Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007138.1

Orthogroup ID

OG0016456

Physical Location & Seq

Genomic Coordinates Reverse (-)

27949 .. 28443

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007138.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgcggatacacaccctcaaccttgactttagtacttcactcactagttttcaggaggattgtttttcttgcatgcccaatctaatgtgcctctctctgtgcgagacaagaattttaaatctctggacaactattgctgcgctttctaaactcccttctttggttgaacttcggtttcagcattggtcatgctgcaatgatgttgggccttattctgcatcatctagtgggaagtcacatcacaaaacttattcaaatcagcgaaataatggtagcacatcatccattaatattggggaactaacaaacccgtactcaagcacagaagaggtgctcaggaatatgtttttgcttaataatgtggttataaatgatgatgaaagtagggctgaggattcggatgatagcgaactagacttttcaagtcccctgcaagaacatggttctgtggagcgtttgtcaaatggtttttcaggagggaccagactgaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

164

Amino Acids

18.32

Weight (kDa)

4.98

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016456)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0254281 RchiOBHm_Chr6g0254361
rosa_laevigata	RLG00000014925
rosa_multiflora	Rmu_co8084018.1_g000001 Rmu_sc0003666.1_g000005 Rmu_sc0006565.1_g000003 Rmu_sc0007138.1_g000007 Rmu_sc0007138.1_g000008 Rmu_sc0007138.1_g000011 Rmu_sc0015027.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210900
rosa_rugosa	Rorug04G0165100
rosa_samantha	Rh6AG068000 Rh6BG060900
rosa_wichuraiana	Rw6G006050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AciI	CCGC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	111
AfaI	GTAC	2 cut(s)	34, 314
AfiI	CCNNNNNNNGG	2 cut(s)	160, 489
AgsI	TTSAA	3 cut(s)	167, 255, 423
AhlI	ACTAGT	1 cut(s)	44
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	1 cut(s)	98
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	2 cut(s)	137, 192
ApoI	RAATTY	1 cut(s)	111
AseI	ATTAAT	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	2 cut(s)	206, 480
AvaII	GGWCC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	336
BbvCI	CCTCAGC	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	124, 179
BcoDI	GTCTC	1 cut(s)	98
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	3 cut(s)	45, 225, 413
BisI	GCNGC	2 cut(s)	138, 193
BlsI	GCNGC	2 cut(s)	139, 194
BmcAI	AGTACT	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	480
BmgT120I	GGNCC	2 cut(s)	206, 480
BmiI	GGNNCC	1 cut(s)	481
BmsI	GCATC	1 cut(s)	227
Bpu10I	CCTNAGC	2 cut(s)	335, 390
BpuEI	CTTGAG	1 cut(s)	301
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 489
Bse3DI	GCAATG	1 cut(s)	202
BseGI	GGATG	2 cut(s)	281, 406
BseLI	CCNNNNNNNGG	2 cut(s)	160, 489
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	3 cut(s)	349, 381, 479
BseXI	GCAGC	2 cut(s)	124, 179
BshFI	GGCC	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	411
BslI	CCNNNNNNNGG	2 cut(s)	160, 489
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	411
BsnI	GGCC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	336
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	3 cut(s)	348, 382, 480
BspLI	GGNNCC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	3 cut(s)	335, 390, 488
BstF5I	GGATG	2 cut(s)	281, 406
BstHHI	GCGC	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	124, 179
BsuRI	GGCC	1 cut(s)	208
BtsCI	GGATG	2 cut(s)	281, 406
Cac8I	GCNNGC	1 cut(s)	74
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	206, 480
Csp6I	GTAC	2 cut(s)	33, 313
CviAII	CATG	3 cut(s)	73, 189, 440
CviJI	RGCY	2 cut(s)	208, 389
CviKI_1	RGCY	2 cut(s)	208, 389
CviQI	GTAC	2 cut(s)	33, 313
DdeI	CTNAG	3 cut(s)	335, 390, 488
DraI	TTTAAA	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	480
FaeI	CATG	3 cut(s)	76, 192, 443
FaiI	YATR	5 cut(s)	74, 190, 344, 368, 441
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	3 cut(s)	72, 188, 439
Fnu4HI	GCNGC	2 cut(s)	138, 193
FokI	GGATG	2 cut(s)	268, 413
Fsp4HI	GCNGC	2 cut(s)	138, 193
FspBI	CTAG	3 cut(s)	45, 225, 413
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	2 cut(s)	138, 193
HaeIII	GGCC	1 cut(s)	208
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	3 cut(s)	76, 192, 443
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HinfI	GANTC	1 cut(s)	395
Hpy188I	TCNGA	1 cut(s)	400
Hpy188III	TCNNGA	4 cut(s)	53, 124, 337, 474
HpyAV	CCTTC	1 cut(s)	165
HpyCH4V	TGCA	4 cut(s)	72, 195, 218, 433
HpyF3I	CTNAG	3 cut(s)	335, 390, 488
Hsp92II	CATG	3 cut(s)	76, 192, 443
HspAI	GCGC	1 cut(s)	140
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	5 cut(s)	38, 109, 322, 443, 459
Lsp1109I	GCAGC	2 cut(s)	124, 179
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	3 cut(s)	45, 225, 413
MaeIII	GTNAC	1 cut(s)	234
MboII	GAAGA	1 cut(s)	338
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	1 cut(s)	111
MnlI	CCTC	7 cut(s)	26, 49, 101, 322, 385, 470, 483
MseI	TTAA	3 cut(s)	116, 288, 354
NlaIII	CATG	3 cut(s)	76, 192, 443
NlaIV	GGNNCC	1 cut(s)	481
NmuCI	GTSAC	1 cut(s)	234
NspI	RCATGY	1 cut(s)	76
PaeI	GCATGC	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	395
PkrI	GCNGC	2 cut(s)	139, 194
PshBI	ATTAAT	1 cut(s)	288
PsiI	TTATAA	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	481
PspPI	GGNCC	2 cut(s)	206, 480
RsaI	GTAC	2 cut(s)	34, 314
RsaNI	GTAC	2 cut(s)	33, 313
SaqAI	TTAA	3 cut(s)	116, 288, 354
SatI	GCNGC	2 cut(s)	138, 193
Sau96I	GGNCC	2 cut(s)	206, 480
ScaI	AGTACT	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	3 cut(s)	24, 333, 494
SfaNI	GCATC	1 cut(s)	227
SinI	GGWCC	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
SpeI	ACTAGT	1 cut(s)	44
SphI	GCATGC	1 cut(s)	76
Sse9I	AATT	1 cut(s)	111
SsiI	CCGC	1 cut(s)	4
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	3 cut(s)	45, 225, 413
TasI	AATT	1 cut(s)	111
TatI	WGTACW	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	3 cut(s)	116, 288, 354
Tru9I	TTAA	3 cut(s)	116, 288, 354
TseFI	GTSAC	1 cut(s)	234
TseI	GCWGC	2 cut(s)	137, 192
Tsp45I	GTSAC	1 cut(s)	234
TspDTI	ATGAA	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	480
VspI	ATTAAT	1 cut(s)	288
XapI	RAATTY	1 cut(s)	111
XceI	RCATGY	1 cut(s)	76
XspI	CTAG	3 cut(s)	45, 225, 413
ZrmI	AGTACT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.