Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016456

Physical Location & Seq

Genomic Coordinates Forward (+)

9909427 .. 9912469

Gene Structure 3043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG068000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCAATCGACATCGCAACCTTAGAAAAGAGGTACATTAATTCCTGCAGGAAGCACTGTGTTTCACCTAATGATGCAATTCTCTCTGTTCTGTTTAAGGCTGAGGTAAAAAAGTCTTGCAATGAGCTCTGTAGCCTGGAGATTTCATTGGACCATCTTAAGGATGCTGAATTCCCACCACTTCTTGATTTATGTATGGAACTTGATGCTTCTGAGGTTGAAGCAGTTAACATATGCAATGAATCATTGCATGTTTTGAATGGAAAATATGCGCTGTTGTTGATGCGTGCTATCAATCAAAAACTTCGAGTTGTTGATCTCCAAGATTTGTCATTTGGAAAGGATTTCTTGAGGGATCTTTCACAGAGAGGTTTGACATGCCAAGTTATAAACTTGAGATCTTCACATTTTCGGAAGCTCAATATGATGGGAGAGTTCCTGCGGATATACACCCTCAACCTTGACTTTAGTACTTCACTCACTAGTTTCCAGGAGGATTGTTTTTCTTGCATGCCCAATCTAATGTGCCTCTCTCTGTGCGAGGCAAGAATTTTAAATCTTTGGACAACCATTGTTGCGCTTTCTAAACTCCCTTCTTTGGTTGAACTTCGGTTTCAGCATTGGTCATGCTGCAATGATGTTGGGCCTTATTCTGCATCATCTAGTGGGAAGTCACATCACAAAACTTATTCAAATCAGCGAAATAATGGTAGAGCATCATCCATTAATATTGGGGAACTAACAGACCAGTACTCAAGCACAGAAGAGGTGCTCAGGAATATGTTTTTGCTTAATAATGTGGTTATAAATGATGATGAAAGTAGGGCTGAGGATTCAGATGATAGCGAACTAGACTTTTCAAGTCCCCGGCAAGAATATGGTTCTGTGGAGCGTTTGTCAAATGTTTTTTCTGGAGGGAACAGACAGGATCAATCAATTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

314

Amino Acids

35.52

Weight (kDa)

5.25

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHU1_N	PF20919	4 - 272	4.8e-69	DWD hypersensitive to UV-B 1, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016456)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0254281 RchiOBHm_Chr6g0254361
rosa_laevigata	RLG00000014925
rosa_multiflora	Rmu_co8084018.1_g000001 Rmu_sc0003666.1_g000005 Rmu_sc0006565.1_g000003 Rmu_sc0007138.1_g000007 Rmu_sc0007138.1_g000008 Rmu_sc0007138.1_g000011 Rmu_sc0015027.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210900
rosa_rugosa	Rorug04G0165100
rosa_samantha	Rh6AG068000 Rh6BG060900
rosa_wichuraiana	Rw6G006050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	389, 806
AciI	CCGC	1 cut(s)	442
AclWI	GGATC	2 cut(s)	363, 936
AcsI	RAATTY	2 cut(s)	170, 549
AfaI	GTAC	3 cut(s)	35, 472, 752
AfiI	CCNNNNNNNGG	2 cut(s)	160, 598
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	5 cut(s)	221, 259, 605, 693, 861
AhlI	ACTAGT	1 cut(s)	482
AjnI	CCWGG	2 cut(s)	135, 489
AluBI	AGCT	2 cut(s)	127, 418
AluI	AGCT	2 cut(s)	127, 418
Alw21I	GWGCWC	2 cut(s)	129, 774
AlwI	GGATC	2 cut(s)	363, 936
AoxI	GGCC	1 cut(s)	644
ApeKI	GCWGC	1 cut(s)	630
ApoI	RAATTY	2 cut(s)	170, 549
AseI	ATTAAT	2 cut(s)	39, 726
AspLEI	GCGC	2 cut(s)	274, 580
AspS9I	GGNCC	2 cut(s)	151, 644
AsuC2I	CCSGG	1 cut(s)	868
AsuHPI	GGTGA	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	129
Bbv12I	GWGCWC	2 cut(s)	129, 774
BbvCI	CCTCAGC	2 cut(s)	102, 828
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	2 cut(s)	162, 421
BciT130I	CCWGG	2 cut(s)	137, 491
BcnI	CCSGG	1 cut(s)	868
BcuI	ACTAGT	1 cut(s)	482
BfaI	CTAG	3 cut(s)	483, 663, 851
BfmI	CTRYAG	2 cut(s)	46, 130
BfrI	CTTAAG	1 cut(s)	158
BglII	AGATCT	1 cut(s)	398
BisI	GCNGC	1 cut(s)	631
BlsI	GCNGC	1 cut(s)	632
BmcAI	AGTACT	2 cut(s)	472, 752
Bme1390I	CCNGG	3 cut(s)	137, 491, 868
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	151, 644
BmrFI	CCNGG	3 cut(s)	137, 491, 868
BmsI	GCATC	6 cut(s)	64, 154, 196, 273, 665, 725
BpmI	CTGGAG	2 cut(s)	158, 933
Bpu10I	CCTNAGC	3 cut(s)	102, 773, 828
BpuEI	CTTGAG	3 cut(s)	370, 415, 739
BpuMI	CCSGG	1 cut(s)	868
BsaJI	CCNNGG	1 cut(s)	866
BsaXI	ACNNNNNCTCC	2 cut(s)	881, 911
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 598
Bse1I	ACTGG	1 cut(s)	748
Bse3DI	GCAATG	4 cut(s)	127, 244, 245, 640
BseBI	CCWGG	2 cut(s)	137, 491
BseDI	CCNNGG	1 cut(s)	866
BseGI	GGATG	2 cut(s)	169, 719
BseLI	CCNNNNNNNGG	2 cut(s)	160, 598
BseMI	GCAATG	4 cut(s)	127, 244, 245, 640
BseMII	CTCAG	4 cut(s)	93, 204, 787, 819
BseNI	ACTGG	1 cut(s)	748
BseXI	GCAGC	1 cut(s)	617
BshFI	GGCC	1 cut(s)	646
BsiHKAI	GWGCWC	2 cut(s)	129, 774
BsiSI	CCGG	1 cut(s)	868
BslFI	GGGAC	1 cut(s)	849
BslI	CCNNNNNNNGG	2 cut(s)	160, 598
BsmFI	GGGAC	1 cut(s)	849
BsnI	GGCC	1 cut(s)	646
Bsp1286I	GDGCHC	2 cut(s)	129, 774
Bsp143I	GATC	4 cut(s)	316, 355, 398, 928
BspACI	CCGC	1 cut(s)	442
BspANI	GGCC	1 cut(s)	646
BspCNI	CTCAG	4 cut(s)	94, 205, 786, 820
BspMAI	CTGCAG	1 cut(s)	50
BspPI	GGATC	2 cut(s)	363, 936
BspTI	CTTAAG	1 cut(s)	158
BsrDI	GCAATG	4 cut(s)	127, 244, 245, 640
BsrI	ACTGG	1 cut(s)	748
BssECI	CCNNGG	1 cut(s)	866
BssMI	GATC	4 cut(s)	316, 355, 398, 928
Bst2UI	CCWGG	2 cut(s)	137, 491
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	759
BstAFI	CTTAAG	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	288, 512
BstDEI	CTNAG	5 cut(s)	22, 102, 213, 773, 828
BstF5I	GGATG	2 cut(s)	169, 719
BstHHI	GCGC	2 cut(s)	274, 580
BstKTI	GATC	4 cut(s)	319, 358, 401, 931
BstMBI	GATC	4 cut(s)	316, 355, 398, 928
BstNI	CCWGG	2 cut(s)	137, 491
BstNSI	RCATGY	3 cut(s)	254, 381, 514
BstSCI	CCNGG	3 cut(s)	135, 489, 866
BstSFI	CTRYAG	2 cut(s)	46, 130
BstV1I	GCAGC	1 cut(s)	617
BstX2I	RGATCY	2 cut(s)	355, 398
BstYI	RGATCY	2 cut(s)	355, 398
BsuRI	GGCC	1 cut(s)	646
BtsCI	GGATG	2 cut(s)	169, 719
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	288, 512
CfoI	GCGC	2 cut(s)	274, 580
Cfr13I	GGNCC	2 cut(s)	151, 644
Csp6I	GTAC	3 cut(s)	34, 471, 751
CviAII	CATG	4 cut(s)	251, 378, 511, 627
CviJI	RGCY	6 cut(s)	101, 127, 135, 418, 646, 827
CviKI_1	RGCY	6 cut(s)	101, 127, 135, 418, 646, 827
CviQI	GTAC	3 cut(s)	34, 471, 751
DdeI	CTNAG	5 cut(s)	22, 102, 213, 773, 828
DpnI	GATC	4 cut(s)	318, 357, 400, 930
DpnII	GATC	4 cut(s)	316, 355, 398, 928
DraI	TTTAAA	1 cut(s)	555
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
Ecl136II	GAGCTC	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	135, 489
EcoT38I	GRGCYC	1 cut(s)	129
FaeI	CATG	4 cut(s)	254, 381, 514, 630
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FaqI	GGGAC	1 cut(s)	849
FatI	CATG	4 cut(s)	250, 377, 510, 626
FauNDI	CATATG	1 cut(s)	233
Fnu4HI	GCNGC	1 cut(s)	631
FokI	GGATG	2 cut(s)	176, 706
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	631
FspBI	CTAG	3 cut(s)	483, 663, 851
GlaI	GCGC	2 cut(s)	273, 579
GluI	GCNGC	1 cut(s)	631
GsuI	CTGGAG	2 cut(s)	158, 933
HaeIII	GGCC	1 cut(s)	646
HapII	CCGG	1 cut(s)	868
HhaI	GCGC	2 cut(s)	274, 580
Hin1II	CATG	4 cut(s)	254, 381, 514, 630
Hin6I	GCGC	2 cut(s)	272, 578
HinP1I	GCGC	2 cut(s)	272, 578
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	2 cut(s)	242, 833
HpaI	GTTAAC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	868
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	3 cut(s)	214, 414, 838
Hpy188III	TCNNGA	4 cut(s)	185, 349, 775, 912
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	603
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	8 cut(s)	48, 77, 120, 237, 250, 510, 633, 656
HpyF3I	CTNAG	5 cut(s)	22, 102, 213, 773, 828
Hsp92II	CATG	4 cut(s)	254, 381, 514, 630
HspAI	GCGC	2 cut(s)	272, 578
KspAI	GTTAAC	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	316, 355, 398, 928
LmnI	GCTCC	1 cut(s)	889
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	6 cut(s)	64, 154, 196, 273, 665, 725
MaeI	CTAG	3 cut(s)	483, 663, 851
MaeIII	GTNAC	1 cut(s)	672
MalI	GATC	4 cut(s)	318, 357, 400, 930
MboI	GATC	4 cut(s)	316, 355, 398, 928
MboII	GAAGA	2 cut(s)	393, 776
MflI	RGATCY	2 cut(s)	355, 398
MhlI	GDGCHC	2 cut(s)	129, 774
MluCI	AATT	5 cut(s)	40, 78, 170, 549, 936
MseI	TTAA	8 cut(s)	39, 96, 159, 228, 554, 726, 792, 939
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	1 cut(s)	868
MspR9I	CCNGG	3 cut(s)	137, 491, 868
MvaI	CCWGG	2 cut(s)	137, 491
NciI	CCSGG	1 cut(s)	868
NdeI	CATATG	1 cut(s)	233
NdeII	GATC	4 cut(s)	316, 355, 398, 928
NlaIII	CATG	4 cut(s)	254, 381, 514, 630
NmuCI	GTSAC	1 cut(s)	672
NspI	RCATGY	3 cut(s)	254, 381, 514
PaeI	GCATGC	1 cut(s)	514
PfeI	GAWTC	2 cut(s)	242, 833
PfoI	TCCNGGA	1 cut(s)	489
PkrI	GCNGC	1 cut(s)	632
PshBI	ATTAAT	2 cut(s)	39, 726
PsiI	TTATAA	2 cut(s)	389, 806
Psp124BI	GAGCTC	1 cut(s)	129
Psp6I	CCWGG	2 cut(s)	135, 489
PspGI	CCWGG	2 cut(s)	135, 489
PspPI	GGNCC	2 cut(s)	151, 644
PstI	CTGCAG	1 cut(s)	50
PsuI	RGATCY	2 cut(s)	355, 398
RsaI	GTAC	3 cut(s)	35, 472, 752
RsaNI	GTAC	3 cut(s)	34, 471, 751
SacI	GAGCTC	1 cut(s)	129
SaqAI	TTAA	8 cut(s)	39, 96, 159, 228, 554, 726, 792, 939
SatI	GCNGC	1 cut(s)	631
Sau3AI	GATC	4 cut(s)	316, 355, 398, 928
Sau96I	GGNCC	2 cut(s)	151, 644
SbfI	CCTGCAGG	1 cut(s)	50
ScaI	AGTACT	2 cut(s)	472, 752
ScrFI	CCNGG	3 cut(s)	137, 491, 868
SdaI	CCTGCAGG	1 cut(s)	50
SduI	GDGCHC	2 cut(s)	129, 774
SfaNI	GCATC	6 cut(s)	64, 154, 196, 273, 665, 725
SfcI	CTRYAG	2 cut(s)	46, 130
SinI	GGWCC	1 cut(s)	151
SmlI	CTYRAG	4 cut(s)	158, 349, 394, 754
SmoI	CTYRAG	4 cut(s)	158, 349, 394, 754
SpeI	ACTAGT	1 cut(s)	482
SphI	GCATGC	1 cut(s)	514
Sse8387I	CCTGCAGG	1 cut(s)	50
Sse9I	AATT	5 cut(s)	40, 78, 170, 549, 936
SsiI	CCGC	1 cut(s)	442
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	3 cut(s)	483, 663, 851
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	3 cut(s)	135, 489, 866
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	2 cut(s)	9, 307
TasI	AATT	5 cut(s)	40, 78, 170, 549, 936
TatI	WGTACW	2 cut(s)	470, 750
TfiI	GAWTC	2 cut(s)	242, 833
Tru1I	TTAA	8 cut(s)	39, 96, 159, 228, 554, 726, 792, 939
Tru9I	TTAA	8 cut(s)	39, 96, 159, 228, 554, 726, 792, 939
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	672
TseI	GCWGC	1 cut(s)	630
Tsp45I	GTSAC	1 cut(s)	672
TspDTI	ATGAA	3 cut(s)	135, 255, 831
TspRI	CASTG	1 cut(s)	62
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	151
VspI	ATTAAT	2 cut(s)	39, 726
XapI	RAATTY	2 cut(s)	170, 549
XceI	RCATGY	3 cut(s)	254, 381, 514
XspI	CTAG	3 cut(s)	483, 663, 851
ZrmI	AGTACT	2 cut(s)	472, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.