCNI | CTCAG | 8 cut(s) | 199, 347, 721, 779, 1060, 1118, 2142, 2423 |
| BspEI | TCCGGA | 1 cut(s) | 1882 |
| BspHI | TCATGA | 2 cut(s) | 895, 1216 |
| BspLI | GGNNCC | 5 cut(s) | 627, 966, 1287, 1966, 2441 |
| BspMAI | CTGCAG | 2 cut(s) | 208, 2196 |
| BspMI | ACCTGC | 3 cut(s) | 658, 997, 1003 |
| BspOI | GCTAGC | 1 cut(s) | 2301 |
| BspPI | GGATC | 5 cut(s) | 801, 1140, 1527, 1959, 1972 |
| BspQI | GCTCTTC | 3 cut(s) | 94, 2324, 2686 |
| BspT104I | TTCGAA | 1 cut(s) | 1634 |
| BsrDI | GCAATG | 4 cut(s) | 771, 1110, 1331, 2258 |
| BsrI | ACTGG | 8 cut(s) | 612, 804, 951, 1143, 1272, 1364, 1442, 2126 |
| BssECI | CCNNGG | 4 cut(s) | 1896, 1905, 2135, 2435 |
| BssSI | CACGAG | 2 cut(s) | 597, 936 |
| BssT1I | CCWWGG | 3 cut(s) | 1896, 1905, 2135 |
| Bst2BI | CACGAG | 2 cut(s) | 597, 936 |
| Bst2UI | CCWGG | 2 cut(s) | 2219, 2437 |
| Bst4CI | ACNGT | 6 cut(s) | 77, 858, 1179, 1539, 1679, 2345 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 212, 1009, 1333 |
| BstBI | TTCGAA | 1 cut(s) | 1634 |
| BstC8I | GCNNGC | 8 cut(s) | 636, 975, 1296, 2196, 2284, 2295, 2299, 2551 |
| BstDSI | CCRYGG | 1 cut(s) | 2135 |
| BstEII | GGTNACC | 1 cut(s) | 464 |
| BstF5I | GGATG | 2 cut(s) | 22, 1650 |
| BstH2I | RGCGCY | 2 cut(s) | 2135, 2235 |
| BstHHI | GCGC | 2 cut(s) | 2134, 2234 |
| BstMAI | GTCTC | 7 cut(s) | 85, 247, 494, 769, 833, 1108, 2576 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 11, 203, 209, 212, 395, 1009, 1333, 2047, 2146 |
| BstNI | CCWGG | 2 cut(s) | 2219, 2437 |
| BstNSI | RCATGY | 5 cut(s) | 638, 977, 1298, 2079, 2519 |
| BstPI | GGTNACC | 1 cut(s) | 464 |
| BstSCI | CCNGG | 2 cut(s) | 2217, 2435 |
| BstSFI | CTRYAG | 4 cut(s) | 204, 546, 817, 2192 |
| BstSLI | GKGCMC | 1 cut(s) | 297 |
| BstV2I | GAAGAC | 2 cut(s) | 249, 1871 |
| BstX2I | RGATCY | 1 cut(s) | 1964 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2561, 2651 |
| BstYI | RGATCY | 1 cut(s) | 1964 |
| BtgI | CCRYGG | 1 cut(s) | 2135 |
| BtsCI | GGATG | 2 cut(s) | 22, 1650 |
| BtsI | GCAGTG | 3 cut(s) | 1497, 2036, 2082 |
| BtsIMutI | CAGTG | 5 cut(s) | 885, 1497, 1684, 2036, 2082 |
| BveI | ACCTGC | 3 cut(s) | 658, 997, 1003 |
| Cac8I | GCNNGC | 8 cut(s) | 636, 975, 1296, 2196, 2284, 2295, 2299, 2551 |
| CaiI | CAGNNNCTG | 2 cut(s) | 212, 215 |
| CciI | TCATGA | 2 cut(s) | 895, 1216 |
| CfoI | GCGC | 2 cut(s) | 2134, 2234 |
| Cfr13I | GGNCC | 1 cut(s) | 1762 |
| CseI | GACGC | 1 cut(s) | 1009 |
| Csp6I | GTAC | 6 cut(s) | 537, 733, 876, 1072, 1197, 1265 |
| CviQI | GTAC | 6 cut(s) | 537, 733, 876, 1072, 1197, 1265 |
| Eco130I | CCWWGG | 3 cut(s) | 1896, 1905, 2135 |
| Eco24I | GRGCYC | 4 cut(s) | 630, 969, 1290, 2551 |
| Eco47I | GGWCC | 1 cut(s) | 1762 |
| Eco57I | CTGAAG | 7 cut(s) | 909, 1230, 1455, 1602, 1860, 1960, 2226 |
| Eco91I | GGTNACC | 1 cut(s) | 464 |
| EcoO65I | GGTNACC | 1 cut(s) | 464 |
| EcoRII | CCWGG | 2 cut(s) | 2217, 2435 |
| EcoT14I | CCWWGG | 3 cut(s) | 1896, 1905, 2135 |
| EcoT38I | GRGCYC | 4 cut(s) | 630, 969, 1290, 2551 |
| ErhI | CCWWGG | 3 cut(s) | 1896, 1905, 2135 |
| FaqI | GGGAC | 1 cut(s) | 2418 |
| FauI | CCCGC | 1 cut(s) | 666 |
| FauNDI | CATATG | 2 cut(s) | 2380, 2470 |
| FbaI | TGATCA | 4 cut(s) | 19, 706, 1045, 1423 |
| FokI | GGATG | 2 cut(s) | 9, 1657 |
| FriOI | GRGCYC | 4 cut(s) | 630, 969, 1290, 2551 |
| FspBI | CTAG | 4 cut(s) | 230, 1478, 1572, 2298 |
| GlaI | GCGC | 2 cut(s) | 2133, 2233 |
| GsuI | CTGGAG | 5 cut(s) | 629, 821, 968, 1160, 1289 |
| HaeII | RGCGCY | 2 cut(s) | 2135, 2235 |
| HapII | CCGG | 2 cut(s) | 163, 1883 |
| HgaI | GACGC | 1 cut(s) | 1009 |
| HhaI | GCGC | 2 cut(s) | 2134, 2234 |
| Hin6I | GCGC | 2 cut(s) | 2132, 2232 |
| HinP1I | GCGC | 2 cut(s) | 2132, 2232 |
| HincII | GTYRAC | 4 cut(s) | 1447, 1852, 2252, 2636 |
| HindII | GTYRAC | 4 cut(s) | 1447, 1852, 2252, 2636 |
| HindIII | AAGCTT | 1 cut(s) | 552 |
| HpaII | CCGG | 2 cut(s) | 163, 1883 |
| HphI | GGTGA | 2 cut(s) | 476, 1921 |
| Hpy166II | GTNNAC | 8 cut(s) | 62, 295, 746, 1085, 1447, 1852, 2252, 2636 |
| Hpy188I | TCNGA | 8 cut(s) | 241, 337, 433, 769, 1108, 1699, 1964, 2413 |
| Hpy8I | GTNNAC | 8 cut(s) | 62, 295, 746, 1085, 1447, 1852, 2252, 2636 |
| HpyAV | CCTTC | 8 cut(s) | 717, 784, 1056, 1123, 1462, 1630, 1984, 2395 |
| HpyCH4III | ACNGT | 6 cut(s) | 77, 858, 1179, 1539, 1679, 2345 |
| HpyCH4IV | ACGT | 3 cut(s) | 735, 1074, 1740 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 11, 203, 209, 212, 395, 1009, 1333, 2047, 2146 |
| HpySE526I | ACGT | 3 cut(s) | 735, 1074, 1740 |
| HspAI | GCGC | 2 cut(s) | 2132, 2232 |
| Kpn2I | TCCGGA | 1 cut(s) | 1882 |
| Ksp22I | TGATCA | 4 cut(s) | 19, 706, 1045, 1423 |
| LguI | GCTCTTC | 3 cut(s) | 94, 2324, 2686 |
| LweI | GCATC | 7 cut(s) | 463, 643, 982, 1303, 1555, 1754, 2207 |
| MaeI | CTAG | 4 cut(s) | 230, 1478, 1572, 2298 |
| MaeII | ACGT | 3 cut(s) | 735, 1074, 1740 |
| MaeIII | GTNAC | 8 cut(s) | 464, 616, 955, 1276, 1594, 2078, 2321, 2626 |
| MfeI | CAATTG | 5 cut(s) | 753, 1092, 2051, 2444, 2487 |
| MflI | RGATCY | 1 cut(s) | 1964 |
| MhlI | GDGCHC | 7 cut(s) | 106, 187, 297, 630, 969, 1290, 2551 |
| MlyI | GAGTC | 9 cut(s) | 358, 454, 496, 620, 835, 959, 1280, 2440, 2443 |
| MmeI | TCCRAC | 2 cut(s) | 1206, 1761 |
| MroI | TCCGGA | 1 cut(s) | 1882 |
| MseI | TTAA | 6 cut(s) | 191, 1452, 1958, 2127, 2268, 2531 |
| MslI | CAYNNNNRTG | 5 cut(s) | 312, 522, 2520, 2559, 2649 |
| MspA1I | CMGCKG | 2 cut(s) | 212, 1784 |
| MspI | CCGG | 2 cut(s) | 163, 1883 |
| MspR9I | CCNGG | 2 cut(s) | 2219, 2437 |
| MunI | CAATTG | 5 cut(s) | 753, 1092, 2051, 2444, 2487 |
| Mva1269I | GAATGC | 2 cut(s) | 2062, 2140 |
| MvaI | CCWGG | 2 cut(s) | 2219, 2437 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 11, 203, 209, 212, 395, 1009, 1333, 2047, 2146 |
| NcoI | CCATGG | 1 cut(s) | 2135 |
| NdeI | CATATG | 2 cut(s) | 2380, 2470 |
| NheI | GCTAGC | 1 cut(s) | 2297 |
| NlaIV | GGNNCC | 5 cut(s) | 627, 966, 1287, 1966, 2441 |
| NmuCI | GTSAC | 4 cut(s) | 464, 616, 955, 2321 |
| NspI | RCATGY | 5 cut(s) | 638, 977, 1298, 2079, 2519 |
| NspV | TTCGAA | 1 cut(s) | 1634 |
| PaeI | GCATGC | 3 cut(s) | 638, 977, 1298 |
| PagI | TCATGA | 2 cut(s) | 895, 1216 |
| PaqCI | CACCTGC | 2 cut(s) | 658, 997 |
| PciSI | GCTCTTC | 3 cut(s) | 94, 2324, 2686 |
| PctI | GAATGC | 2 cut(s) | 2062, 2140 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1775 |
| PfoI | TCCNGGA | 1 cut(s) | 2217 |
| PleI | GAGTC | 9 cut(s) | 357, 453, 496, 619, 835, 958, 1279, 2439, 2443 |
| PpsI | GAGTC | 9 cut(s) | 357, 453, 496, 619, 835, 958, 1279, 2439, 2443 |
| Psp1406I | AACGTT | 1 cut(s) | 1740 |
| Psp6I | CCWGG | 2 cut(s) | 2217, 2435 |
| PspEI | GGTNACC | 1 cut(s) | 464 |
| PspGI | CCWGG | 2 cut(s) | 2217, 2435 |
| PspN4I | GGNNCC | 5 cut(s) | 627, 966, 1287, 1966, 2441 |
| PspPI | GGNCC | 1 cut(s) | 1762 |
| PstI | CTGCAG | 2 cut(s) | 208, 2196 |
| PstNI | CAGNNNCTG | 2 cut(s) | 212, 215 |
| PsuI | RGATCY | 1 cut(s) | 1964 |
| PvuII | CAGCTG | 2 cut(s) | 212, 1784 |
| RsaI | GTAC | 6 cut(s) | 538, 734, 877, 1073, 1198, 1266 |
| RsaNI | GTAC | 6 cut(s) | 537, 733, 876, 1072, 1197, 1265 |
| RseI | CAYNNNNRTG | 5 cut(s) | 312, 522, 2520, 2559, 2649 |
| SapI | GCTCTTC | 3 cut(s) | 94, 2324, 2686 |
| SaqAI | TTAA | 6 cut(s) | 191, 1452, 1958, 2127, 2268, 2531 |
| Sau96I | GGNCC | 1 cut(s) | 1762 |
| SchI | GAGTC | 9 cut(s) | 358, 454, 496, 620, 835, 959, 1280, 2440, 2443 |
| ScrFI | CCNGG | 2 cut(s) | 2219, 2437 |
| SduI | GDGCHC | 7 cut(s) | 106, 187, 297, 630, 969, 1290, 2551 |
| SfaNI | GCATC | 7 cut(s) | 463, 643, 982, 1303, 1555, 1754, 2207 |
| SfcI | CTRYAG | 4 cut(s) | 204, 546, 817, 2192 |
| SfuI | TTCGAA | 1 cut(s) | 1634 |
| SinI | GGWCC | 1 cut(s) | 1762 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 312, 522, 2520, 2559, 2649 |
| SmlI | CTYRAG | 1 cut(s) | 198 |
| SmoI | CTYRAG | 1 cut(s) | 198 |
| SphI | GCATGC | 3 cut(s) | 638, 977, 1298 |
| SsiI | CCGC | 1 cut(s) | 673 |
| SspMI | CTAG | 4 cut(s) | 230, 1478, 1572, 2298 |
| StyD4I | CCNGG | 2 cut(s) | 2217, 2435 |
| StyI | CCWWGG | 3 cut(s) | 1896, 1905, 2135 |
| TaaI | ACNGT | 6 cut(s) | 77, 858, 1179, 1539, 1679, 2345 |
| TaiI | ACGT | 3 cut(s) | 738, 1077, 1743 |
| TaqI | TCGA | 6 cut(s) | 8, 136, 531, 1191, 1634, 2505 |
| TatI | WGTACW | 1 cut(s) | 1264 |
| Tru1I | TTAA | 6 cut(s) | 191, 1452, 1958, 2127, 2268, 2531 |
| Tru9I | TTAA | 6 cut(s) | 191, 1452, 1958, 2127, 2268, 2531 |
| TscAI | CASTG | 5 cut(s) | 892, 1497, 1684, 2043, 2089 |
| TseFI | GTSAC | 4 cut(s) | 464, 616, 955, 2321 |
| Tsp45I | GTSAC | 4 cut(s) | 464, 616, 955, 2321 |
| TspGWI | ACGGA | 4 cut(s) | 604, 943, 1264, 2252 |
| TspRI | CASTG | 5 cut(s) | 892, 1497, 1684, 2043, 2089 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1775 |
| VneI | GTGCAC | 1 cut(s) | 293 |
| VpaK11BI | GGWCC | 1 cut(s) | 1762 |
| XapI | RAATTY | 5 cut(s) | 1170, 2272, 2311, 2656, 2681 |
| XceI | RCATGY | 5 cut(s) | 638, 977, 1298, 2079, 2519 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1772 |
| XspI | CTAG | 4 cut(s) | 230, 1478, 1572, 2298 |