Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016456

Physical Location & Seq

Genomic Coordinates Forward (+)

9405559 .. 9406802

Gene Structure 1244 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGATAGCTGAGGTAAAAAAGTCTTGCAATGAGCTCTGTAGCCTGGCGATTTCATTGGACCATCTTAAGGATGCTGAGTTCCCACCACTTCTTGATTTATGTATGGAACTTGATGCTTCTGAGGTTGAAGCAGTTGACATACGCAATGAATCATTGCATGTTTTGAATGGAAAATATGCGCTGTTGTTGATGCGTGCTATCAATCAAAAGCTTCGAGTTGTTGATCTCCAAGATTTGGCACTTGGAAAGGATTTCTTGAGGGATCTTTCACAGAGAGGTTTGACATGCCAAGTTTTAAACTTGAGATCTTCACATTTTCGGAAGCTCAATATGATGGGAGAGTTCATGCGGATACCCACCCTCAACCTTGACTTTAGTACTTCACTCACTAGTTTTCAGGAGGATTGTTTTTCTTGCATGCCGAATCTAATGTGCCTCTCTCTGTGCGAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

151

Amino Acids

17.12

Weight (kDa)

5.01

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHU1_N	PF20919	3 - 151	2.9e-41	DWD hypersensitive to UV-B 1, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016456)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0254281 RchiOBHm_Chr6g0254361
rosa_laevigata	RLG00000014925
rosa_multiflora	Rmu_co8084018.1_g000001 Rmu_sc0003666.1_g000005 Rmu_sc0006565.1_g000003 Rmu_sc0007138.1_g000007 Rmu_sc0007138.1_g000008 Rmu_sc0007138.1_g000011 Rmu_sc0015027.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210900
rosa_rugosa	Rorug04G0165100
rosa_samantha	Rh6AG068000 Rh6BG060900
rosa_wichuraiana	Rw6G006050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	235
AciI	CCGC	1 cut(s)	349
AclWI	GGATC	1 cut(s)	270
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	2 cut(s)	67, 235
AflII	CTTAAG	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	128, 166
AhlI	ACTAGT	1 cut(s)	389
AjnI	CCWGG	1 cut(s)	42
AloI	GAACNNNNNNTCC	2 cut(s)	62, 94
AluBI	AGCT	4 cut(s)	8, 34, 211, 325
AluI	AGCT	4 cut(s)	8, 34, 211, 325
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	36
BbvCI	CCTCAGC	1 cut(s)	9
BccI	CCATC	2 cut(s)	69, 328
BciT130I	CCWGG	1 cut(s)	44
BciVI	GTATCC	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	443
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	37
BfrI	CTTAAG	1 cut(s)	65
BfuI	GTATCC	1 cut(s)	345
BglII	AGATCT	1 cut(s)	305
BmcAI	AGTACT	1 cut(s)	379
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	44
BmsI	GCATC	3 cut(s)	61, 103, 180
Bpu10I	CCTNAGC	1 cut(s)	9
BpuEI	CTTGAG	2 cut(s)	277, 322
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 235
Bse3DI	GCAATG	3 cut(s)	34, 151, 152
BseBI	CCWGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	2 cut(s)	67, 235
BseMI	GCAATG	3 cut(s)	34, 151, 152
BseMII	CTCAG	2 cut(s)	66, 111
BsiHKAI	GWGCWC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	67, 235
BsmAI	GTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	3 cut(s)	223, 262, 305
BspACI	CCGC	1 cut(s)	349
BspCNI	CTCAG	2 cut(s)	67, 112
BspPI	GGATC	1 cut(s)	270
BspTI	CTTAAG	1 cut(s)	65
BsrDI	GCAATG	3 cut(s)	34, 151, 152
BssMI	GATC	3 cut(s)	223, 262, 305
Bst2UI	CCWGG	1 cut(s)	44
BstAFI	CTTAAG	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	195, 419
BstDEI	CTNAG	3 cut(s)	9, 75, 120
BstF5I	GGATG	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	3 cut(s)	226, 265, 308
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	3 cut(s)	223, 262, 305
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	3 cut(s)	161, 288, 421
BstSCI	CCNGG	1 cut(s)	42
BstSFI	CTRYAG	1 cut(s)	37
BstX2I	RGATCY	2 cut(s)	262, 305
BstYI	RGATCY	2 cut(s)	262, 305
BsuI	GTATCC	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	195, 419
CfoI	GCGC	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	5 cut(s)	158, 285, 346, 418, 453
CviJI	RGCY	5 cut(s)	8, 34, 42, 211, 325
CviKI_1	RGCY	5 cut(s)	8, 34, 42, 211, 325
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	3 cut(s)	9, 75, 120
DpnI	GATC	3 cut(s)	225, 264, 307
DpnII	GATC	3 cut(s)	223, 262, 305
DraI	TTTAAA	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	34
EcoICRI	GAGCTC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	36
FaeI	CATG	5 cut(s)	161, 288, 349, 421, 456
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FatI	CATG	5 cut(s)	157, 284, 345, 417, 452
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	36
FspBI	CTAG	1 cut(s)	390
GlaI	GCGC	1 cut(s)	180
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	5 cut(s)	161, 288, 349, 421, 456
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	149, 424
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	121, 321
Hpy188III	TCNNGA	3 cut(s)	92, 256, 398
Hpy8I	GTNNAC	1 cut(s)	136
HpyCH4V	TGCA	3 cut(s)	27, 157, 417
HpyF3I	CTNAG	3 cut(s)	9, 75, 120
Hsp92II	CATG	5 cut(s)	161, 288, 349, 421, 456
HspAI	GCGC	1 cut(s)	179
Kzo9I	GATC	3 cut(s)	223, 262, 305
LpnPI	CCDG	3 cut(s)	29, 56, 383
LweI	GCATC	3 cut(s)	61, 103, 180
MaeI	CTAG	1 cut(s)	390
MalI	GATC	3 cut(s)	225, 264, 307
MboI	GATC	3 cut(s)	223, 262, 305
MboII	GAAGA	1 cut(s)	300
MflI	RGATCY	2 cut(s)	262, 305
MhlI	GDGCHC	1 cut(s)	36
MnlI	CCTC	7 cut(s)	4, 115, 252, 269, 371, 394, 446
MseI	TTAA	2 cut(s)	66, 296
MspCI	CTTAAG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
NdeII	GATC	3 cut(s)	223, 262, 305
NlaIII	CATG	5 cut(s)	161, 288, 349, 421, 456
NspI	RCATGY	3 cut(s)	161, 288, 421
PaeI	GCATGC	1 cut(s)	421
PfeI	GAWTC	2 cut(s)	149, 424
PflMI	CCANNNNNTGG	1 cut(s)	235
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	262, 305
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	66, 296
Sau3AI	GATC	3 cut(s)	223, 262, 305
Sau96I	GGNCC	1 cut(s)	58
ScaI	AGTACT	1 cut(s)	379
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	8 cut(s)	10, 15, 36, 126, 213, 280, 327, 369
SfaNI	GCATC	3 cut(s)	61, 103, 180
SfcI	CTRYAG	1 cut(s)	37
SinI	GGWCC	1 cut(s)	58
SmlI	CTYRAG	3 cut(s)	65, 256, 301
SmoI	CTYRAG	3 cut(s)	65, 256, 301
SpeI	ACTAGT	1 cut(s)	389
SphI	GCATGC	1 cut(s)	421
SsiI	CCGC	1 cut(s)	349
SspMI	CTAG	1 cut(s)	390
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	42
TaqI	TCGA	1 cut(s)	214
TatI	WGTACW	1 cut(s)	377
TfiI	GAWTC	2 cut(s)	149, 424
Tru1I	TTAA	2 cut(s)	66, 296
Tru9I	TTAA	2 cut(s)	66, 296
TspDTI	ATGAA	3 cut(s)	42, 162, 334
Van91I	CCANNNNNTGG	1 cut(s)	235
Vha464I	CTTAAG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	58
XceI	RCATGY	3 cut(s)	161, 288, 421
XspI	CTAG	1 cut(s)	390
ZrmI	AGTACT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.