Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016456

Physical Location & Seq

Genomic Coordinates Forward (+)

9364798 .. 9366348

Gene Structure 1551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22808

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAACTTGATGCTTCTGAGGTTGAAGCAGTTGACATATGCAATGAATCATTGCATGTTTTGAATGGAAAATATGCGCTGTTGTTGATGCGTGCTATCAATCAAAAGCTTCGAGTTGTTGATCTCCAAGATTTGGCACTTGGAAAGGATTTCTTGAGAGATCTTTCACAGAGAGGTTTGACATGCCAAGTTTTAAACTCGAGATCTTCACATTTTCGGAAGCTCAATATGATGGGAGAGTTCCTGCGGATACACACCCTCAACCTTGACTTTAGTACTTCACTCACTAGTTTTCAGGAGGATTGTTTTTCTTGCATGCCCAATCTAATGTGCCTCTCTCTGTGCGAGACTAGAATTTTAAATCTCTGGACAACCATTGCTGCGCTTTCTAAACTCCCTTTTTGGTTGAACTTCGGTTTCAGCATTGGTCATGCTGCAATGATGTTGGGCCTTATTCTGCATCATCTAGTGGGAAGTCACATCACAAAACTTATTCAAATCAGCGAAATAATGGTAGAGCATCATCCATTAATATTGGGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

181

Amino Acids

20.48

Weight (kDa)

6.28

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHU1_N	PF20919	2 - 142	7.1e-39	DWD hypersensitive to UV-B 1, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016456)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0254281 RchiOBHm_Chr6g0254361
rosa_laevigata	RLG00000014925
rosa_multiflora	Rmu_co8084018.1_g000001 Rmu_sc0003666.1_g000005 Rmu_sc0006565.1_g000003 Rmu_sc0007138.1_g000007 Rmu_sc0007138.1_g000008 Rmu_sc0007138.1_g000011 Rmu_sc0015027.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210900
rosa_rugosa	Rorug04G0165100
rosa_samantha	Rh6AG068000 Rh6BG060900
rosa_wichuraiana	Rw6G006050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	133
AciI	CCGC	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	354
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	4 cut(s)	26, 64, 409, 497
AhlI	ACTAGT	1 cut(s)	287
AluBI	AGCT	2 cut(s)	109, 223
AluI	AGCT	2 cut(s)	109, 223
Alw26I	GTCTC	1 cut(s)	341
Ama87I	CYCGRG	1 cut(s)	199
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	2 cut(s)	380, 434
ApoI	RAATTY	1 cut(s)	354
AseI	ATTAAT	1 cut(s)	530
AspLEI	GCGC	2 cut(s)	79, 385
AspS9I	GGNCC	1 cut(s)	448
AvaI	CYCGRG	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	367, 421
BccI	CCATC	1 cut(s)	226
BciVI	GTATCC	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	341
BcuI	ACTAGT	1 cut(s)	287
BfaI	CTAG	3 cut(s)	288, 351, 467
BfuI	GTATCC	1 cut(s)	243
BglII	AGATCT	2 cut(s)	160, 203
BisI	GCNGC	2 cut(s)	381, 435
BlsI	GCNGC	2 cut(s)	382, 436
BmcAI	AGTACT	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	448
BmsI	GCATC	3 cut(s)	78, 469, 529
BpuEI	CTTGAG	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse3DI	GCAATG	4 cut(s)	49, 50, 375, 444
BseGI	GGATG	1 cut(s)	523
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMI	GCAATG	4 cut(s)	49, 50, 375, 444
BseMII	CTCAG	1 cut(s)	9
BseXI	GCAGC	2 cut(s)	367, 421
BshFI	GGCC	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	450
BsoBI	CYCGRG	1 cut(s)	199
Bsp143I	GATC	3 cut(s)	121, 160, 203
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	1 cut(s)	10
BsrDI	GCAATG	4 cut(s)	49, 50, 375, 444
BssMI	GATC	3 cut(s)	121, 160, 203
BstC8I	GCNNGC	2 cut(s)	93, 317
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	523
BstHHI	GCGC	2 cut(s)	79, 385
BstKTI	GATC	3 cut(s)	124, 163, 206
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	3 cut(s)	121, 160, 203
BstNSI	RCATGY	3 cut(s)	59, 186, 319
BstV1I	GCAGC	2 cut(s)	367, 421
BstX2I	RGATCY	2 cut(s)	160, 203
BstYI	RGATCY	2 cut(s)	160, 203
BsuI	GTATCC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	523
Cac8I	GCNNGC	2 cut(s)	93, 317
CfoI	GCGC	2 cut(s)	79, 385
Cfr13I	GGNCC	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	4 cut(s)	56, 183, 316, 431
CviJI	RGCY	3 cut(s)	109, 223, 450
CviKI_1	RGCY	3 cut(s)	109, 223, 450
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	3 cut(s)	123, 162, 205
DpnII	GATC	3 cut(s)	121, 160, 203
DraI	TTTAAA	2 cut(s)	195, 360
Eco88I	CYCGRG	1 cut(s)	199
FaeI	CATG	4 cut(s)	59, 186, 319, 434
FaiI	YATR	8 cut(s)	38, 40, 57, 75, 184, 230, 317, 432
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FatI	CATG	4 cut(s)	55, 182, 315, 430
FauNDI	CATATG	1 cut(s)	38
Fnu4HI	GCNGC	2 cut(s)	381, 435
FokI	GGATG	1 cut(s)	510
Fsp4HI	GCNGC	2 cut(s)	381, 435
FspBI	CTAG	3 cut(s)	288, 351, 467
GlaI	GCGC	2 cut(s)	78, 384
GluI	GCNGC	2 cut(s)	381, 435
HaeIII	GGCC	1 cut(s)	450
HhaI	GCGC	2 cut(s)	79, 385
Hin1II	CATG	4 cut(s)	59, 186, 319, 434
Hin6I	GCGC	2 cut(s)	77, 383
HinP1I	GCGC	2 cut(s)	77, 383
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	19, 219
Hpy188III	TCNNGA	4 cut(s)	154, 201, 296, 367
Hpy8I	GTNNAC	1 cut(s)	34
HpyCH4V	TGCA	5 cut(s)	42, 55, 315, 437, 460
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	4 cut(s)	59, 186, 319, 434
HspAI	GCGC	2 cut(s)	77, 383
Kzo9I	GATC	3 cut(s)	121, 160, 203
LpnPI	CCDG	3 cut(s)	257, 281, 352
Lsp1109I	GCAGC	2 cut(s)	367, 421
LweI	GCATC	3 cut(s)	78, 469, 529
MaeI	CTAG	3 cut(s)	288, 351, 467
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	3 cut(s)	123, 162, 205
MboI	GATC	3 cut(s)	121, 160, 203
MboII	GAAGA	1 cut(s)	198
MflI	RGATCY	2 cut(s)	160, 203
MluCI	AATT	1 cut(s)	354
MnlI	CCTC	5 cut(s)	13, 167, 269, 292, 344
MseI	TTAA	3 cut(s)	194, 359, 530
NdeI	CATATG	1 cut(s)	38
NdeII	GATC	3 cut(s)	121, 160, 203
NlaIII	CATG	4 cut(s)	59, 186, 319, 434
NmuCI	GTSAC	1 cut(s)	476
NspI	RCATGY	3 cut(s)	59, 186, 319
PaeI	GCATGC	1 cut(s)	319
PaeR7I	CTCGAG	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	47
PflMI	CCANNNNNTGG	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	382, 436
PshBI	ATTAAT	1 cut(s)	530
PspPI	GGNCC	1 cut(s)	448
PsuI	RGATCY	2 cut(s)	160, 203
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SaqAI	TTAA	3 cut(s)	194, 359, 530
SatI	GCNGC	2 cut(s)	381, 435
Sau3AI	GATC	3 cut(s)	121, 160, 203
Sau96I	GGNCC	1 cut(s)	448
ScaI	AGTACT	1 cut(s)	277
SetI	ASST	5 cut(s)	24, 111, 178, 225, 267
SfaNI	GCATC	3 cut(s)	78, 469, 529
Sfr274I	CTCGAG	1 cut(s)	199
SlaI	CTCGAG	1 cut(s)	199
SmlI	CTYRAG	2 cut(s)	154, 199
SmoI	CTYRAG	2 cut(s)	154, 199
SpeI	ACTAGT	1 cut(s)	287
SphI	GCATGC	1 cut(s)	319
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	1 cut(s)	247
SspI	AATATT	1 cut(s)	534
SspMI	CTAG	3 cut(s)	288, 351, 467
TaqI	TCGA	2 cut(s)	112, 200
TasI	AATT	1 cut(s)	354
TatI	WGTACW	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	3 cut(s)	194, 359, 530
Tru9I	TTAA	3 cut(s)	194, 359, 530
TseFI	GTSAC	1 cut(s)	476
TseI	GCWGC	2 cut(s)	380, 434
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	1 cut(s)	60
Van91I	CCANNNNNTGG	1 cut(s)	133
VspI	ATTAAT	1 cut(s)	530
XapI	RAATTY	1 cut(s)	354
XceI	RCATGY	3 cut(s)	59, 186, 319
XhoI	CTCGAG	1 cut(s)	199
XspI	CTAG	3 cut(s)	288, 351, 467
ZrmI	AGTACT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.