Rh6CG038000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0017235
Physical Location & Seq
Forward (+)
3652190 .. 3654448
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG038000.1

Sequence Viewer

Length: 1548 bp
ATGACTACTCGTGTTGAACCGGAGTCCGTCACTTTGGAGCCCTTGCATGCTGATAGCTTGACTGATGCTTTGACAGAGCAGGTGCGGGTTGATGAGCATTATGTGTGTGATTTCAGTGATCATGGAACAGGAGGAAGGACTGAGTACATTGTGTGTGGACATACAATTGGGAGTGTCTCAGACATTGCAGCTTTTGAAGAAAAGGAGCAACTGGAGATTGGAGCTGCTGACAGCATTGGAGAAGTAGAGGTTGATCTCGAATATGAAGAAGTTGATCAACAAGCTGAAGCACCAGTTGACATTAAGGATTTGGATAAGAAGGGTCAGCTAGAGATTGGAGCAGTGGGGAACATTGTAGAAGTAGATTTGGATCAAGAATATGAAAAACTGTGTGAGCATCTTCAAGCTCAAAGTGAGATACCTACTGGTGCTGAAGTGGAGTTTGTCACTTTGGGTGCCTTGCATTGGGATAACATGAGTGCTTCGAAGGAGAGGGTGAGTGTTGATGGTTATCCTGTATTTGATTACAGAACAATGTCTGACTATGAAGTGTTTGGAAATACTATGGGGAGTATCTCTGACGTTGCATCTTTTGAAGAAAAGGACCAGCCAGAGATTGGAGCAGCTGATGACATTGGAGAAATAGTGGTTGATCTCAAATATAAAGTTGATGAAGAGGCTGAAGCAAAAGTTGACAATGAGGCTTTGGAAGATAAGGGTCTGCCAGAAACTGAATCCAAGGTTTCCATGGTGAATGTTGTAGTTCTGTCTATAATGATTTCAGCATTGATTTCTGTCTTAATCGGATCCACAGCCTTCAGTTATGTGAAGAAAGGAAGCTCAACCTTGAATCTTGCTATCTCTATGTGCCAACAATCACTGCCAAATAAGCAATTGAATGCAAGTCCTGATGTGGCATGTAACACTGCTCACATTTTCCAGCACATACCCTCTTCTTGGAACTGGATTAAAGCGCCATGGCATTCCAAGCTGAGCAGCTTCCAGAAGAGTTCATCATATCGCTTGATAGGACTGCAGGCATCAACTGAAGATGAAGTCCAGGAGAAGAGAGGCGCTACGGACTCTGTCTGTCAACAACCATTGCTGACTAAAAATTTGAGTGCAAGCTCTATGCCAGCTAGCACCACGCAGAATTTTCATTGTGAAATGAAGAGCTTACAGAACAGTTCATTTTACCAAACACAAGGACTGAATGAATCACATGAAGCTGAAAGGCAGGAGAAGGGTGGCTTAGAAAGAACTTTTGAAGAGAGTCCCTGGCTCCAATTGACTCCTCAATGGGATTACTCATATGGGAGTTTTACAACAATTGAGAAAAGCATAATCAAGAATGGACATGCAGATGATGAGTTAATTTCTCCTCAATGGGCTCGCCATCTTTATGGGAGTTTTACAACACAGGAGACATACCCAATCAAGAATAGGCATAGAGATGATGAAGAGGCTGTTACTCCTCAACCTTACCATCTTTATGGGAATTTTACAACAGATTCAAATCAAGAATGTGCTGCAGTGACATGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

515

Amino Acids

57.3

Weight (kDa)

4.46

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03071
rosa_chinensis RchiOBHm_Chr6g0247941
rosa_laevigata RLG00000015171
rosa_multiflora Rmu_sc0006106.1_g000013
rosa_roxburghii Rroxscaffold_180G00433170 Rroxscaffold_7G00213570
rosa_rugosa Rorug05G0529600
rosa_samantha Rh6AG044400 Rh6BG039200 Rh6BG039300 Rh6CG038000 Rh6DG035000
rosa_wichuraiana Rw6G003860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 70
AccB1I GGYRCC 1 cut(s) 455
AccB7I CCANNNNNTGG 1 cut(s) 617
AciI CCGC 1 cut(s) 85
AclWI GGATC 3 cut(s) 378, 801, 814
AcsI RAATTY 3 cut(s) 1114, 1153, 1498
AcuI CTGAAG 5 cut(s) 306, 453, 702, 802, 1068
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 3 cut(s) 465, 617, 957
AgsI TTSAA 8 cut(s) 17, 197, 404, 596, 850, 898, 1268, 1515
AjnI CCWGG 2 cut(s) 1059, 1277
Alw26I GTCTC 2 cut(s) 181, 1418
AlwI GGATC 3 cut(s) 378, 801, 814
AlwNI CAGNNNCTG 1 cut(s) 731
ApeKI GCWGC 5 cut(s) 188, 224, 623, 996, 1529
ApoI RAATTY 3 cut(s) 1114, 1153, 1498
ArsI GACNNNNNNTTYG 4 cut(s) 52, 84, 1099, 1131
AspLEI GCGC 2 cut(s) 976, 1076
AspS9I GGNCC 1 cut(s) 604
AsuHPI GGTGA 2 cut(s) 508, 763
AsuII TTCGAA 1 cut(s) 485
AsuNHI GCTAGC 1 cut(s) 1139
AvaII GGWCC 1 cut(s) 604
BamHI GGATCC 1 cut(s) 806
BanI GGYRCC 1 cut(s) 455
BanII GRGCYC 2 cut(s) 42, 1393
BauI CACGAG 1 cut(s) 9
BbvI GCAGC 5 cut(s) 200, 211, 635, 1008, 1516
BccI CCATC 3 cut(s) 500, 1404, 1494
BciT130I CCWGG 2 cut(s) 1061, 1279
BclI TGATCA 2 cut(s) 118, 274
BcoDI GTCTC 2 cut(s) 181, 1418
BfaI CTAG 2 cut(s) 329, 1140
BfmI CTRYAG 2 cut(s) 1034, 1530
BfoI RGCGCY 2 cut(s) 977, 1077
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 5 cut(s) 189, 225, 624, 997, 1530
BlpI GCTNAGC 1 cut(s) 992
BlsI GCNGC 5 cut(s) 190, 226, 625, 998, 1531
Bme1390I CCNGG 2 cut(s) 1061, 1279
Bme18I GGWCC 1 cut(s) 604
BmgT120I GGNCC 1 cut(s) 604
BmiI GGNNCC 4 cut(s) 39, 457, 808, 1283
BmrFI CCNGG 2 cut(s) 1061, 1279
BmsI GCATC 4 cut(s) 55, 406, 596, 1049
BmtI GCTAGC 1 cut(s) 1143
BpmI CTGGAG 1 cut(s) 233
Bpu1102I GCTNAGC 1 cut(s) 992
Bpu14I TTCGAA 1 cut(s) 485
BsaBI GATNNNNATC 3 cut(s) 369, 510, 1515
BsaJI CCNNGG 4 cut(s) 738, 747, 977, 1277
BsaWI WCCGGW 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 630, 660
Bsc4I CCNNNNNNNGG 3 cut(s) 465, 617, 957
Bse1I ACTGG 4 cut(s) 216, 293, 430, 968
Bse3DI GCAATG 2 cut(s) 183, 1100
Bse8I GATNNNNATC 3 cut(s) 369, 510, 1515
BseBI CCWGG 2 cut(s) 1061, 1279
BseDI CCNNGG 4 cut(s) 738, 747, 977, 1277
BseJI GATNNNNATC 3 cut(s) 369, 510, 1515
BseLI CCNNNNNNNGG 3 cut(s) 465, 617, 957
BseMI GCAATG 2 cut(s) 183, 1100
BseMII CTCAG 3 cut(s) 132, 192, 983
BseNI ACTGG 4 cut(s) 216, 293, 430, 968
BseRI GAGGAG 3 cut(s) 1284, 1371, 1464
BseXI GCAGC 5 cut(s) 200, 211, 635, 1008, 1516
BshNI GGYRCC 1 cut(s) 455
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 1260
BslI CCNNNNNNNGG 3 cut(s) 465, 617, 957
BsmAI GTCTC 2 cut(s) 181, 1418
BsmFI GGGAC 1 cut(s) 1260
BsmI GAATGC 2 cut(s) 904, 982
Bsp119I TTCGAA 1 cut(s) 485
Bsp1286I GDGCHC 2 cut(s) 42, 1393
Bsp143I GATC 6 cut(s) 118, 253, 274, 370, 652, 806
Bsp1720I GCTNAGC 1 cut(s) 992
Bsp19I CCATGG 2 cut(s) 747, 977
BspACI CCGC 1 cut(s) 85
BspCNI CTCAG 3 cut(s) 133, 191, 984
BspLI GGNNCC 4 cut(s) 39, 457, 808, 1283
BspMAI CTGCAG 2 cut(s) 1038, 1534
BspMI ACCTGC 1 cut(s) 70
BspOI GCTAGC 1 cut(s) 1143
BspPI GGATC 3 cut(s) 378, 801, 814
BspQI GCTCTTC 1 cut(s) 1166
BspT104I TTCGAA 1 cut(s) 485
BspT107I GGYRCC 1 cut(s) 455
BsrDI GCAATG 2 cut(s) 183, 1100
BsrI ACTGG 4 cut(s) 216, 293, 430, 968
BssECI CCNNGG 4 cut(s) 738, 747, 977, 1277
BssMI GATC 6 cut(s) 118, 253, 274, 370, 652, 806
BssSI CACGAG 1 cut(s) 9
BssT1I CCWWGG 3 cut(s) 738, 747, 977
Bst2BI CACGAG 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 1061, 1279
Bst4CI ACNGT 2 cut(s) 390, 1187
Bst6I CTCTTC 7 cut(s) 669, 958, 1001, 1061, 1166, 1263, 1455
BstBI TTCGAA 1 cut(s) 485
BstC8I GCNNGC 6 cut(s) 48, 1038, 1126, 1137, 1141, 1393
BstDEI CTNAG 4 cut(s) 141, 178, 992, 1252
BstDSI CCRYGG 2 cut(s) 747, 977
BstH2I RGCGCY 2 cut(s) 977, 1077
BstHHI GCGC 2 cut(s) 976, 1076
BstKTI GATC 6 cut(s) 121, 256, 277, 373, 655, 809
BstMAI GTCTC 2 cut(s) 181, 1418
BstMBI GATC 6 cut(s) 118, 253, 274, 370, 652, 806
BstMWI GCNNNNNNNGC 2 cut(s) 889, 988
BstNI CCWGG 2 cut(s) 1061, 1279
BstNSI RCATGY 3 cut(s) 50, 921, 1361
BstSCI CCNGG 2 cut(s) 1059, 1277
BstSFI CTRYAG 2 cut(s) 1034, 1530
BstV1I GCAGC 5 cut(s) 200, 211, 635, 1008, 1516
BstX2I RGATCY 1 cut(s) 806
BstXI CCANNNNNNTGG 2 cut(s) 1403, 1493
BstYI RGATCY 1 cut(s) 806
BtgI CCRYGG 2 cut(s) 747, 977
BtsI GCAGTG 4 cut(s) 348, 878, 924, 1539
BtsIMutI CAGTG 5 cut(s) 121, 348, 878, 924, 1539
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 6 cut(s) 48, 1038, 1126, 1137, 1141, 1393
CaiI CAGNNNCTG 1 cut(s) 731
CfoI GCGC 2 cut(s) 976, 1076
Cfr13I GGNCC 1 cut(s) 604
Csp6I GTAC 1 cut(s) 145
CviAII CATG 9 cut(s) 47, 122, 475, 748, 918, 978, 1223, 1358, 1539
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 4 cut(s) 141, 178, 992, 1252
DpnI GATC 6 cut(s) 120, 255, 276, 372, 654, 808
DpnII GATC 6 cut(s) 118, 253, 274, 370, 652, 806
Eam1104I CTCTTC 7 cut(s) 669, 958, 1001, 1061, 1166, 1263, 1455
EarI CTCTTC 7 cut(s) 669, 958, 1001, 1061, 1166, 1263, 1455
Eco130I CCWWGG 3 cut(s) 738, 747, 977
Eco24I GRGCYC 2 cut(s) 42, 1393
Eco47I GGWCC 1 cut(s) 604
Eco57I CTGAAG 5 cut(s) 306, 453, 702, 802, 1068
EcoRII CCWGG 2 cut(s) 1059, 1277
EcoT14I CCWWGG 3 cut(s) 738, 747, 977
EcoT38I GRGCYC 2 cut(s) 42, 1393
ErhI CCWWGG 3 cut(s) 738, 747, 977
FaeI CATG 9 cut(s) 50, 125, 478, 751, 921, 981, 1226, 1361, 1542
FalI AAGNNNNNCTT 2 cut(s) 1235, 1267
FaqI GGGAC 1 cut(s) 1260
FatI CATG 9 cut(s) 46, 121, 474, 747, 917, 977, 1222, 1357, 1538
FauI CCCGC 1 cut(s) 78
FauNDI CATATG 1 cut(s) 1312
FbaI TGATCA 2 cut(s) 118, 274
Fnu4HI GCNGC 5 cut(s) 189, 225, 624, 997, 1530
FriOI GRGCYC 2 cut(s) 42, 1393
Fsp4HI GCNGC 5 cut(s) 189, 225, 624, 997, 1530
FspBI CTAG 2 cut(s) 329, 1140
GlaI GCGC 2 cut(s) 975, 1075
GluI GCNGC 5 cut(s) 189, 225, 624, 997, 1530
GsuI CTGGAG 1 cut(s) 233
HaeII RGCGCY 2 cut(s) 977, 1077
HapII CCGG 1 cut(s) 20
HhaI GCGC 2 cut(s) 976, 1076
Hin1II CATG 9 cut(s) 50, 125, 478, 751, 921, 981, 1226, 1361, 1542
Hin6I GCGC 2 cut(s) 974, 1074
HinP1I GCGC 2 cut(s) 974, 1074
HincII GTYRAC 3 cut(s) 298, 694, 1094
HindII GTYRAC 3 cut(s) 298, 694, 1094
HinfI GANTC 8 cut(s) 23, 734, 850, 1082, 1217, 1273, 1291, 1511
HpaII CCGG 1 cut(s) 20
HphI GGTGA 2 cut(s) 508, 763
Hpy166II GTNNAC 4 cut(s) 158, 298, 694, 1094
Hpy188I TCNGA 4 cut(s) 181, 541, 580, 806
Hpy188III TCNNGA 7 cut(s) 257, 374, 908, 1003, 1348, 1438, 1520
Hpy8I GTNNAC 4 cut(s) 158, 298, 694, 1094
HpyAV CCTTC 5 cut(s) 129, 313, 481, 826, 1237
HpyCH4III ACNGT 2 cut(s) 390, 1187
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 9 cut(s) 46, 188, 463, 587, 902, 1036, 1124, 1361, 1532
HpyF10VI GCNNNNNNNGC 2 cut(s) 889, 988
HpyF3I CTNAG 4 cut(s) 141, 178, 992, 1252
HpySE526I ACGT 1 cut(s) 582
Hsp92II CATG 9 cut(s) 50, 125, 478, 751, 921, 981, 1226, 1361, 1542
HspAI GCGC 2 cut(s) 974, 1074
Ksp22I TGATCA 2 cut(s) 118, 274
Kzo9I GATC 6 cut(s) 118, 253, 274, 370, 652, 806
LguI GCTCTTC 1 cut(s) 1166
LmnI GCTCC 6 cut(s) 37, 205, 221, 338, 620, 1287
Lsp1109I GCAGC 5 cut(s) 200, 211, 635, 1008, 1516
LweI GCATC 4 cut(s) 55, 406, 596, 1049
MaeI CTAG 2 cut(s) 329, 1140
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 5 cut(s) 28, 445, 920, 1468, 1534
MalI GATC 6 cut(s) 120, 255, 276, 372, 654, 808
MboI GATC 6 cut(s) 118, 253, 274, 370, 652, 806
MfeI CAATTG 4 cut(s) 165, 893, 1286, 1329
MflI RGATCY 1 cut(s) 806
MhlI GDGCHC 2 cut(s) 42, 1393
MluCI AATT 8 cut(s) 165, 893, 1114, 1153, 1286, 1329, 1374, 1498
MlyI GAGTC 4 cut(s) 32, 1076, 1282, 1285
MseI TTAA 4 cut(s) 303, 800, 969, 1373
MslI CAYNNNNRTG 5 cut(s) 1362, 1401, 1452, 1491, 1543
MspA1I CMGCKG 1 cut(s) 626
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 2 cut(s) 1061, 1279
MunI CAATTG 4 cut(s) 165, 893, 1286, 1329
Mva1269I GAATGC 2 cut(s) 904, 982
MvaI CCWGG 2 cut(s) 1061, 1279
MwoI GCNNNNNNNGC 2 cut(s) 889, 988
NcoI CCATGG 2 cut(s) 747, 977
NdeI CATATG 1 cut(s) 1312
NdeII GATC 6 cut(s) 118, 253, 274, 370, 652, 806
NheI GCTAGC 1 cut(s) 1139
NlaIII CATG 9 cut(s) 50, 125, 478, 751, 921, 981, 1226, 1361, 1542
NlaIV GGNNCC 4 cut(s) 39, 457, 808, 1283
NmuCI GTSAC 3 cut(s) 28, 445, 1534
NspI RCATGY 3 cut(s) 50, 921, 1361
NspV TTCGAA 1 cut(s) 485
PaeI GCATGC 1 cut(s) 50
PaqCI CACCTGC 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 1166
PctI GAATGC 2 cut(s) 904, 982
PfeI GAWTC 4 cut(s) 734, 850, 1217, 1511
PflFI GACNNNGTC 1 cut(s) 1085
PflMI CCANNNNNTGG 1 cut(s) 617
PfoI TCCNGGA 1 cut(s) 1059
PkrI GCNGC 5 cut(s) 190, 226, 625, 998, 1531
PleI GAGTC 4 cut(s) 31, 1076, 1281, 1285
PpsI GAGTC 4 cut(s) 31, 1076, 1281, 1285
Psp6I CCWGG 2 cut(s) 1059, 1277
PspGI CCWGG 2 cut(s) 1059, 1277
PspN4I GGNNCC 4 cut(s) 39, 457, 808, 1283
PspPI GGNCC 1 cut(s) 604
PstI CTGCAG 2 cut(s) 1038, 1534
PstNI CAGNNNCTG 1 cut(s) 731
PsuI RGATCY 1 cut(s) 806
PsyI GACNNNGTC 1 cut(s) 1085
PvuII CAGCTG 1 cut(s) 626
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 5 cut(s) 1362, 1401, 1452, 1491, 1543
SapI GCTCTTC 1 cut(s) 1166
SaqAI TTAA 4 cut(s) 303, 800, 969, 1373
SatI GCNGC 5 cut(s) 189, 225, 624, 997, 1530
Sau3AI GATC 6 cut(s) 118, 253, 274, 370, 652, 806
Sau96I GGNCC 1 cut(s) 604
SchI GAGTC 4 cut(s) 32, 1076, 1282, 1285
ScrFI CCNGG 2 cut(s) 1061, 1279
SduI GDGCHC 2 cut(s) 42, 1393
SfaNI GCATC 4 cut(s) 55, 406, 596, 1049
SfcI CTRYAG 2 cut(s) 1034, 1530
SfuI TTCGAA 1 cut(s) 485
SinI GGWCC 1 cut(s) 604
SmiMI CAYNNNNRTG 5 cut(s) 1362, 1401, 1452, 1491, 1543
SphI GCATGC 1 cut(s) 50
Sse9I AATT 8 cut(s) 165, 893, 1114, 1153, 1286, 1329, 1374, 1498
SsiI CCGC 1 cut(s) 85
SspMI CTAG 2 cut(s) 329, 1140
StyD4I CCNGG 2 cut(s) 1059, 1277
StyI CCWWGG 3 cut(s) 738, 747, 977
TaaI ACNGT 2 cut(s) 390, 1187
TaiI ACGT 1 cut(s) 585
TaqI TCGA 2 cut(s) 258, 485
TasI AATT 8 cut(s) 165, 893, 1114, 1153, 1286, 1329, 1374, 1498
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 4 cut(s) 734, 850, 1217, 1511
Tru1I TTAA 4 cut(s) 303, 800, 969, 1373
Tru9I TTAA 4 cut(s) 303, 800, 969, 1373
TscAI CASTG 5 cut(s) 121, 348, 885, 931, 1539
TseFI GTSAC 3 cut(s) 28, 445, 1534
TseI GCWGC 5 cut(s) 188, 224, 623, 996, 1529
Tsp45I GTSAC 3 cut(s) 28, 445, 1534
TspGWI ACGGA 2 cut(s) 16, 1094
TspRI CASTG 5 cut(s) 121, 348, 885, 931, 1539
Tth111I GACNNNGTC 1 cut(s) 1085
Van91I CCANNNNNTGG 1 cut(s) 617
VpaK11BI GGWCC 1 cut(s) 604
XapI RAATTY 3 cut(s) 1114, 1153, 1498
XceI RCATGY 3 cut(s) 50, 921, 1361
XcmI CCANNNNNNNNNTGG 2 cut(s) 614, 745
XspI CTAG 2 cut(s) 329, 1140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.