Rh6BG039300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017235
Physical Location & Seq
Forward (+)
6426450 .. 6428075
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG039300.1

Sequence Viewer

Length: 855 bp
ATGAAGGCTGAAGCAAAAGTTGACAATGAGGCTTTGGAAGATAAGGGTTTGCCAGAAACTGAATCCAAGGTTTCCATGGTGAATGTTGTAGGAATTTCTATAATGATTTCAGTGTTGATTTCTGTCTTAATCGGATCCACAGCCTTCAGTTATGTGAAGAAAGGAAGGTCCACCTTGAATTCATCATATCGCTTGATAGGACTGCAGGCATCAACCGAAGATGAAGTCCGGGAGAAGAGAGGCGCTAGGGACTCTGTCTGTCAACTACCATTGCTGACTAGGAATTTGAGTGCAAGCTCTATGCGAGCTAGCACCACGCAGAATTTTCATTGCAAAATGAAGAGCTTACAGAACAGATCATTTTACCAACCACAAGGACTGAATGAATCTTATGAAGCTGAAAGGCAGGAGAAGAGTGGCTCAGAAAGAACTTTTGAAGAGAGTTCCTGGCTCCAATTGACTCCTCGATGGGATTACTCATATGGGAGTTTTACAACAATTGAGAAAAGCATAATCAAGAATGGACATGGAGATGCTGAAGAGCTTGTTACTCTTCAACCACACCATCTTTATGGGAATTTTACTGAAGATGAGAAAATTTCAATTAAGAATGGATATGCAGATGATGAGTTAATTACTCCTCAATGGGCTCGCCATCTTTATGGGAGTTTTACAACACAGGAGACGTACCCAATCAAGAATAGGCATAGAGATGATAAAGAGGCTGTTACTCCTCAACCTTACCATCTTTATGGGAATTTTACAACAGATGAAAAAAATTCAAATCAAGAATGTAAGTGCTGCAGTGACATGGAGGTGAAGAGGTTGTTATTCCTGTTGGCTCAAGCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

32.29

Weight (kDa)

5.75

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03071
rosa_chinensis RchiOBHm_Chr6g0247941
rosa_laevigata RLG00000015171
rosa_multiflora Rmu_sc0006106.1_g000013
rosa_roxburghii Rroxscaffold_180G00433170 Rroxscaffold_7G00213570
rosa_rugosa Rorug05G0529600
rosa_samantha Rh6AG044400 Rh6BG039200 Rh6BG039300 Rh6CG038000 Rh6DG035000
rosa_wichuraiana Rw6G003860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 129, 142
AcsI RAATTY 8 cut(s) 93, 178, 283, 322, 577, 597, 757, 778
AcuI CTGAAG 4 cut(s) 30, 130, 558, 606
AfaI GTAC 1 cut(s) 689
AgsI TTSAA 5 cut(s) 178, 437, 557, 603, 783
AjnI CCWGG 1 cut(s) 446
AluBI AGCT 5 cut(s) 297, 308, 345, 398, 544
AluI AGCT 5 cut(s) 297, 308, 345, 398, 544
Alw26I GTCTC 1 cut(s) 677
AlwI GGATC 2 cut(s) 129, 142
AlwNI CAGNNNCTG 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 801
ApoI RAATTY 8 cut(s) 93, 178, 283, 322, 577, 597, 757, 778
ArsI GACNNNNNNTTYG 4 cut(s) 210, 242, 268, 300
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 168
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 2 cut(s) 91, 829
AsuNHI GCTAGC 1 cut(s) 308
AvaII GGWCC 1 cut(s) 168
BamHI GGATCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 652
BbvI GCAGC 1 cut(s) 788
BccI CCATC 4 cut(s) 462, 573, 663, 753
BciT130I CCWGG 1 cut(s) 448
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 677
BfaI CTAG 3 cut(s) 246, 279, 309
BfmI CTRYAG 2 cut(s) 203, 802
BfoI RGCGCY 1 cut(s) 246
BisI GCNGC 1 cut(s) 802
BlsI GCNGC 1 cut(s) 803
Bme1390I CCNGG 2 cut(s) 230, 448
Bme18I GGWCC 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 2 cut(s) 136, 452
BmrFI CCNGG 2 cut(s) 230, 448
BmsI GCATC 2 cut(s) 218, 523
BmtI GCTAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 828
BpuMI CCSGG 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 66, 75
Bse3DI GCAATG 2 cut(s) 269, 328
BseBI CCWGG 1 cut(s) 448
BseDI CCNNGG 2 cut(s) 66, 75
BseMI GCAATG 2 cut(s) 269, 328
BseMII CTCAG 1 cut(s) 435
BseRI GAGGAG 3 cut(s) 453, 630, 723
BseXI GCAGC 1 cut(s) 788
BsiSI CCGG 1 cut(s) 229
BslFI GGGAC 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 677
BsmBI CGTCTC 1 cut(s) 677
BsmFI GGGAC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 652
Bsp143I GATC 2 cut(s) 134, 356
Bsp19I CCATGG 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 434
BspLI GGNNCC 2 cut(s) 136, 452
BspMAI CTGCAG 2 cut(s) 207, 806
BspOI GCTAGC 1 cut(s) 312
BspPI GGATC 2 cut(s) 129, 142
BspQI GCTCTTC 2 cut(s) 335, 534
BsrDI GCAATG 2 cut(s) 269, 328
BssECI CCNNGG 2 cut(s) 66, 75
BssMI GATC 2 cut(s) 134, 356
BssT1I CCWWGG 2 cut(s) 66, 75
Bst2UI CCWGG 1 cut(s) 448
Bst6I CTCTTC 7 cut(s) 230, 335, 407, 432, 534, 558, 815
BstC8I GCNNGC 5 cut(s) 207, 295, 306, 310, 652
BstDEI CTNAG 1 cut(s) 421
BstDSI CCRYGG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 2 cut(s) 137, 359
BstMAI GTCTC 1 cut(s) 677
BstMBI GATC 2 cut(s) 134, 356
BstNI CCWGG 1 cut(s) 448
BstSCI CCNGG 2 cut(s) 228, 446
BstSFI CTRYAG 2 cut(s) 203, 802
BstV1I GCAGC 1 cut(s) 788
BstX2I RGATCY 1 cut(s) 134
BstXI CCANNNNNNTGG 3 cut(s) 572, 662, 752
BstYI RGATCY 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 811
BtsIMutI CAGTG 2 cut(s) 117, 811
Cac8I GCNNGC 5 cut(s) 207, 295, 306, 310, 652
CaiI CAGNNNCTG 1 cut(s) 59
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 688
CviAII CATG 3 cut(s) 76, 527, 811
CviQI GTAC 1 cut(s) 688
DdeI CTNAG 1 cut(s) 421
DpnI GATC 2 cut(s) 136, 358
DpnII GATC 2 cut(s) 134, 356
Eam1104I CTCTTC 7 cut(s) 230, 335, 407, 432, 534, 558, 815
EarI CTCTTC 7 cut(s) 230, 335, 407, 432, 534, 558, 815
Eco130I CCWWGG 2 cut(s) 66, 75
Eco24I GRGCYC 1 cut(s) 652
Eco47I GGWCC 1 cut(s) 168
Eco57I CTGAAG 4 cut(s) 30, 130, 558, 606
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 446
EcoT14I CCWWGG 2 cut(s) 66, 75
EcoT38I GRGCYC 1 cut(s) 652
ErhI CCWWGG 2 cut(s) 66, 75
Esp3I CGTCTC 1 cut(s) 677
FaeI CATG 3 cut(s) 79, 530, 814
FaqI GGGAC 1 cut(s) 263
FatI CATG 3 cut(s) 75, 526, 810
FauNDI CATATG 1 cut(s) 481
Fnu4HI GCNGC 1 cut(s) 802
FriOI GRGCYC 1 cut(s) 652
Fsp4HI GCNGC 1 cut(s) 802
FspBI CTAG 3 cut(s) 246, 279, 309
GlaI GCGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 802
HaeII RGCGCY 1 cut(s) 246
HapII CCGG 1 cut(s) 229
HhaI GCGC 1 cut(s) 245
Hin1II CATG 3 cut(s) 79, 530, 814
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HincII GTYRAC 2 cut(s) 22, 263
HindII GTYRAC 2 cut(s) 22, 263
HinfI GANTC 4 cut(s) 62, 251, 386, 460
HpaII CCGG 1 cut(s) 229
HphI GGTGA 2 cut(s) 91, 829
Hpy166II GTNNAC 3 cut(s) 22, 171, 263
Hpy188I TCNGA 2 cut(s) 134, 424
Hpy188III TCNNGA 3 cut(s) 517, 697, 788
Hpy8I GTNNAC 3 cut(s) 22, 171, 263
HpyAV CCTTC 2 cut(s) 154, 159
HpyCH4IV ACGT 1 cut(s) 686
HpyCH4V TGCA 5 cut(s) 205, 293, 333, 620, 804
HpyF3I CTNAG 1 cut(s) 421
HpySE526I ACGT 1 cut(s) 686
Hsp92II CATG 3 cut(s) 79, 530, 814
HspAI GCGC 1 cut(s) 243
Kzo9I GATC 2 cut(s) 134, 356
LguI GCTCTTC 2 cut(s) 335, 534
LmnI GCTCC 1 cut(s) 456
LpnPI CCDG 8 cut(s) 66, 191, 242, 392, 433, 460, 665, 848
Lsp1109I GCAGC 1 cut(s) 788
LweI GCATC 2 cut(s) 218, 523
MaeI CTAG 3 cut(s) 246, 279, 309
MaeII ACGT 1 cut(s) 686
MaeIII GTNAC 3 cut(s) 547, 727, 806
MalI GATC 2 cut(s) 136, 358
MboI GATC 2 cut(s) 134, 356
MfeI CAATTG 2 cut(s) 455, 498
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 652
MlyI GAGTC 2 cut(s) 245, 454
MnlI CCTC 8 cut(s) 22, 233, 474, 651, 715, 744, 808, 816
MseI TTAA 3 cut(s) 128, 606, 632
MslI CAYNNNNRTG 6 cut(s) 531, 570, 660, 711, 750, 815
MspI CCGG 1 cut(s) 229
MspR9I CCNGG 2 cut(s) 230, 448
MunI CAATTG 2 cut(s) 455, 498
MvaI CCWGG 1 cut(s) 448
NciI CCSGG 1 cut(s) 230
NcoI CCATGG 1 cut(s) 75
NdeI CATATG 1 cut(s) 481
NdeII GATC 2 cut(s) 134, 356
NheI GCTAGC 1 cut(s) 308
NlaIII CATG 3 cut(s) 79, 530, 814
NlaIV GGNNCC 2 cut(s) 136, 452
NmuCI GTSAC 1 cut(s) 806
PciSI GCTCTTC 2 cut(s) 335, 534
PfeI GAWTC 2 cut(s) 62, 386
PflFI GACNNNGTC 1 cut(s) 254
PfoI TCCNGGA 1 cut(s) 228
PkrI GCNGC 1 cut(s) 803
PleI GAGTC 2 cut(s) 245, 454
PpsI GAGTC 2 cut(s) 245, 454
Psp6I CCWGG 1 cut(s) 446
PspGI CCWGG 1 cut(s) 446
PspN4I GGNNCC 2 cut(s) 136, 452
PspPI GGNCC 1 cut(s) 168
PstI CTGCAG 2 cut(s) 207, 806
PstNI CAGNNNCTG 1 cut(s) 59
PsuI RGATCY 1 cut(s) 134
PsyI GACNNNGTC 1 cut(s) 254
RsaI GTAC 1 cut(s) 689
RsaNI GTAC 1 cut(s) 688
RseI CAYNNNNRTG 6 cut(s) 531, 570, 660, 711, 750, 815
SapI GCTCTTC 2 cut(s) 335, 534
SaqAI TTAA 3 cut(s) 128, 606, 632
SatI GCNGC 1 cut(s) 802
Sau3AI GATC 2 cut(s) 134, 356
Sau96I GGNCC 1 cut(s) 168
SchI GAGTC 2 cut(s) 245, 454
ScrFI CCNGG 2 cut(s) 230, 448
SduI GDGCHC 1 cut(s) 652
SfaNI GCATC 2 cut(s) 218, 523
SfcI CTRYAG 2 cut(s) 203, 802
SinI GGWCC 1 cut(s) 168
SmiMI CAYNNNNRTG 6 cut(s) 531, 570, 660, 711, 750, 815
SmlI CTYRAG 1 cut(s) 843
SmoI CTYRAG 1 cut(s) 843
SspMI CTAG 3 cut(s) 246, 279, 309
StyD4I CCNGG 2 cut(s) 228, 446
StyI CCWWGG 2 cut(s) 66, 75
TaiI ACGT 1 cut(s) 689
TaqI TCGA 1 cut(s) 466
TfiI GAWTC 2 cut(s) 62, 386
Tru1I TTAA 3 cut(s) 128, 606, 632
Tru9I TTAA 3 cut(s) 128, 606, 632
TscAI CASTG 2 cut(s) 117, 811
TseFI GTSAC 1 cut(s) 806
TseI GCWGC 1 cut(s) 801
Tsp45I GTSAC 1 cut(s) 806
TspDTI ATGAA 8 cut(s) 17, 171, 237, 317, 353, 399, 408, 786
TspRI CASTG 2 cut(s) 117, 811
Tth111I GACNNNGTC 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 168
XapI RAATTY 8 cut(s) 93, 178, 283, 322, 577, 597, 757, 778
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XspI CTAG 3 cut(s) 246, 279, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.