Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006565.1

Orthogroup ID

OG0016456

Physical Location & Seq

Genomic Coordinates Forward (+)

9187 .. 10649

Gene Structure 1463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006565.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atggaacttgatgcttctgaggttgaagcagttgacatacgcaatgaatcattgcatgttttgaatggaaaatatgcgctgttgttgctgcgtgctatcaatcaaaagcttcgagttgttgatctccaagatttggcacttggaaaggatttcttgagggatctatcacagagaggtttgacatgccaagttttaaacttgagatcttcacattttcggaagctcaatatgatgggagagttcatgcggatacacaccctcaaccttgactttagtacttcactcactagttttcaggaggattgtttttcttgcatgcccaatctaatgtgcctctctctgtgcgagacaagaattttaaatctctggacaactattgctgcactttctaaactcccttctttggttgaacttcggtttcagcattggtcatgctgcaatgatgttgggccttattctgcatcacctagtcggaagtcacatcacaaaacttattcaaatcagcgaaataatggtagaacatcatccattaatattggggaactaacagaccagtactcaagcacagaagaggtgctcaggaatatgtttttgcttaataatgtggttataaatgatgatgaaagtagggctgaggattcagatgatagcgaactagacttttcaagtcccctgcaagaacatggttctgtggagcgtttgtcaaatggtttttcaggagggaccagactgaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

245

Amino Acids

27.8

Weight (kDa)

5.51

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016456)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0254281 RchiOBHm_Chr6g0254361
rosa_laevigata	RLG00000014925
rosa_multiflora	Rmu_co8084018.1_g000001 Rmu_sc0003666.1_g000005 Rmu_sc0006565.1_g000003 Rmu_sc0007138.1_g000007 Rmu_sc0007138.1_g000008 Rmu_sc0007138.1_g000011 Rmu_sc0015027.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210900
rosa_rugosa	Rorug04G0165100
rosa_samantha	Rh6AG068000 Rh6BG060900
rosa_wichuraiana	Rw6G006050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	611
AccB7I	CCANNNNNTGG	1 cut(s)	133
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	354
AfaI	GTAC	2 cut(s)	277, 557
AfiI	CCNNNNNNNGG	3 cut(s)	133, 403, 732
AgsI	TTSAA	5 cut(s)	26, 64, 410, 498, 666
AhlI	ACTAGT	1 cut(s)	287
AluBI	AGCT	2 cut(s)	109, 223
AluI	AGCT	2 cut(s)	109, 223
Alw21I	GWGCWC	1 cut(s)	579
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	168
AoxI	GGCC	1 cut(s)	449
ApeKI	GCWGC	3 cut(s)	88, 380, 435
ApoI	RAATTY	1 cut(s)	354
AseI	ATTAAT	1 cut(s)	531
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	2 cut(s)	449, 723
AsuHPI	GGTGA	1 cut(s)	456
AvaII	GGWCC	1 cut(s)	723
Bbv12I	GWGCWC	1 cut(s)	579
BbvCI	CCTCAGC	1 cut(s)	633
BbvI	GCAGC	3 cut(s)	75, 367, 422
BccI	CCATC	1 cut(s)	226
BciVI	GTATCC	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	341
BcuI	ACTAGT	1 cut(s)	287
BfaI	CTAG	3 cut(s)	288, 468, 656
BfuI	GTATCC	1 cut(s)	243
BglII	AGATCT	1 cut(s)	203
BisI	GCNGC	3 cut(s)	89, 381, 436
BlsI	GCNGC	3 cut(s)	90, 382, 437
BmcAI	AGTACT	2 cut(s)	277, 557
Bme18I	GGWCC	1 cut(s)	723
BmgT120I	GGNCC	2 cut(s)	449, 723
BmiI	GGNNCC	1 cut(s)	724
BmsI	GCATC	1 cut(s)	470
Bpu10I	CCTNAGC	2 cut(s)	578, 633
BpuEI	CTTGAG	3 cut(s)	175, 220, 544
BsaXI	ACNNNNNCTCC	2 cut(s)	686, 716
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 403, 732
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	3 cut(s)	49, 50, 445
BseGI	GGATG	1 cut(s)	524
BseLI	CCNNNNNNNGG	3 cut(s)	133, 403, 732
BseMI	GCAATG	3 cut(s)	49, 50, 445
BseMII	CTCAG	4 cut(s)	9, 592, 624, 722
BseNI	ACTGG	1 cut(s)	553
BseXI	GCAGC	3 cut(s)	75, 367, 422
BsgI	GTGCAG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	579
BslFI	GGGAC	1 cut(s)	654
BslI	CCNNNNNNNGG	3 cut(s)	133, 403, 732
BsmAI	GTCTC	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	654
BsnI	GGCC	1 cut(s)	451
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp143I	GATC	3 cut(s)	121, 160, 203
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	451
BspCNI	CTCAG	4 cut(s)	10, 591, 625, 723
BspLI	GGNNCC	1 cut(s)	724
BspPI	GGATC	1 cut(s)	168
BsrDI	GCAATG	3 cut(s)	49, 50, 445
BsrI	ACTGG	1 cut(s)	553
BssMI	GATC	3 cut(s)	121, 160, 203
Bst6I	CTCTTC	1 cut(s)	564
BstC8I	GCNNGC	2 cut(s)	93, 317
BstDEI	CTNAG	4 cut(s)	18, 578, 633, 731
BstF5I	GGATG	1 cut(s)	524
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	3 cut(s)	124, 163, 206
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	3 cut(s)	121, 160, 203
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstNSI	RCATGY	3 cut(s)	59, 186, 319
BstV1I	GCAGC	3 cut(s)	75, 367, 422
BstX2I	RGATCY	2 cut(s)	160, 203
BstYI	RGATCY	2 cut(s)	160, 203
BsuI	GTATCC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	524
Cac8I	GCNNGC	2 cut(s)	93, 317
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	2 cut(s)	449, 723
Csp6I	GTAC	2 cut(s)	276, 556
CviAII	CATG	6 cut(s)	56, 183, 244, 316, 432, 683
CviJI	RGCY	4 cut(s)	109, 223, 451, 632
CviKI_1	RGCY	4 cut(s)	109, 223, 451, 632
CviQI	GTAC	2 cut(s)	276, 556
DdeI	CTNAG	4 cut(s)	18, 578, 633, 731
DpnI	GATC	3 cut(s)	123, 162, 205
DpnII	GATC	3 cut(s)	121, 160, 203
DraI	TTTAAA	2 cut(s)	195, 360
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
Eco47I	GGWCC	1 cut(s)	723
FaeI	CATG	6 cut(s)	59, 186, 247, 319, 435, 686
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FaqI	GGGAC	1 cut(s)	654
FatI	CATG	6 cut(s)	55, 182, 243, 315, 431, 682
Fnu4HI	GCNGC	3 cut(s)	89, 381, 436
FokI	GGATG	1 cut(s)	511
Fsp4HI	GCNGC	3 cut(s)	89, 381, 436
FspBI	CTAG	3 cut(s)	288, 468, 656
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	3 cut(s)	89, 381, 436
HaeIII	GGCC	1 cut(s)	451
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	6 cut(s)	59, 186, 247, 319, 435, 686
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	2 cut(s)	47, 638
HphI	GGTGA	1 cut(s)	456
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	4 cut(s)	19, 219, 474, 643
Hpy188III	TCNNGA	5 cut(s)	154, 296, 367, 580, 717
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	408
HpyCH4V	TGCA	6 cut(s)	55, 315, 383, 438, 461, 676
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	4 cut(s)	18, 578, 633, 731
Hsp92II	CATG	6 cut(s)	59, 186, 247, 319, 435, 686
HspAI	GCGC	1 cut(s)	77
Kzo9I	GATC	3 cut(s)	121, 160, 203
LmnI	GCTCC	1 cut(s)	694
LpnPI	CCDG	6 cut(s)	281, 352, 565, 566, 686, 702
Lsp1109I	GCAGC	3 cut(s)	75, 367, 422
LweI	GCATC	1 cut(s)	470
MaeI	CTAG	3 cut(s)	288, 468, 656
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	3 cut(s)	123, 162, 205
MboI	GATC	3 cut(s)	121, 160, 203
MboII	GAAGA	2 cut(s)	198, 581
MflI	RGATCY	2 cut(s)	160, 203
MhlI	GDGCHC	1 cut(s)	579
MluCI	AATT	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	452
MseI	TTAA	4 cut(s)	194, 359, 531, 597
MwoI	GCNNNNNNNGC	1 cut(s)	85
NdeII	GATC	3 cut(s)	121, 160, 203
NlaIII	CATG	6 cut(s)	59, 186, 247, 319, 435, 686
NlaIV	GGNNCC	1 cut(s)	724
NmuCI	GTSAC	1 cut(s)	477
NspI	RCATGY	3 cut(s)	59, 186, 319
PaeI	GCATGC	1 cut(s)	319
PfeI	GAWTC	2 cut(s)	47, 638
PflMI	CCANNNNNTGG	1 cut(s)	133
PkrI	GCNGC	3 cut(s)	90, 382, 437
PshBI	ATTAAT	1 cut(s)	531
PsiI	TTATAA	1 cut(s)	611
PspN4I	GGNNCC	1 cut(s)	724
PspPI	GGNCC	2 cut(s)	449, 723
PsuI	RGATCY	2 cut(s)	160, 203
RsaI	GTAC	2 cut(s)	277, 557
RsaNI	GTAC	2 cut(s)	276, 556
SaqAI	TTAA	4 cut(s)	194, 359, 531, 597
SatI	GCNGC	3 cut(s)	89, 381, 436
Sau3AI	GATC	3 cut(s)	121, 160, 203
Sau96I	GGNCC	2 cut(s)	449, 723
ScaI	AGTACT	2 cut(s)	277, 557
SduI	GDGCHC	1 cut(s)	579
SetI	ASST	8 cut(s)	24, 111, 178, 225, 267, 469, 576, 737
SfaNI	GCATC	1 cut(s)	470
SinI	GGWCC	1 cut(s)	723
SmlI	CTYRAG	3 cut(s)	154, 199, 559
SmoI	CTYRAG	3 cut(s)	154, 199, 559
SpeI	ACTAGT	1 cut(s)	287
SphI	GCATGC	1 cut(s)	319
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	1 cut(s)	247
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	3 cut(s)	288, 468, 656
TaqI	TCGA	1 cut(s)	112
TasI	AATT	1 cut(s)	354
TatI	WGTACW	2 cut(s)	275, 555
TfiI	GAWTC	2 cut(s)	47, 638
Tru1I	TTAA	4 cut(s)	194, 359, 531, 597
Tru9I	TTAA	4 cut(s)	194, 359, 531, 597
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	3 cut(s)	88, 380, 435
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	3 cut(s)	60, 232, 636
Van91I	CCANNNNNTGG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	723
VspI	ATTAAT	1 cut(s)	531
XapI	RAATTY	1 cut(s)	354
XceI	RCATGY	3 cut(s)	59, 186, 319
XspI	CTAG	3 cut(s)	288, 468, 656
ZrmI	AGTACT	2 cut(s)	277, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.