Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008101

Physical Location & Seq

Genomic Coordinates Reverse (-)

6455238 .. 6456703

Gene Structure 1466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAAGTTTGAAATGGGAATAGAACCCAATGAGGTTACGCTTATATCTGTAGTTTCAGCTTGTGCTAGCAGTGGAGCTGTTGATGAAGGCATGTACATTCCTGGACTTGCACTGAAATTGGGTGTGCTGTGGGAACCAAAGCTTGTTAATTCTCTGATTAATCTGTATGGAAAGTTGGGCTATTGGGATGCAGTTTGTCGATTTGTTGAGACTATGCCGATACAGAATGTAGTGTCATGGAATTTATTAATGATAGCAATTTACGCTCAAAATGGATCTGCAGCGGACGGGTTGAATTTTTTTAATCTCATGAGAAGGGCTGGAGTTTATCCTGATGATGGTACTCTTGTGTCTTTGCTTCAAGTTTGCGAGAATTTAGGTTTAGGGAATCTAGCACAGGGCGTTATGCTACGCATGGGTATGGACGAGAAGCTATGGAGATCTTTGAAAGCATGCATGGTTAGGAAAGGTGTGCAGCCTGATCACGTCACCTTCACTCACTTGTTAAGTGCTTGTAGCCATTCAGGACTTATCAAGGAAGGGAGAAATTACTTCGACATTATGTCTGAAGTTTATGGAGTAGAGCCTAGGTTGGAACACTATTCATGCATGGTTGATCTTCTAGGTCGCTGTGGGCTGCTGCATGATGCTTATGAGCTGATTAAACGAATGCCAATGGAGCCAAACTCTGGCGTATGGGGGGCTCTTTTCGGTGCTTGTAGGGTGCATGGTAACATTGAGCTTGGGAAGGAAGTTGCAGAAAGGTTATTTGCTTTAGAGCCATCCGATTCTAGAAACTATATCATGCTATCAAATGTGTACTCCGCAGCTGGTTTGTGGAGGGATGCTTCAAAGGTGAGGGCTTTGATGAAGGAGAAAGATCTCGCGAGAACACCCGGTGCAGTTTTATTGAATATGGAAATAAAATTCATCGCTTTGTTGTGGGCAGTGAAAGAAGATATGATCAGTAAGCACAGTGAGAAATTAGCCATTGCATTTGGGCTTTTGGTGATTAATGCTGGCATGCCAATGATTATTACCATGAACCTTCGAATTTTTGGTGTCTGTCACGGCGCTGCAAAGTTCATATCATTGATTGAGAAGCGAACTATCATAATTCGAGATTCTAAGCGGTTCCATCATTTTACTAATGGTATATGCACTCGTGGAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

393

Amino Acids

43.81

Weight (kDa)

7.99

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	243 - 301	1.7e-15	E motif
DYW_deaminase	PF14432	318 - 393	1.9e-26	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40410
fragaria_vesca	FvH4_2g00730
malus_domestica	MD05G1003000.v1.1 MD10G1003900.v1.1
prunus_persica	Prupe.8G006400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0251111
rosa_laevigata	RLG00000015483
rosa_multiflora	Rmu_co8188818.1_g000001 Rmu_co8231405.1_g000001 Rmu_sc0002219.1_g000009 Rmu_sc0002219.1_g000010 Rmu_sc0002219.1_g000016 Rmu_sc0002219.1_g000017 Rmu_sc0002960.1_g000013 Rmu_sc0011355.1_g000002
rosa_roxburghii	Rroxscaffold_7G00217030
rosa_rugosa	Rorug05G0500400 Rorug05G0500500
rosa_samantha	Rh6AG008600 Rh6AG008700 Rh6AG009100 Rh6BG002600 Rh6DG006400
rosa_wichuraiana	Rw6G000930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	689
AccII	CGCG	1 cut(s)	887
AciI	CCGC	3 cut(s)	284, 825, 1132
AclWI	GGATC	1 cut(s)	283
AcsI	RAATTY	5 cut(s)	241, 295, 373, 926, 1053
AcuI	CTGAAG	1 cut(s)	588
AdeI	CACNNNGTG	1 cut(s)	899
AfaI	GTAC	3 cut(s)	95, 343, 821
AfiI	CCNNNNNNNGG	2 cut(s)	338, 689
AgsI	TTSAA	6 cut(s)	11, 295, 362, 448, 852, 913
AhdI	GACNNNNNGTC	1 cut(s)	562
AjiI	CACGTC	1 cut(s)	487
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	7 cut(s)	59, 77, 142, 433, 658, 742, 830
AluI	AGCT	7 cut(s)	59, 77, 142, 433, 658, 742, 830
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	283
ApeKI	GCWGC	6 cut(s)	281, 475, 637, 640, 827, 1076
ApoI	RAATTY	5 cut(s)	241, 295, 373, 926, 1053
AseI	ATTAAT	3 cut(s)	159, 248, 1014
AspA2I	CCTAGG	1 cut(s)	587
AspLEI	GCGC	1 cut(s)	1076
AsuC2I	CCSGG	1 cut(s)	897
AsuHPI	GGTGA	3 cut(s)	481, 868, 1021
AsuII	TTCGAA	1 cut(s)	1051
AsuNHI	GCTAGC	1 cut(s)	65
AvrII	CCTAGG	1 cut(s)	587
BaeI	ACNNNNGTAYC	2 cut(s)	333, 366
BanII	GRGCYC	1 cut(s)	706
BauI	CACGAG	1 cut(s)	1164
BbvI	GCAGC	6 cut(s)	293, 487, 624, 627, 839, 1063
BccI	CCATC	3 cut(s)	332, 790, 1146
BceAI	ACGGC	1 cut(s)	1087
BciT130I	CCWGG	1 cut(s)	102
BclI	TGATCA	2 cut(s)	481, 963
BcnI	CCSGG	1 cut(s)	897
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	5 cut(s)	66, 392, 588, 623, 792
BfmI	CTRYAG	2 cut(s)	48, 279
BfoI	RGCGCY	1 cut(s)	1077
BglII	AGATCT	2 cut(s)	440, 880
BisI	GCNGC	6 cut(s)	282, 476, 638, 641, 828, 1077
BlnI	CCTAGG	1 cut(s)	587
BlsI	GCNGC	6 cut(s)	283, 477, 639, 642, 829, 1078
Bme1390I	CCNGG	2 cut(s)	102, 897
BmeRI	GACNNNNNGTC	1 cut(s)	562
BmgBI	CACGTC	1 cut(s)	487
BmiI	GGNNCC	3 cut(s)	135, 681, 1136
BmrFI	CCNGG	2 cut(s)	102, 897
BmsI	GCATC	3 cut(s)	178, 637, 835
BmtI	GCTAGC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	671, 703
BpmI	CTGGAG	1 cut(s)	342
Bpu14I	TTCGAA	1 cut(s)	1051
BpuMI	CCSGG	1 cut(s)	897
BsaJI	CCNNGG	1 cut(s)	587
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 689
Bse3DI	GCAATG	1 cut(s)	990
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	587
BseGI	GGATG	3 cut(s)	193, 782, 850
BseLI	CCNNNNNNNGG	2 cut(s)	338, 689
BseMI	GCAATG	1 cut(s)	990
BseXI	GCAGC	6 cut(s)	293, 487, 624, 627, 839, 1063
BsgI	GTGCAG	2 cut(s)	494, 921
Bsh1236I	CGCG	1 cut(s)	887
BsiSI	CCGG	1 cut(s)	897
BslI	CCNNNNNNNGG	2 cut(s)	338, 689
BsmAI	GTCTC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	675
Bsp119I	TTCGAA	1 cut(s)	1051
Bsp1286I	GDGCHC	1 cut(s)	706
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	6 cut(s)	275, 440, 481, 616, 880, 963
Bsp68I	TCGCGA	1 cut(s)	887
BspACI	CCGC	3 cut(s)	284, 825, 1132
BspFNI	CGCG	1 cut(s)	887
BspHI	TCATGA	1 cut(s)	309
BspLI	GGNNCC	3 cut(s)	135, 681, 1136
BspMAI	CTGCAG	1 cut(s)	283
BspOI	GCTAGC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	283
BspT104I	TTCGAA	1 cut(s)	1051
BsrDI	GCAATG	1 cut(s)	990
BsrGI	TGTACA	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	587
BssMI	GATC	6 cut(s)	275, 440, 481, 616, 880, 963
BssSI	CACGAG	1 cut(s)	1164
BssT1I	CCWWGG	1 cut(s)	587
Bst2BI	CACGAG	1 cut(s)	1164
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	977
BstAUI	TGTACA	1 cut(s)	93
BstBI	TTCGAA	1 cut(s)	1051
BstC8I	GCNNGC	4 cut(s)	67, 454, 1021, 1025
BstDEI	CTNAG	1 cut(s)	1128
BstF5I	GGATG	3 cut(s)	193, 782, 850
BstFNI	CGCG	1 cut(s)	887
BstH2I	RGCGCY	1 cut(s)	1077
BstHHI	GCGC	1 cut(s)	1076
BstKTI	GATC	6 cut(s)	278, 443, 484, 619, 883, 966
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	6 cut(s)	275, 440, 481, 616, 880, 963
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 679
BstNI	CCWGG	1 cut(s)	102
BstNSI	RCATGY	3 cut(s)	94, 456, 1027
BstSCI	CCNGG	2 cut(s)	100, 895
BstSFI	CTRYAG	2 cut(s)	48, 279
BstUI	CGCG	1 cut(s)	887
BstV1I	GCAGC	6 cut(s)	293, 487, 624, 627, 839, 1063
BstX2I	RGATCY	3 cut(s)	275, 440, 880
BstYI	RGATCY	3 cut(s)	275, 440, 880
BtgZI	GCGATG	1 cut(s)	916
BtrI	CACGTC	1 cut(s)	487
BtsCI	GGATG	3 cut(s)	193, 782, 850
BtsI	GCAGTG	2 cut(s)	76, 954
BtsIMutI	CAGTG	4 cut(s)	76, 110, 954, 982
BtuMI	TCGCGA	1 cut(s)	887
Cac8I	GCNNGC	4 cut(s)	67, 454, 1021, 1025
CciI	TCATGA	1 cut(s)	309
CfoI	GCGC	1 cut(s)	1076
Csp6I	GTAC	3 cut(s)	94, 342, 820
CviQI	GTAC	3 cut(s)	94, 342, 820
DdeI	CTNAG	1 cut(s)	1128
DpnI	GATC	6 cut(s)	277, 442, 483, 618, 882, 965
DpnII	GATC	6 cut(s)	275, 440, 481, 616, 880, 963
DraIII	CACNNNGTG	1 cut(s)	899
DriI	GACNNNNNGTC	1 cut(s)	562
Eam1105I	GACNNNNNGTC	1 cut(s)	562
Eco130I	CCWWGG	1 cut(s)	587
Eco24I	GRGCYC	1 cut(s)	706
Eco57I	CTGAAG	1 cut(s)	588
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	587
EcoT22I	ATGCAT	2 cut(s)	458, 611
EcoT38I	GRGCYC	1 cut(s)	706
ErhI	CCWWGG	1 cut(s)	587
FbaI	TGATCA	2 cut(s)	481, 963
Fnu4HI	GCNGC	6 cut(s)	282, 476, 638, 641, 828, 1077
FokI	GGATG	3 cut(s)	200, 769, 857
FriOI	GRGCYC	1 cut(s)	706
Fsp4HI	GCNGC	6 cut(s)	282, 476, 638, 641, 828, 1077
FspBI	CTAG	5 cut(s)	66, 392, 588, 623, 792
GlaI	GCGC	1 cut(s)	1075
GluI	GCNGC	6 cut(s)	282, 476, 638, 641, 828, 1077
GsuI	CTGGAG	1 cut(s)	342
HaeII	RGCGCY	1 cut(s)	1077
HapII	CCGG	1 cut(s)	897
HhaI	GCGC	1 cut(s)	1076
Hin6I	GCGC	1 cut(s)	1074
HinP1I	GCGC	1 cut(s)	1074
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	3 cut(s)	388, 788, 1124
HpaII	CCGG	1 cut(s)	897
HphI	GGTGA	3 cut(s)	481, 868, 1021
Hpy166II	GTNNAC	1 cut(s)	820
Hpy188I	TCNGA	3 cut(s)	156, 568, 787
Hpy188III	TCNNGA	6 cut(s)	310, 332, 525, 792, 886, 1121
Hpy8I	GTNNAC	1 cut(s)	820
HpyAV	CCTTC	7 cut(s)	80, 309, 502, 533, 742, 865, 1058
HpyCH4III	ACNGT	1 cut(s)	977
HpyCH4IV	ACGT	1 cut(s)	486
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 679
HpyF3I	CTNAG	1 cut(s)	1128
HpySE526I	ACGT	1 cut(s)	486
HspAI	GCGC	1 cut(s)	1074
Ksp22I	TGATCA	2 cut(s)	481, 963
Kzo9I	GATC	6 cut(s)	275, 440, 481, 616, 880, 963
LmnI	GCTCC	2 cut(s)	74, 679
Lsp1109I	GCAGC	6 cut(s)	293, 487, 624, 627, 839, 1063
LweI	GCATC	3 cut(s)	178, 637, 835
MaeI	CTAG	5 cut(s)	66, 392, 588, 623, 792
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	4 cut(s)	34, 487, 731, 1067
MalI	GATC	6 cut(s)	277, 442, 483, 618, 882, 965
MboI	GATC	6 cut(s)	275, 440, 481, 616, 880, 963
MboII	GAAGA	2 cut(s)	611, 968
MflI	RGATCY	3 cut(s)	275, 440, 880
MhlI	GDGCHC	1 cut(s)	706
MmeI	TCCRAC	1 cut(s)	573
MnlI	CCTC	3 cut(s)	25, 834, 852
Mph1103I	ATGCAT	2 cut(s)	458, 611
MseI	TTAA	7 cut(s)	147, 159, 248, 303, 506, 663, 1014
MslI	CAYNNNNRTG	2 cut(s)	419, 1028
MspA1I	CMGCKG	2 cut(s)	284, 830
MspI	CCGG	1 cut(s)	897
MspR9I	CCNGG	2 cut(s)	102, 897
Mva1269I	GAATGC	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	102
MvnI	CGCG	1 cut(s)	887
MwoI	GCNNNNNNNGC	2 cut(s)	263, 679
NciI	CCSGG	1 cut(s)	897
NdeII	GATC	6 cut(s)	275, 440, 481, 616, 880, 963
NheI	GCTAGC	1 cut(s)	65
NlaIV	GGNNCC	3 cut(s)	135, 681, 1136
NmuCI	GTSAC	2 cut(s)	487, 1067
NruI	TCGCGA	1 cut(s)	887
NsiI	ATGCAT	2 cut(s)	458, 611
NspI	RCATGY	3 cut(s)	94, 456, 1027
NspV	TTCGAA	1 cut(s)	1051
PaeI	GCATGC	2 cut(s)	456, 1027
PagI	TCATGA	1 cut(s)	309
PctI	GAATGC	1 cut(s)	675
PfeI	GAWTC	3 cut(s)	388, 788, 1124
PflMI	CCANNNNNTGG	1 cut(s)	689
PfoI	TCCNGGA	1 cut(s)	100
PkrI	GCNGC	6 cut(s)	283, 477, 639, 642, 829, 1078
PshBI	ATTAAT	3 cut(s)	159, 248, 1014
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	3 cut(s)	135, 681, 1136
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	3 cut(s)	275, 440, 880
PvuII	CAGCTG	1 cut(s)	830
RruI	TCGCGA	1 cut(s)	887
RsaI	GTAC	3 cut(s)	95, 343, 821
RsaNI	GTAC	3 cut(s)	94, 342, 820
RseI	CAYNNNNRTG	2 cut(s)	419, 1028
SaqAI	TTAA	7 cut(s)	147, 159, 248, 303, 506, 663, 1014
SatI	GCNGC	6 cut(s)	282, 476, 638, 641, 828, 1077
Sau3AI	GATC	6 cut(s)	275, 440, 481, 616, 880, 963
ScrFI	CCNGG	2 cut(s)	102, 897
SduI	GDGCHC	1 cut(s)	706
SfaNI	GCATC	3 cut(s)	178, 637, 835
SfcI	CTRYAG	2 cut(s)	48, 279
SfuI	TTCGAA	1 cut(s)	1051
SmiMI	CAYNNNNRTG	2 cut(s)	419, 1028
SphI	GCATGC	2 cut(s)	456, 1027
SsiI	CCGC	3 cut(s)	284, 825, 1132
SspMI	CTAG	5 cut(s)	66, 392, 588, 623, 792
StyD4I	CCNGG	2 cut(s)	100, 895
StyI	CCWWGG	1 cut(s)	587
TaaI	ACNGT	1 cut(s)	977
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	4 cut(s)	199, 555, 1051, 1120
TatI	WGTACW	2 cut(s)	93, 819
TfiI	GAWTC	3 cut(s)	388, 788, 1124
Tru1I	TTAA	7 cut(s)	147, 159, 248, 303, 506, 663, 1014
Tru9I	TTAA	7 cut(s)	147, 159, 248, 303, 506, 663, 1014
TscAI	CASTG	4 cut(s)	76, 117, 954, 982
TseFI	GTSAC	2 cut(s)	487, 1067
TseI	GCWGC	6 cut(s)	281, 475, 637, 640, 827, 1076
Tsp45I	GTSAC	2 cut(s)	487, 1067
TspDTI	ATGAA	7 cut(s)	17, 99, 594, 884, 919, 1058, 1075
TspRI	CASTG	4 cut(s)	76, 117, 954, 982
Van91I	CCANNNNNTGG	1 cut(s)	689
VspI	ATTAAT	3 cut(s)	159, 248, 1014
XapI	RAATTY	5 cut(s)	241, 295, 373, 926, 1053
XbaI	TCTAGA	1 cut(s)	791
XceI	RCATGY	3 cut(s)	94, 456, 1027
XmaJI	CCTAGG	1 cut(s)	587
XspI	CTAG	5 cut(s)	66, 392, 588, 623, 792
Zsp2I	ATGCAT	2 cut(s)	458, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.