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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g03071 |
| rosa_chinensis | RchiOBHm_Chr6g0247941 |
| rosa_laevigata | RLG00000015171 |
| rosa_multiflora | Rmu_sc0006106.1_g000013 |
| rosa_roxburghii | Rroxscaffold_180G00433170 Rroxscaffold_7G00213570 |
| rosa_rugosa | Rorug05G0529600 |
| rosa_samantha | Rh6AG044400 Rh6BG039200 Rh6BG039300 Rh6CG038000 Rh6DG035000 |
| rosa_wichuraiana | Rw6G003860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 598, 934 |
| Acc36I | ACCTGC | 2 cut(s) | 598, 934 |
| AccB1I | GGYRCC | 1 cut(s) | 1319 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1490 |
| AccI | GTMKAC | 1 cut(s) | 2346 |
| AccII | CGCG | 1 cut(s) | 55 |
| AciI | CCGC | 1 cut(s) | 949 |
| AclWI | GGATC | 5 cut(s) | 407, 738, 1242, 1677, 1690 |
| AcsI | RAATTY | 3 cut(s) | 1586, 1990, 2029 |
| AcuI | CTGAAG | 7 cut(s) | 510, 846, 1170, 1317, 1575, 1678, 1944 |
| AfaI | GTAC | 4 cut(s) | 478, 671, 814, 1010 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1329, 1490, 1833 |
| AjnI | CCWGG | 3 cut(s) | 33, 1935, 2153 |
| Alw21I | GWGCWC | 1 cut(s) | 127 |
| Alw26I | GTCTC | 5 cut(s) | 434, 706, 770, 1045, 2294 |
| AlwI | GGATC | 5 cut(s) | 407, 738, 1242, 1677, 1690 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 152, 155, 1597, 1607 |
| ApoI | RAATTY | 3 cut(s) | 1586, 1990, 2029 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 580, 612, 916, 948, 1975, 2007 |
| AspLEI | GCGC | 2 cut(s) | 57, 1852 |
| AspS9I | GGNCC | 2 cut(s) | 663, 1477 |
| AsuHPI | GGTGA | 4 cut(s) | 416, 1372, 1639, 2261 |
| AsuII | TTCGAA | 1 cut(s) | 1349 |
| AsuNHI | GCTAGC | 1 cut(s) | 2015 |
| AvaII | GGWCC | 2 cut(s) | 663, 1477 |
| BamHI | GGATCC | 1 cut(s) | 1682 |
| BanI | GGYRCC | 1 cut(s) | 1319 |
| BanII | GRGCYC | 3 cut(s) | 570, 906, 2269 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 298, 330 |
| BauI | CACGAG | 2 cut(s) | 537, 873 |
| BbsI | GAAGAC | 2 cut(s) | 189, 381 |
| Bbv12I | GWGCWC | 1 cut(s) | 127 |
| BccI | CCATC | 2 cut(s) | 1364, 2280 |
| BceAI | ACGGC | 1 cut(s) | 258 |
| BciT130I | CCWGG | 3 cut(s) | 35, 1937, 2155 |
| BclI | TGATCA | 4 cut(s) | 76, 643, 982, 1138 |
| BcoDI | GTCTC | 5 cut(s) | 434, 706, 770, 1045, 2294 |
| BfaI | CTAG | 5 cut(s) | 170, 1193, 1287, 2016, 2340 |
| BfmI | CTRYAG | 2 cut(s) | 144, 1910 |
| BfoI | RGCGCY | 1 cut(s) | 1853 |
| BfuAI | ACCTGC | 2 cut(s) | 598, 934 |
| BlpI | GCTNAGC | 1 cut(s) | 1868 |
| Bme1390I | CCNGG | 3 cut(s) | 35, 1937, 2155 |
| Bme18I | GGWCC | 2 cut(s) | 663, 1477 |
| BmgT120I | GGNCC | 2 cut(s) | 663, 1477 |
| BmiI | GGNNCC | 6 cut(s) | 16, 567, 903, 1321, 1684, 2159 |
| BmrFI | CCNGG | 3 cut(s) | 35, 1937, 2155 |
| BmsI | GCATC | 6 cut(s) | 244, 583, 919, 1270, 1469, 1925 |
| BmtI | GCTAGC | 1 cut(s) | 2019 |
| BpiI | GAAGAC | 2 cut(s) | 189, 381 |
| BpmI | CTGGAG | 3 cut(s) | 569, 905, 1097 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1868 |
| Bpu14I | TTCGAA | 1 cut(s) | 1349 |
| BpuEI | CTTGAG | 1 cut(s) | 123 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1233, 1374 |
| BsaJI | CCNNGG | 4 cut(s) | 1614, 1623, 1853, 2153 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 106, 136, 1503, 1533 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1329, 1490, 1833 |
| Bse1I | ACTGG | 6 cut(s) | 552, 741, 888, 1080, 1157, 1844 |
| Bse3DI | GCAATG | 4 cut(s) | 708, 1047, 1455, 1976 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1233, 1374 |
| BseBI | CCWGG | 3 cut(s) | 35, 1937, 2155 |
| BseDI | CCNNGG | 4 cut(s) | 1614, 1623, 1853, 2153 |
| BseJI | GATNNNNATC | 2 cut(s) | 1233, 1374 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1329, 1490, 1833 |
| BseMI | GCAATG | 4 cut(s) | 708, 1047, 1455, 1976 |
| BseMII | CTCAG | 8 cut(s) | 140, 288, 717, 996, 1056, 1859, 2142, 2199 |
| BseNI | ACTGG | 6 cut(s) | 552, 741, 888, 1080, 1157, 1844 |
| BseRI | GAGGAG | 5 cut(s) | 452, 788, 1962, 2160, 2247 |
| Bsh1236I | CGCG | 1 cut(s) | 55 |
| BshNI | GGYRCC | 1 cut(s) | 1319 |
| BsiHKAI | GWGCWC | 1 cut(s) | 127 |
| BslFI | GGGAC | 1 cut(s) | 2136 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1329, 1490, 1833 |
| BsmAI | GTCTC | 5 cut(s) | 434, 706, 770, 1045, 2294 |
| BsmFI | GGGAC | 1 cut(s) | 2136 |
| BsmI | GAATGC | 2 cut(s) | 1780, 1858 |
| Bsp119I | TTCGAA | 1 cut(s) | 1349 |
| Bsp1286I | GDGCHC | 4 cut(s) | 127, 570, 906, 2269 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1868 |
| Bsp19I | CCATGG | 2 cut(s) | 1623, 1853 |
| BspACI | CCGC | 1 cut(s) | 949 |
| BspCNI | CTCAG | 8 cut(s) | 139, 287, 716, 997, 1055, 1860, 2141, 2200 |
| BspFNI | CGCG | 1 cut(s) | 55 |
| BspLI | GGNNCC | 6 cut(s) | 16, 567, 903, 1321, 1684, 2159 |
| BspMAI | CTGCAG | 2 cut(s) | 148, 1914 |
| BspMI | ACCTGC | 2 cut(s) | 598, 934 |
| BspOI | GCTAGC | 1 cut(s) | 2019 |
| BspPI | GGATC | 5 cut(s) | 407, 738, 1242, 1677, 1690 |
| BspQI | GCTCTTC | 1 cut(s) | 2042 |
| BspT104I | TTCGAA | 1 cut(s) | 1349 |
| BspT107I | GGYRCC | 1 cut(s) | 1319 |
| BsrDI | GCAATG | 4 cut(s) | 708, 1047, 1455, 1976 |
| BsrI | ACTGG | 6 cut(s) | 552, 741, 888, 1080, 1157, 1844 |
| BssECI | CCNNGG | 4 cut(s) | 1614, 1623, 1853, 2153 |
| BssSI | CACGAG | 2 cut(s) | 537, 873 |
| BssT1I | CCWWGG | 3 cut(s) | 1614, 1623, 1853 |
| Bst2BI | CACGAG | 2 cut(s) | 537, 873 |
| Bst2UI | CCWGG | 3 cut(s) | 35, 1937, 2155 |
| Bst4CI | ACNGT | 4 cut(s) | 459, 795, 1394, 2063 |
| Bst6I | CTCTTC | 7 cut(s) | 717, 1542, 1834, 1877, 1937, 2042, 2139 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 152 |
| BstBI | TTCGAA | 1 cut(s) | 1349 |
| BstC8I | GCNNGC | 6 cut(s) | 576, 912, 1914, 2002, 2013, 2017 |
| BstDSI | CCRYGG | 2 cut(s) | 1623, 1853 |
| BstEII | GGTNACC | 1 cut(s) | 404 |
| BstFNI | CGCG | 1 cut(s) | 55 |
| BstH2I | RGCGCY | 1 cut(s) | 1853 |
| BstHHI | GCGC | 2 cut(s) | 57, 1852 |
| BstMAI | GTCTC | 5 cut(s) | 434, 706, 770, 1045, 2294 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 143, 149, 152, 335, 1765, 1864 |
| BstNI | CCWGG | 3 cut(s) | 35, 1937, 2155 |
| BstNSI | RCATGY | 4 cut(s) | 578, 914, 1797, 2237 |
| BstPI | GGTNACC | 1 cut(s) | 404 |
| BstSCI | CCNGG | 3 cut(s) | 33, 1935, 2153 |
| BstSFI | CTRYAG | 2 cut(s) | 144, 1910 |
| BstUI | CGCG | 1 cut(s) | 55 |
| BstV2I | GAAGAC | 2 cut(s) | 189, 381 |
| BstX2I | RGATCY | 1 cut(s) | 1682 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2279 |
| BstYI | RGATCY | 1 cut(s) | 1682 |
| BtgI | CCRYGG | 2 cut(s) | 1623, 1853 |
| BtsI | GCAGTG | 5 cut(s) | 646, 985, 1212, 1754, 1800 |
| BtsIMutI | CAGTG | 6 cut(s) | 646, 985, 1212, 1399, 1754, 1800 |
| BveI | ACCTGC | 2 cut(s) | 598, 934 |
| Cac8I | GCNNGC | 6 cut(s) | 576, 912, 1914, 2002, 2013, 2017 |
| CaiI | CAGNNNCTG | 4 cut(s) | 152, 155, 1597, 1607 |
| CfoI | GCGC | 2 cut(s) | 57, 1852 |
| Cfr13I | GGNCC | 2 cut(s) | 663, 1477 |
| Csp6I | GTAC | 4 cut(s) | 477, 670, 813, 1009 |
| CviQI | GTAC | 4 cut(s) | 477, 670, 813, 1009 |
| Eam1104I | CTCTTC | 7 cut(s) | 717, 1542, 1834, 1877, 1937, 2042, 2139 |
| EarI | CTCTTC | 7 cut(s) | 717, 1542, 1834, 1877, 1937, 2042, 2139 |
| Eco130I | CCWWGG | 3 cut(s) | 1614, 1623, 1853 |
| Eco24I | GRGCYC | 3 cut(s) | 570, 906, 2269 |
| Eco32I | GATATC | 1 cut(s) | 1284 |
| Eco47I | GGWCC | 2 cut(s) | 663, 1477 |
| Eco57I | CTGAAG | 7 cut(s) | 510, 846, 1170, 1317, 1575, 1678, 1944 |
| Eco91I | GGTNACC | 1 cut(s) | 404 |
| EcoO65I | GGTNACC | 1 cut(s) | 404 |
| EcoRII | CCWGG | 3 cut(s) | 33, 1935, 2153 |
| EcoRV | GATATC | 1 cut(s) | 1284 |
| EcoT14I | CCWWGG | 3 cut(s) | 1614, 1623, 1853 |
| EcoT38I | GRGCYC | 3 cut(s) | 570, 906, 2269 |
| ErhI | CCWWGG | 3 cut(s) | 1614, 1623, 1853 |
| FaqI | GGGAC | 1 cut(s) | 2136 |
| FauI | CCCGC | 1 cut(s) | 942 |
| FauNDI | CATATG | 2 cut(s) | 2098, 2188 |
| FbaI | TGATCA | 4 cut(s) | 76, 643, 982, 1138 |
| FblI | GTMKAC | 1 cut(s) | 2346 |
| FriOI | GRGCYC | 3 cut(s) | 570, 906, 2269 |
| FspBI | CTAG | 5 cut(s) | 170, 1193, 1287, 2016, 2340 |
| GlaI | GCGC | 2 cut(s) | 56, 1851 |
| GsuI | CTGGAG | 3 cut(s) | 569, 905, 1097 |
| HaeII | RGCGCY | 1 cut(s) | 1853 |
| HhaI | GCGC | 2 cut(s) | 57, 1852 |
| Hin6I | GCGC | 2 cut(s) | 55, 1850 |
| HinP1I | GCGC | 2 cut(s) | 55, 1850 |
| HincII | GTYRAC | 3 cut(s) | 1162, 1567, 1970 |
| HindII | GTYRAC | 3 cut(s) | 1162, 1567, 1970 |
| HindIII | AAGCTT | 2 cut(s) | 492, 828 |
| HphI | GGTGA | 4 cut(s) | 416, 1372, 1639, 2261 |
| Hpy166II | GTNNAC | 6 cut(s) | 683, 1022, 1162, 1567, 1970, 2347 |
| Hpy188III | TCNNGA | 8 cut(s) | 12, 74, 1121, 1238, 1784, 1879, 2224, 2314 |
| Hpy8I | GTNNAC | 6 cut(s) | 683, 1022, 1162, 1567, 1970, 2347 |
| HpyAV | CCTTC | 7 cut(s) | 654, 721, 993, 1177, 1345, 1702, 2113 |
| HpyCH4III | ACNGT | 4 cut(s) | 459, 795, 1394, 2063 |
| HpyCH4IV | ACGT | 2 cut(s) | 672, 1011 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 143, 149, 152, 335, 1765, 1864 |
| HpySE526I | ACGT | 2 cut(s) | 672, 1011 |
| HspAI | GCGC | 2 cut(s) | 55, 1850 |
| Ksp22I | TGATCA | 4 cut(s) | 76, 643, 982, 1138 |
| LguI | GCTCTTC | 1 cut(s) | 2042 |
| LmnI | GCTCC | 9 cut(s) | 565, 746, 901, 1069, 1085, 1202, 1493, 1949, 2163 |
| LweI | GCATC | 6 cut(s) | 244, 583, 919, 1270, 1469, 1925 |
| MaeI | CTAG | 5 cut(s) | 170, 1193, 1287, 2016, 2340 |
| MaeII | ACGT | 2 cut(s) | 672, 1011 |
| MaeIII | GTNAC | 4 cut(s) | 404, 892, 1309, 1796 |
| MfeI | CAATTG | 4 cut(s) | 690, 1029, 1769, 2162 |
| MflI | RGATCY | 1 cut(s) | 1682 |
| MhlI | GDGCHC | 4 cut(s) | 127, 570, 906, 2269 |
| MmeI | TCCRAC | 1 cut(s) | 1476 |
| MseI | TTAA | 5 cut(s) | 131, 1167, 1676, 1845, 2249 |
| MslI | CAYNNNNRTG | 3 cut(s) | 252, 2238, 2277 |
| MspA1I | CMGCKG | 2 cut(s) | 152, 1499 |
| MspR9I | CCNGG | 3 cut(s) | 35, 1937, 2155 |
| MunI | CAATTG | 4 cut(s) | 690, 1029, 1769, 2162 |
| Mva1269I | GAATGC | 2 cut(s) | 1780, 1858 |
| MvaI | CCWGG | 3 cut(s) | 35, 1937, 2155 |
| MvnI | CGCG | 1 cut(s) | 55 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 143, 149, 152, 335, 1765, 1864 |
| NcoI | CCATGG | 2 cut(s) | 1623, 1853 |
| NdeI | CATATG | 2 cut(s) | 2098, 2188 |
| NheI | GCTAGC | 1 cut(s) | 2015 |
| NlaIV | GGNNCC | 6 cut(s) | 16, 567, 903, 1321, 1684, 2159 |
| NmuCI | GTSAC | 3 cut(s) | 404, 892, 1309 |
| NspI | RCATGY | 4 cut(s) | 578, 914, 1797, 2237 |
| NspV | TTCGAA | 1 cut(s) | 1349 |
| PaeI | GCATGC | 2 cut(s) | 578, 914 |
| PaqCI | CACCTGC | 2 cut(s) | 598, 934 |
| PciSI | GCTCTTC | 1 cut(s) | 2042 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 408 |
| PctI | GAATGC | 2 cut(s) | 1780, 1858 |
| PfeI | GAWTC | 7 cut(s) | 38, 451, 508, 787, 844, 1610, 1726 |
| PflFI | GACNNNGTC | 1 cut(s) | 1961 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1490 |
| PfoI | TCCNGGA | 1 cut(s) | 1935 |
| Psp6I | CCWGG | 3 cut(s) | 33, 1935, 2153 |
| PspEI | GGTNACC | 1 cut(s) | 404 |
| PspGI | CCWGG | 3 cut(s) | 33, 1935, 2153 |
| PspN4I | GGNNCC | 6 cut(s) | 16, 567, 903, 1321, 1684, 2159 |
| PspPI | GGNCC | 2 cut(s) | 663, 1477 |
| PstI | CTGCAG | 2 cut(s) | 148, 1914 |
| PstNI | CAGNNNCTG | 4 cut(s) | 152, 155, 1597, 1607 |
| PsuI | RGATCY | 1 cut(s) | 1682 |
| PsyI | GACNNNGTC | 1 cut(s) | 1961 |
| PvuII | CAGCTG | 2 cut(s) | 152, 1499 |
| RsaI | GTAC | 4 cut(s) | 478, 671, 814, 1010 |
| RsaNI | GTAC | 4 cut(s) | 477, 670, 813, 1009 |
| RseI | CAYNNNNRTG | 3 cut(s) | 252, 2238, 2277 |
| SapI | GCTCTTC | 1 cut(s) | 2042 |
| SaqAI | TTAA | 5 cut(s) | 131, 1167, 1676, 1845, 2249 |
| Sau96I | GGNCC | 2 cut(s) | 663, 1477 |
| ScrFI | CCNGG | 3 cut(s) | 35, 1937, 2155 |
| SduI | GDGCHC | 4 cut(s) | 127, 570, 906, 2269 |
| SfaNI | GCATC | 6 cut(s) | 244, 583, 919, 1270, 1469, 1925 |
| SfcI | CTRYAG | 2 cut(s) | 144, 1910 |
| SfuI | TTCGAA | 1 cut(s) | 1349 |
| SinI | GGWCC | 2 cut(s) | 663, 1477 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 252, 2238, 2277 |
| SmlI | CTYRAG | 1 cut(s) | 138 |
| SmoI | CTYRAG | 1 cut(s) | 138 |
| SphI | GCATGC | 2 cut(s) | 578, 914 |
| SsiI | CCGC | 1 cut(s) | 949 |
| SspMI | CTAG | 5 cut(s) | 170, 1193, 1287, 2016, 2340 |
| StyD4I | CCNGG | 3 cut(s) | 33, 1935, 2153 |
| StyI | CCWWGG | 3 cut(s) | 1614, 1623, 1853 |
| TaaI | ACNGT | 4 cut(s) | 459, 795, 1394, 2063 |
| TaiI | ACGT | 2 cut(s) | 675, 1014 |
| TaqI | TCGA | 3 cut(s) | 807, 1122, 1349 |
| TaqII | GACCGA | 1 cut(s) | 680 |
| TfiI | GAWTC | 7 cut(s) | 38, 451, 508, 787, 844, 1610, 1726 |
| Tru1I | TTAA | 5 cut(s) | 131, 1167, 1676, 1845, 2249 |
| Tru9I | TTAA | 5 cut(s) | 131, 1167, 1676, 1845, 2249 |
| TscAI | CASTG | 6 cut(s) | 646, 985, 1212, 1399, 1761, 1807 |
| TseFI | GTSAC | 3 cut(s) | 404, 892, 1309 |
| Tsp45I | GTSAC | 3 cut(s) | 404, 892, 1309 |
| TspGWI | ACGGA | 3 cut(s) | 880, 1416, 1970 |
| TspRI | CASTG | 6 cut(s) | 646, 985, 1212, 1399, 1761, 1807 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1961 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1490 |
| VpaK11BI | GGWCC | 2 cut(s) | 663, 1477 |
| XapI | RAATTY | 3 cut(s) | 1586, 1990, 2029 |
| XceI | RCATGY | 4 cut(s) | 578, 914, 1797, 2237 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1487, 1621 |
| XmiI | GTMKAC | 1 cut(s) | 2346 |
| XspI | CTAG | 5 cut(s) | 170, 1193, 1287, 2016, 2340 |